View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12733_low_1 (Length: 878)
Name: NF12733_low_1
Description: NF12733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12733_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 680; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 680; E-Value: 0
Query Start/End: Original strand, 139 - 858
Target Start/End: Original strand, 44231753 - 44232471
Alignment:
| Q |
139 |
atattgatgaccaaaattattgcttcaacatttctgagctttaaaatgcaaaaatatttcgtagtttcatcactcaaacttgtgctcattcaaaactacg |
238 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44231753 |
atattgacgaccaaaattattgcttcaacatttctgagctttaaaatgcaaaaatatttcgtagtttcatcactcaaacttgtgctcattcaaaactacg |
44231852 |
T |
|
| Q |
239 |
aaatgttacagtttctggtacacaatcaatacaaatctaagttcactactgccaaaagtttccatcctagcactatcttttttatgtgaattgatgtaag |
338 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44231853 |
aaatgttacaatttctggtacacaatcaatacaaatctaagttcactactgccaaaagtttccatcctagcactatcttttttatgtgaattgatgtaag |
44231952 |
T |
|
| Q |
339 |
tacattatcaaagattgcatatttttgacttgtgcatgtgaattttggacttgtgcatgtgatgtgactcttgtgtatggccaaaaccaggaaagtattg |
438 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| | |
|
|
| T |
44231953 |
tacattatcaaagattgcatattttggacttgtgcatgtgaattttggacttgtgcatgtgatgtgcctcttttgtatggccaaaaccaggaaagtatgg |
44232052 |
T |
|
| Q |
439 |
caatagttttgttggttgtatttattaatgaacttagttggcttggtgtggaagttatttgtgacataaaaaatgttagattggatggtccctcatttca |
538 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
44232053 |
caatagttttgttggttgtatttattaatgaacttagttggcttggtgtggaagttatttgtgacat-aaaaatgttagattggatggtccctcatttca |
44232151 |
T |
|
| Q |
539 |
ttgatggaggtttcaggtattggtaaatgatattaaagttgtaatcttgaattttctaataatgtgatatcctgagtgttattttgtcaggtgtaacttt |
638 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44232152 |
ttgatggaggtttcaggcattgataaatgatattaaagttgtaatcttgaattttctaataatgtgatatcctgagtgttattttgtcaggtgtaacttt |
44232251 |
T |
|
| Q |
639 |
atcttgtttctttaccaagcttacaatattttaacaaatgaattataactctgtttggtattattttattacctgctaactttgggaatattttgttatt |
738 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44232252 |
atcttgtttctttaccaagcttacaatattttaacaaatgaattataactctgtttggtattattttattacctgctaactttgggaatattttgttatt |
44232351 |
T |
|
| Q |
739 |
acaggaatttgactctacctatggtccagcttggcattgcattgtaggtactagctttggttcttatgtcactcattctgttggtggtttcttgtatttt |
838 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44232352 |
acaggaatttgactctacctatggtccagcttggcattgcattgtaggtactagctttggttcttatgtcactcattctgttggtggtttcttgtatttt |
44232451 |
T |
|
| Q |
839 |
tccattgacaaagttcacat |
858 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
44232452 |
tccattgacaaagttcacat |
44232471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 15 - 135
Target Start/End: Original strand, 44228162 - 44228282
Alignment:
| Q |
15 |
gcattctcataggccccttccaaattgtcattgtccttttcaatgcaagtgtgatgctgtgacagtaccaaaatcctatagagttgaagattagattatc |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
44228162 |
gcattctcataggccccttccaaattgtcattgtccttttcaatgcaagtgtgatgctgtgacagtaccaaaatcctatagagttgaagatcagattatc |
44228261 |
T |
|
| Q |
115 |
caatttcttactggtcttaat |
135 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
44228262 |
caatttcttactggtcttaat |
44228282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 740 - 855
Target Start/End: Original strand, 11201050 - 11201165
Alignment:
| Q |
740 |
caggaatttgactctacctatggtccagcttggcattgcattgtaggtactagctttggttcttatgtcactcattctgttggtggtttcttgtattttt |
839 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||| |||||||| |||||||| |||||||| ||||| || || |||||||||||||| |||| |||| |
|
|
| T |
11201050 |
caggaatttgactcttgttatggcccagcttggcactgcattgttggtactagttttggttcctatgttacacactctgttggtggttttgtgtactttt |
11201149 |
T |
|
| Q |
840 |
ccattgacaaagttca |
855 |
Q |
| |
|
||||||| || ||||| |
|
|
| T |
11201150 |
ccattgataaggttca |
11201165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 235
Target Start/End: Complemental strand, 34437807 - 34437755
Alignment:
| Q |
183 |
aatgcaaaaatatttcgtagtttcatcactcaaacttgtgctcattcaaaact |
235 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||||| ||||| |||| |
|
|
| T |
34437807 |
aatgcaaaaatatttcatagtatcatcactcaaacttgtgcttattcataact |
34437755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 135
Target Start/End: Complemental strand, 44669186 - 44669066
Alignment:
| Q |
15 |
gcattctcataggccccttccaaattgtcattgtccttttcaatgcaagtgtgatgctgtgacagtaccaaaatcctatagagttgaagattagattatc |
114 |
Q |
| |
|
|||||| |||||||| ||||| || || ||||||| ||||| || || ||||||| | | | |||||| |||||||||||| ||||||| | || || |
|
|
| T |
44669186 |
gcattcacataggccacttcctaactgcaattgtccatttcagtgtaaatgtgatgttattaaagtacctaaatcctatagaattgaagaccaaatcatt |
44669087 |
T |
|
| Q |
115 |
caatttcttactggtcttaat |
135 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
44669086 |
caatttcttactggtcttaat |
44669066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University