View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12733_high_6 (Length: 430)
Name: NF12733_high_6
Description: NF12733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12733_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 346 - 412
Target Start/End: Complemental strand, 14962127 - 14962061
Alignment:
| Q |
346 |
tccagaatataaatttgttttcaaatcatcatatcgtcaaacttttcatcttgtacgtgtttgaatt |
412 |
Q |
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| T |
14962127 |
tccagaatataaatttgttttcaaatcatcatatcgtcaaacttttcatcttgtacgtgtttgaatt |
14962061 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 30585152 - 30585111
Alignment:
| Q |
73 |
taataatttaagaaaatgaaagttattgaaagtaaacgcgtg |
114 |
Q |
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| T |
30585152 |
taataatttaagaaaatgaaagtgattgaatgtaaacacgtg |
30585111 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 102
Target Start/End: Original strand, 47906989 - 47907018
Alignment:
| Q |
73 |
taataatttaagaaaatgaaagttattgaa |
102 |
Q |
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| T |
47906989 |
taataatttaagaaaatgaaagttattgaa |
47907018 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 107
Target Start/End: Original strand, 28286905 - 28286941
Alignment:
| Q |
71 |
cgtaataatttaagaaaatgaaagttattgaaagtaa |
107 |
Q |
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| T |
28286905 |
cgtaataatttaagaaaatgaaagtaattgaatgtaa |
28286941 |
T |
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