View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12733_low_10 (Length: 305)
Name: NF12733_low_10
Description: NF12733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12733_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 260
Target Start/End: Complemental strand, 6438753 - 6438515
Alignment:
| Q |
19 |
aagtacttcatatcggtactagattatgacaagaatttgatttaatttacataccagacttgtacaattacgttaaaaccaaagaataagtcatgagttt |
118 |
Q |
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| T |
6438753 |
aagtacttcatatcggtaatagattatgacaagaatttgatttaatttacataacagacttgtacaattacgttaaaaccaaagaataagtcatgagttt |
6438654 |
T |
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| Q |
119 |
tcaataaaaataacaaagctaccgtaaacaactctacaatacaaataattaaactacaacatctaaaaaaccatgttctttcttcttcaatgtcatttgn |
218 |
Q |
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||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
6438653 |
tcaataacaataacaaagctaccgtaaaca---ctacaatacaaataattaaactacaacatctgaaaaacaatgttctttcttcttcaatgtcatttgg |
6438557 |
T |
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| Q |
219 |
nnnnnntaactatgagggggagatattacatcccagcgagct |
260 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
6438556 |
aaaaaataactatgagggggagatattacatcccagcgagct |
6438515 |
T |
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