View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12734_high_3 (Length: 353)
Name: NF12734_high_3
Description: NF12734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12734_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 16 - 342
Target Start/End: Complemental strand, 12815873 - 12815548
Alignment:
| Q |
16 |
ctataaattaagtagcaccatagcgttttacttttgaagccaagtgaacatctttcatattgctttcaatgctttatataaggctttgtggtgttgaagt |
115 |
Q |
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| T |
12815873 |
ctatatattaagtagtaccatagcgttttacttttgaagccaagtgaacatctttcatattgctttcaatgctttatataaggctttgtggtgttgaagt |
12815774 |
T |
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| Q |
116 |
gaccaccatcaacgaatcctagc-aannnnnnnnnctgtgtgggaaagagccttaataatattgaaaatatctatnnnnnnnntagtgaaattatcgtca |
214 |
Q |
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| T |
12815773 |
gaccaccatcaacgaatcctagcaaatttttctttctgtgtgggaaagagccttaataatattgaaattatcta--aaaaaaatagtgaaattatcgtca |
12815676 |
T |
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| Q |
215 |
attaccttttattattaagcaacattttatttgttatttaagccnnnnnnnttgaatattactttttgctagctgatttaattattttaatttccagaca |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
12815675 |
attaccttttattattaagcaacattttatttgttatttaagccaaaataattgaatattactttttgctagctgatctaattattttaatttccagaca |
12815576 |
T |
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| Q |
315 |
tgtgtatcatatgcttatcgtgattcat |
342 |
Q |
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|||| ||||||||||||||||||||||| |
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| T |
12815575 |
tgtgaatcatatgcttatcgtgattcat |
12815548 |
T |
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