View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12733_low_9 (Length: 315)

Name: NF12733_low_9
Description: NF12733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12733_low_9
NF12733_low_9
[»] chr2 (1 HSPs)
chr2 (6-302)||(40424187-40424483)


Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 6 - 302
Target Start/End: Original strand, 40424187 - 40424483
Alignment:
Q  6 actaagtgaatcgcttctataaataaattacagcagaatgcttaatcatgaagttaaacttgaannnnnnngtggaaaacggaaatgaaaatttgaatcg 105  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||| ||||||||||||||||||||||| |    
T  40424187 actaagttaatcgcttctataaataaattacagcagaatgcttaatcatgaagttaaacttgaatttttttgtgaaaaacggaaatgaaaatttgaattg 40424286  T
Q  106 aacttacagaatcgattttgaagaaacgcgcgttatgaattaagttttaagttaagttgttgttgtgctatcgatctcgattgaatgaagagagagcgaa 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40424287 aacttacagaatcgattttgaagaaacgcgcgttatgaattaagttttaagttaagttgttgttgtgctatcgatctcgattgaatgaagagagagcgaa 40424386  T
Q  206 accgagggattatatactctgagaggaatttcacaagacttcaaatggagccttgaccatttttcagttgcagaatgtaaaaataccaagttaccct 302  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40424387 accgagggattatatactgtgagaggaatttcacaagacttcaaatggagccttgaccatttttcagttgcagaatgtaaaaataccaagttaccct 40424483  T

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