View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12733_low_12 (Length: 291)
Name: NF12733_low_12
Description: NF12733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12733_low_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 20 - 278
Target Start/End: Complemental strand, 10457916 - 10457658
Alignment:
| Q |
20 |
aatagtaatagaggaaaccaaataaaaagtggtagctttaggaagggtagctttagaaagggtagctttagattgggaggaaaagatcacacagtggttg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10457916 |
aatagtaatagaggaaaccaaataaaaagtggtagctttaggaagggtagctttagaaagggtagctttagattgggaggaaaagatcacacagtggttg |
10457817 |
T |
|
| Q |
120 |
agttaggtagtattgacacacaaaaacttctcttagaaggtggtggtggagaaataagagagaaacaaaaaactctcaaaaactctctttctattaagca |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10457816 |
agttaggtagtattgacacacaaaaacttctcttagaaggtggtggtggagaaataagagagaaacaaaaaactctcaaaaactctctttctattaagca |
10457717 |
T |
|
| Q |
220 |
gatgaaatccctcactgctctttgtgatactatcttaccttctatcaatgactttgttc |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10457716 |
gatgaaatccctcactgctctttgtgatactatcttaccttctatcaatgactttgttc |
10457658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University