View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12734_high_8 (Length: 248)

Name: NF12734_high_8
Description: NF12734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12734_high_8
NF12734_high_8
[»] chr8 (2 HSPs)
chr8 (1-229)||(28975744-28975974)
chr8 (117-217)||(29041222-29041322)
[»] chr3 (4 HSPs)
chr3 (67-228)||(10304688-10304849)
chr3 (1-219)||(10288913-10289111)
chr3 (1-52)||(10304627-10304679)
chr3 (1-52)||(20950570-20950621)
[»] chr1 (1 HSPs)
chr1 (1-228)||(33066594-33066814)
[»] chr4 (2 HSPs)
chr4 (68-228)||(9282735-9282895)
chr4 (1-52)||(38501623-38501674)
[»] scaffold0041 (1 HSPs)
scaffold0041 (1-52)||(5150-5201)


Alignment Details
Target: chr8 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 28975744 - 28975974
Alignment:
Q  1 ttctcttacacacattgaccccctattcataaattggctgagtaatacgaatnnnnnnnnnnnnnn--tctcaccacggattgtaggttgtggtatattg 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||                ||||||||||||||||||||||||||||||||    
T  28975744 ttctcttacacacattgaccccctattcataaattggctgagtaatacgaatagagagagagagagagtctcaccacggattgtaggttgtggtatattg 28975843  T
Q  99 tcgttggtagctttgccatgcgatgcaacaagtgcttgtgcaaaggaccgcggtggtggttgtggtgctggaaccgccgttgtggacggcagtgccatgg 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28975844 tcgttggtagctttgccatgcgatgcaacaagtgcttgtgcaaaggaccgcggtggtggttgtggtgctggaaccgccgttgtggacggcagtgccatgg 28975943  T
Q  199 gagatggtgcagctttggaggatgcagctgc 229  Q
    |||||||||||||||||||||||||||||||    
T  28975944 gagatggtgcagctttggaggatgcagctgc 28975974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 217
Target Start/End: Complemental strand, 29041322 - 29041222
Alignment:
Q  117 tgcgatgcaacaagtgcttgtgcaaaggaccgcggtggtggttgtggtgctggaaccgccgttgtggacggcagtgccatgggagatggtgcagctttgg 216  Q
    |||||||| || || ||||  |||||||| ||| || ||||||| ||||||| |||||||| ||  || | ||| |||||||||||||||||| ||||||    
T  29041322 tgcgatgccaccagagctttagcaaaggaacgcagttgtggttgaggtgctgaaaccgccgctgctgaagtcagagccatgggagatggtgcaactttgg 29041223  T
Q  217 a 217  Q
    |    
T  29041222 a 29041222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 6e-58; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 67 - 228
Target Start/End: Original strand, 10304688 - 10304849
Alignment:
Q  67 tctcaccacggattgtaggttgtggtatattgtcgttggtagctttgccatgcgatgcaacaagtgcttgtgcaaaggaccgcggtggtggttgtggtgc 166  Q
    ||||||||||||||||||||||||| | |||| ||| |||||||||||| |||||||| |||||||||||||||||||||||||  ||||||||||||||    
T  10304688 tctcaccacggattgtaggttgtggcagattgccgtaggtagctttgccgtgcgatgcgacaagtgcttgtgcaaaggaccgcgacggtggttgtggtgc 10304787  T
Q  167 tggaaccgccgttgtggacggcagtgccatgggagatggtgcagctttggaggatgcagctg 228  Q
    |||||||||||||||||| |||||||||||| |||||||||||||||||||||  |||||||    
T  10304788 tggaaccgccgttgtggagggcagtgccatgagagatggtgcagctttggagggcgcagctg 10304849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 10288913 - 10289111
Alignment:
Q  1 ttctcttacacacattgaccccctattcataaattggctgagtaatacgaatnnnnnnnnnnnnnntctcaccacggattgtaggttgtggtatattgtc 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||              |||||||||| |||||||||||||| | ||||||    
T  10288913 ttctcttacacacattgaccccctgttcataaattggctgagtaatacgaatagagagag------tctcaccacgcattgtaggttgtggcagattgtc 10289006  T
Q  101 gttggtagctttgccatgcgatgcaacaagtgcttgtgcaaaggaccgcggtggtggttgtggtgctggaaccgccgttgtggacggcagtgccatggga 200  Q
                  | |||||||| |||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||| |||||||||||| ||    
T  10289007 --------------cgtgcgatgcgacaagtgcttgtgcaagggaccgcggcggcggttgtggtgctggaaccgccgttgtggagggcagtgccatgaga 10289092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 10304627 - 10304679
Alignment:
Q  1 ttctcttacacacattgaccccc-tattcataaattggctgagtaatacgaat 52  Q
    ||||||||||||||||||||||  | ||||||||||||| |||||||||||||    
T  10304627 ttctcttacacacattgacccctgtgttcataaattggccgagtaatacgaat 10304679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 20950621 - 20950570
Alignment:
Q  1 ttctcttacacacattgaccccctattcataaattggctgagtaatacgaat 52  Q
    |||||||||||||||||||||||| |||||| |  | |||||||||||||||    
T  20950621 ttctcttacacacattgacccccttttcatacaccgactgagtaatacgaat 20950570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 33066594 - 33066814
Alignment:
Q  1 ttctcttacacacattgaccccctattcataaattggctgagtaatacgaatnnnnnnnnnnnnnntctcaccacggattgtaggttgtggtatattgtc 100  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||||||              |||| |||| ||||||||||||||| ||||||||    
T  33066594 ttctcttacacacattgacccc-tgttcataaattggctgagtaatacgaatagagagag------tctccccacagattgtaggttgtggcatattgtc 33066686  T
Q  101 gttggtagctttgccatgcgatgcaacaagtgcttgtgcaaaggaccgcggtggtggttgtggtgctggaaccgccgttgtggacggcagtgccatggga 200  Q
     |||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||  |||||||| ||    
T  33066687 attggtagctttgtcgtgcgatgcaacaagtgcttgtgcaaaggaccgcggcggtggttgtggtgatggaaccgccgttgtggagggttgtgccatgaga 33066786  T
Q  201 gatggtgcagctttggaggatgcagctg 228  Q
     |||  ||||||||||||| ||||||||    
T  33066787 aatgacgcagctttggagggtgcagctg 33066814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 68 - 228
Target Start/End: Complemental strand, 9282895 - 9282735
Alignment:
Q  68 ctcaccacggattgtaggttgtggtatattgtcgttggtagctttgccatgcgatgcaacaagtgcttgtgcaaaggaccgcggtggtggttgtggtgct 167  Q
    ||||| |||| |||||||||| || | ||| || || || |||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9282895 ctcacaacgggttgtaggttgcggcagattatcattagtggcttggctgtgcgatgcaacaagtgcttgtgcaaaggaccgcggtggtggttgtggtgct 9282796  T
Q  168 ggaaccgccgttgtggacggcagtgccatgggagatggtgcagctttggaggatgcagctg 228  Q
    || ||||| | |||||| | ||||||||||||||||||  || ||||||||| || |||||    
T  9282795 gggaccgcagctgtggaagacagtgccatgggagatggcacaactttggagggtgtagctg 9282735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 38501623 - 38501674
Alignment:
Q  1 ttctcttacacacattgaccccctattcataaattggctgagtaatacgaat 52  Q
    |||||||||||||||||||||||| |||||| | ||| ||||||||||||||    
T  38501623 ttctcttacacacattgacccccttttcatacactggttgagtaatacgaat 38501674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 5150 - 5201
Alignment:
Q  1 ttctcttacacacattgaccccctattcataaattggctgagtaatacgaat 52  Q
    |||||||||||||| ||||||||| |||||| |  |||||||||||||||||    
T  5150 ttctcttacacacactgacccccttttcatacaccggctgagtaatacgaat 5201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University