View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12733_high_5 (Length: 579)
Name: NF12733_high_5
Description: NF12733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12733_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 64 - 422
Target Start/End: Complemental strand, 30349768 - 30349411
Alignment:
| Q |
64 |
caagtgccctcaaaattgtaaccccttgctaccatcaccgccgccgccaccaagattcgtatatgtaccagtgccaggtcaacctaaaccatattggata |
163 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30349768 |
caagtgccctcaaaattgtaaccccttactaccatcaccgccgccgccaccaagattcgtatatgtaccagtgccaggtcaacctaaaccatattggata |
30349669 |
T |
|
| Q |
164 |
tattattactctggagctgaaagtagagcagtgaatttcctggttttggctttaggaggaggactctcgattgcaatgatttttggatgatatcatcatg |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30349668 |
tattattactctggagctgaaagtagagcagtgaatttcctggttttggctttaggaggaggactctcgattgcaatgatttttggatgatatcatcatg |
30349569 |
T |
|
| Q |
264 |
aaactaaagctaaacttgttcaaataagtttcatctgattaatgttctattctcttattcttgttcacannnnnnnattatgttttaatttccatgcact |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30349568 |
aaactaaagctaaacttgttcaaataagtttcatcttattaatgttctattctcttattcttgttcaca-ttttttattatgttttaatttccatgcact |
30349470 |
T |
|
| Q |
364 |
tattatgtatgtctttcctaacgtagaggaaagtttattctgatatgtgtttcataata |
422 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30349469 |
tattatgtatgtctttcctaacgtagaggaaagtttattctgatatgtgtttcataata |
30349411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 414 - 573
Target Start/End: Complemental strand, 30349005 - 30348845
Alignment:
| Q |
414 |
ttcataataattcaaaattaaccttagtaacannnnnnnnnnnactagtacttaattacgtgtacattgctttt-cagtcgataaaatgtttgaatatga |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
30349005 |
ttcataataattcaaaattaaccttagtaacaattttttttttactagtacttaattacgtgtacattgctttttcagtcgataaaatgtttgaatatga |
30348906 |
T |
|
| Q |
513 |
tgatgaacaggcctttacaaaacgattatatgtgtgtatgatgaacatagattcttctcac |
573 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
30348905 |
tgatgaacaagcctttacaaaatgattatatgtgtgtatgatgaacatagattcttttcac |
30348845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University