View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12733_low_2 (Length: 716)

Name: NF12733_low_2
Description: NF12733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12733_low_2
NF12733_low_2
[»] chr4 (4 HSPs)
chr4 (20-190)||(167056-167225)
chr4 (383-506)||(167262-167384)
chr4 (194-373)||(2306647-2306827)
chr4 (622-705)||(167481-167564)
[»] chr8 (2 HSPs)
chr8 (191-375)||(21538084-21538269)
chr8 (326-375)||(37633313-37633362)
[»] chr7 (1 HSPs)
chr7 (200-375)||(13332658-13332834)
[»] chr1 (2 HSPs)
chr1 (189-375)||(35840678-35840875)
chr1 (189-269)||(41570406-41570487)
[»] chr6 (1 HSPs)
chr6 (296-375)||(4087928-4088006)


Alignment Details
Target: chr4 (Bit Score: 129; Significance: 2e-66; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 167056 - 167225
Alignment:
Q  20 tgactaccctttaaagaatcaggcaaataaaaccaatcaagttgataagttaatttttcttatgctggatgtgttcttgcacgttttcatttccaaaagg 119  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  167056 tgactacactttaaa-aatcaggcaaataaaaccaatcaagttgataagttaatttttcttatgctggatgtgttcttgcacgttttcatttccaaaagg 167154  T
Q  120 aatgagttcaaataaccggaagnnnnnnnnnngaaataagttggccaattttggcgttgggatatatacat 190  Q
    ||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||    
T  167155 aatgagttcaaataaccggaagaaaaaagaaagaaataagttggccaattttggcgttgggatatatacat 167225  T

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Target: chr4; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 383 - 506
Target Start/End: Original strand, 167262 - 167384
Alignment:
Q  383 atcaagtgattaatgactaaatattcaccacactgagattaataagtggagaatgaattcgagattgcacatacaaattatttgtaatgtctctaccaat 482  Q
    ||||||||||||||||||||||||||||| |||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  167262 atcaagtgattaatgactaaatattcaccgcaca-aggttaataagtggagaatgaattcgagattgcacatacaaattatttgtaatgtctctatcaat 167360  T
Q  483 caagttatgttcactaagacaatg 506  Q
    | |||||||||||||| |||||||    
T  167361 cgagttatgttcactaggacaatg 167384  T

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Target: chr4; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 194 - 373
Target Start/End: Complemental strand, 2306827 - 2306647
Alignment:
Q  194 caatgctattaaccacgaatgaaaataaaccaaaaccacgaattgtactaaa-tgattttcacaaacattattttaatatnnnnnnnnnnnnnnnnnnnn 292  Q
    ||||||||||| |||||||||||| ||||| |||| |||||||| ||||||| |||||||||||||||||||||||||||                        
T  2306827 caatgctattatccacgaatgaaagtaaacgaaaatcacgaattctactaaagtgattttcacaaacattattttaatataaaaataaaaaacaaaagaa 2306728  T
Q  293 gtagcatttggtggaatacacgccatggtataatgtaattcgtatttcccgtagattcagtttcgtgggaaatggcatttc 373  Q
    || |||||||||||||||||||| || ||||| |||||||||||||| |||| ||||||||||||||||||||||||||||    
T  2306727 gttgcatttggtggaatacacgctatcgtatagtgtaattcgtattttccgtggattcagtttcgtgggaaatggcatttc 2306647  T

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Target: chr4; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 622 - 705
Target Start/End: Original strand, 167481 - 167564
Alignment:
Q  622 atgacattttatgcgtcactgaatggataatattcttcataatataacnnnnnnnnttatgctattactttttccaccctatgc 705  Q
    |||||||||||||   ||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||    
T  167481 atgacattttatggaccactgaatggataatattcttcataatataacaaaaaaaattatgctattactttttccaccctatgc 167564  T

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Target: chr8 (Bit Score: 86; Significance: 1e-40; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 191 - 375
Target Start/End: Original strand, 21538084 - 21538269
Alignment:
Q  191 cagcaatgctattaaccacgaatgaaaataaaccaaaaccacgaattgtactaaa-tgattttcacaaacattattttaatatnnnnnnnnnnnnnnnnn 289  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||                     
T  21538084 cagcaatgctattaaccacgaatgaaaataaacgaaaaccacgaattgtactaaagtgattttcacaaatattattttaatataaaaataaaaaacaaaa 21538183  T
Q  290 nnngtagcatttggtggaatacacgccatggtataatgtaattcgtatttcccgtagattcagtttcgtgggaaatggcatttccc 375  Q
       |||||||||||||||||||||||||  ||||| |||||||||||||| |||| |||||||||||||||||||||| |||||||    
T  21538184 aaagtagcatttggtggaatacacgccagcgtatattgtaattcgtattttccgtggattcagtttcgtgggaaatggtatttccc 21538269  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 326 - 375
Target Start/End: Complemental strand, 37633362 - 37633313
Alignment:
Q  326 tgtaattcgtatttcccgtagattcagtttcgtgggaaatggcatttccc 375  Q
    |||||||||||||||||||  ||||| |||||| ||| ||||||||||||    
T  37633362 tgtaattcgtatttcccgtgaattcactttcgtaggatatggcatttccc 37633313  T

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Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 200 - 375
Target Start/End: Original strand, 13332658 - 13332834
Alignment:
Q  200 tattaaccacgaatgaaaataaaccaaaaccacgaattgtactaaa-tgattttcacaaacattattttaatatnnnnnnnnnnnnnnnnnnnngtagca 298  Q
    |||||||||||||| ||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||                    ||||||    
T  13332658 tattaaccacgaattaaaataaacgaaaaccacaaattgtactaaagtgattttcacaaacattattttaatataaaaataaaaaacaaaaaaagtagca 13332757  T
Q  299 tttggtggaatacacgccatggtataatgtaattcgtatttcccgtagattcagtttcgtgggaaatggcatttccc 375  Q
    |||||||||||||| ||||| ||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  13332758 tttggtggaatacaagccatcgtatagtgtaattcgtattttccgtggattcagtttcgtgggaaatggcatttccc 13332834  T

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Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 189 - 375
Target Start/End: Original strand, 35840678 - 35840875
Alignment:
Q  189 atcagcaatgctattaaccacgaatgaaaataaaccaaaaccacgaattgtactaaa---------tgattttcacaaacattattttaatat-nnnnnn 278  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||         ||||||||||||||||| |||||||||           
T  35840678 atcagcaatgctattaaccacgaatgaaaataaacgaaaaccatgaattgtactaaagtgaaaaagtgattttcacaaacatttttttaatataaaaata 35840777  T
Q  279 nnnnnnnnnnnnnngtagcatttggtggaatacacgccatggtataatgtaattcgtatttcccgtagattcagtttcgtgggaaat-ggcatttccc 375  Q
                  |||||||| ||||||||||| ||||| ||||| | |||||||||||| |||| |||||||||||||||||||| ||||||||||    
T  35840778 aaaaaaaataaaatgtagcattcggtggaatacatgccatcgtatagtataattcgtattttccgtggattcagtttcgtgggaaatgggcatttccc 35840875  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 189 - 269
Target Start/End: Original strand, 41570406 - 41570487
Alignment:
Q  189 atcagcaatgctattaaccacgaatgaaaataaaccaaaaccacgaattgtactaaa-tgattttcacaaacattattttaa 269  Q
    ||||||||||||||| |||||||||  ||| |||| ||||| || || ||| ||||| ||||||||||||||||||||||||    
T  41570406 atcagcaatgctattcaccacgaatagaaacaaacgaaaacgacaaactgtgctaaagtgattttcacaaacattattttaa 41570487  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 296 - 375
Target Start/End: Complemental strand, 4088006 - 4087928
Alignment:
Q  296 gcatttggtggaatacacgccatggtataatgtaattcgtatttcccgtagattcagtttcgtgggaaatggcatttccc 375  Q
    ||||||||||||||||||||||| ||||  ||||||||||||||||| | || ||||||| || |||||||  |||||||    
T  4088006 gcatttggtggaatacacgccatcgtattgtgtaattcgtatttcccttgga-tcagtttagtaggaaatgatatttccc 4087928  T

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