View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12734_low_1 (Length: 618)

Name: NF12734_low_1
Description: NF12734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12734_low_1
NF12734_low_1
[»] chr1 (8 HSPs)
chr1 (1-609)||(43464935-43465543)
chr1 (263-332)||(23287571-23287640)
chr1 (266-327)||(23255782-23255843)
chr1 (263-327)||(23286931-23286995)
chr1 (263-327)||(23256572-23256636)
chr1 (56-120)||(18400129-18400193)
chr1 (56-123)||(24420822-24420889)
chr1 (185-226)||(8404854-8404895)
[»] chr3 (2 HSPs)
chr3 (56-432)||(44766643-44767019)
chr3 (46-432)||(44756550-44756936)
[»] chr8 (1 HSPs)
chr8 (56-432)||(39939980-39940356)
[»] chr5 (2 HSPs)
chr5 (62-123)||(43503088-43503149)
chr5 (185-222)||(38810334-38810371)


Alignment Details
Target: chr1 (Bit Score: 605; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 1 - 609
Target Start/End: Original strand, 43464935 - 43465543
Alignment:
Q  1 gagaccaaaatctgttgccttcatttcagcatcttcaccaggggtatcaaacaagaaattctcaggcttaagatctctgtgcatgacaccaagagaatga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  43464935 gagaccaaaatctgttgccttcatttcagcatcttcaccaggggtatcaaacaagaaattttcaggcttaagatctctgtgcatgacaccaagagaatga 43465034  T
Q  101 catgtctcaacaacaccaacaattgtcttcatcaactttgcagcctctttctcactataatgacccttttgaatgatcttatcaaaaagctcaccaccag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43465035 catgtctcaacaacaccaacaattgtcttcatcaactttgcagcctctttctcactataatgacccttttgaatgatcttatcaaaaagctcaccaccag 43465134  T
Q  201 cacacaactccatcaccaaatgcacaaacacagaatcctcataggttccttgaatttgaaccacatttggatgttcagataaatggtgcatgatctgaat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43465135 cacacaactccatcaccaaatgcacaaacacagaatcctcataggttccttgaatttgaaccacatttggatgttcagataaatggtgcatgatctgaat 43465234  T
Q  301 ctctctccacacatcatcataatcctccttacacaaaagcttcctcttagggattgatttgcatgcatagagtttccctgtggatttgtgtgtgcataga 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43465235 ctctctccacacatcatcataatcctccttacacaaaagcttcctcttagggattgatttgcatgcatagagtttccctgtggatttgtgtgtgcataga 43465334  T
Q  401 tatgttgtcccaaattgtccttgtccaagtttcttcccaagaaggtaatgatcccttaatcttggtgtttgatagggtaacacagcagtgcattttgatg 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43465335 tatgttgtcccaaattgtccttgtccaagtttcttcccaagaaggtaatgatcccttaatcttggtgtttgatagggtaacacagcagtgcattttgatg 43465434  T
Q  501 atgattttgatgatcctaaattatgtttctgcatctcaattcaattgggtttgatctaaagatgtttaagattgtttctttacacttttatgtctctttt 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43465435 atgattttgatgatcctaaattatgtttctgcatctcaattcaattgggtttgatctaaagatgtttaagattgtttctttacacttttatgtctctttt 43465534  T
Q  601 cttctctct 609  Q
    |||||||||    
T  43465535 cttctctct 43465543  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 263 - 332
Target Start/End: Original strand, 23287571 - 23287640
Alignment:
Q  263 acatttggatgttcagataaatggtgcatgatctgaatctctctccacacatcatcataatcctccttac 332  Q
    ||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||| ||||    
T  23287571 acatttggatgttcagataaatggtgcattatttgaatctctctccaaacatcatcataatcctctttac 23287640  T

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Target: chr1; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 266 - 327
Target Start/End: Complemental strand, 23255843 - 23255782
Alignment:
Q  266 tttggatgttcagataaatggtgcatgatctgaatctctctccacacatcatcataatcctc 327  Q
    |||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||    
T  23255843 tttggatgttcagataaatggtgcattatctaaatctctctccagacatcatcataatcctc 23255782  T

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Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 263 - 327
Target Start/End: Complemental strand, 23286995 - 23286931
Alignment:
Q  263 acatttggatgttcagataaatggtgcatgatctgaatctctctccacacatcatcataatcctc 327  Q
    ||||||||||||||||||||||||||||| |||| ||||||| |||| |||||||||||||||||    
T  23286995 acatttggatgttcagataaatggtgcattatctaaatctctgtccaaacatcatcataatcctc 23286931  T

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Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 263 - 327
Target Start/End: Original strand, 23256572 - 23256636
Alignment:
Q  263 acatttggatgttcagataaatggtgcatgatctgaatctctctccacacatcatcataatcctc 327  Q
    |||||||||||||||||||||||||||||  | |||||||||||| | |||||||||||||||||    
T  23256572 acatttggatgttcagataaatggtgcattttttgaatctctctctaaacatcatcataatcctc 23256636  T

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Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 18400193 - 18400129
Alignment:
Q  56 aaattctcaggcttaagatctctgtgcatgacaccaagagaatgacatgtctcaacaacaccaac 120  Q
    |||||||| |||||||| ||||| ||||| ||||||||||||||||| |  ||||||||||||||    
T  18400193 aaattctcgggcttaaggtctctatgcatcacaccaagagaatgacaggcttcaacaacaccaac 18400129  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 56 - 123
Target Start/End: Original strand, 24420822 - 24420889
Alignment:
Q  56 aaattctcaggcttaagatctctgtgcatgacaccaagagaatgacatgtctcaacaacaccaacaat 123  Q
    |||||||| ||||||||||| |  ||||| ||||||||||||||||||| || || ||||||||||||    
T  24420822 aaattctccggcttaagatcgcgatgcattacaccaagagaatgacatgactgaataacaccaacaat 24420889  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 226
Target Start/End: Complemental strand, 8404895 - 8404854
Alignment:
Q  185 aaaagctcaccaccagcacacaactccatcaccaaatgcaca 226  Q
    ||||||||||||||   |||||||||||||||||||||||||    
T  8404895 aaaagctcaccacctaaacacaactccatcaccaaatgcaca 8404854  T

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Target: chr3 (Bit Score: 101; Significance: 9e-50; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 56 - 432
Target Start/End: Complemental strand, 44767019 - 44766643
Alignment:
Q  56 aaattctcaggcttaagatctctgtgcatgacaccaagagaatgacatgtctcaacaacaccaacaattgtcttcatcaactttgcagcctctttctcac 155  Q
    ||||||||||| ||||| ||||| ||||| || |||||||||||||| |  ||||||||  ||||||| ||||| |||||||| ||||| | | ||||||    
T  44767019 aaattctcaggtttaaggtctctatgcataactccaagagaatgacaagcttcaacaacctcaacaatagtcttaatcaacttagcagcttgtctctcac 44766920  T
Q  156 tataatgacccttttgaatgatcttatcaaaaagctcaccaccagcacacaactccatcaccaaatgcacaaacacagaatcctcataggttccttgaat 255  Q
    ||||||||||||| || |  ||| ||||||| |  || |||||  |||| | |||||| |||||||| ||||| |  ||||||||||| ||| |  | ||    
T  44766919 tataatgacccttctgcacaatcctatcaaacaattccccaccttcacaaagctccataaccaaatgaacaaaaaatgaatcctcatatgtttcacggat 44766820  T
Q  256 ttgaaccacatttggatgttcagataaatggtgcatgatctgaatctctctccacacatcatcataatcctccttacacaaaagcttcctcttagggatt 355  Q
        || |||||||||||||| |||||||||||||| || ||||||||||||||  |||||||||||||||| ||||||||||||||| |||| | ||||    
T  44766819 cctcacaacatttggatgttcggataaatggtgcattatttgaatctctctccaagcatcatcataatcctctttacacaaaagcttcttctttgagatt 44766720  T
Q  356 gatttgcatgcatagagtttccctgtggatttgtgtgtgcatagatatgttgtcccaaattgtccttgtccaagttt 432  Q
    |||||||| || |||  | | || || || |||||||||||  |||||||  |||||||||| ||||| || |||||    
T  44766719 gatttgcaagcgtaggttctacccgttgagttgtgtgtgcagtgatatgtgatcccaaattgaccttgacccagttt 44766643  T

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Target: chr3; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 46 - 432
Target Start/End: Complemental strand, 44756936 - 44756550
Alignment:
Q  46 atcaaacaagaaattctcaggcttaagatctctgtgcatgacaccaagagaatgacatgtctcaacaacaccaacaattgtcttcatcaactttgcagcc 145  Q
    ||||||||| ||||||||||| ||||| ||||||||||| || |||||||||||||| |  ||||||||  ||||||| ||  | |||||||| |||||     
T  44756936 atcaaacaaaaaattctcaggtttaaggtctctgtgcataactccaagagaatgacaagcttcaacaacctcaacaatagttctaatcaacttagcagct 44756837  T
Q  146 tctttctcactataatgacccttttgaatgatcttatcaaaaagctcaccaccagcacacaactccatcaccaaatgcacaaacacagaatcctcatagg 245  Q
    | | ||||||||||||| || || || |  ||| ||||||| |  || |||||  |||| | |||||| |||||||| ||| | |  |||||||| || |    
T  44756836 tgtctctcactataatgccctttctgcacaatcctatcaaacaattccccaccttcacaaagctccataaccaaatgaacagaaaacgaatcctcgtaag 44756737  T
Q  246 ttccttgaatttgaaccacatttggatgttcagataaatggtgcatgatctgaatctctctccacacatcatcataatcctccttacacaaaagcttcct 345  Q
    |||| || ||    || |||||||||| |||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| || || ||||||||| |    
T  44756736 ttccatggatcctcacaacatttggattttcagacaaatggtgcattatctgaatctctctccaaacatcatcataatcctctttgcataaaagcttctt 44756637  T
Q  346 cttagggattgatttgcatgcatagagtttccctgtggatttgtgtgtgcatagatatgttgtcccaaattgtccttgtccaagttt 432  Q
    ||| | |||||||||||| || |||  | | || || || |||||| ||||  |||||||  |||||||||| ||||| || |||||    
T  44756636 ctttgagattgatttgcaagcgtaggttctacccgttgagttgtgtatgcagtgatatgtgatcccaaattgaccttgacccagttt 44756550  T

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Target: chr8 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 56 - 432
Target Start/End: Complemental strand, 39940356 - 39939980
Alignment:
Q  56 aaattctcaggcttaagatctctgtgcatgacaccaagagaatgacatgtctcaacaacaccaacaattgtcttcatcaactttgcagcctctttctcac 155  Q
    |||||||| || |||||||| || ||||| ||||||||||| ||||| |  ||||||||  ||||||| ||||| |||||    ||||| | | | ||||    
T  39940356 aaattctccggtttaagatccctatgcataacaccaagagagtgacaagattcaacaacttcaacaatagtcttaatcaaaccagcagcttgtctttcac 39940257  T
Q  156 tataatgacccttttgaatgatcttatcaaaaagctcaccaccagcacacaactccatcaccaaatgcacaaacacagaatcctcataggttccttgaat 255  Q
    |||||||||||||||  |  ||| |||||||||| ||||||||  |||| | |||||| || | ||| |||     |||||||||||| |||||||  ||    
T  39940256 tataatgaccctttttcacaatcctatcaaaaagttcaccaccttcacaaagctccataacaatatgaacagcagtagaatcctcatacgttccttctat 39940157  T
Q  256 ttgaaccacatttggatgttcagataaatggtgcatgatctgaatctctctccacacatcatcataatcctccttacacaaaagcttcctcttagggatt 355  Q
    |  ||| || |  ||||||||||||||||| ||||| ||||||||||||||||| ||||| |||||||| || || || |||||||| ||||| ||||||    
T  39940156 tctaacaacgtgaggatgttcagataaatgatgcattatctgaatctctctccaaacatcttcataatcttctttgcagaaaagctttctctttgggatt 39940057  T
Q  356 gatttgcatgcatagagtttccctgtggatttgtgtgtgcatagatatgttgtcccaaattgtccttgtccaagttt 432  Q
    |||||||| ||| |   |||    || |||||||||||||||||||| ||||| || ||||| ||||| || |||||    
T  39940056 gatttgcaagcaaattttttgttggttgatttgtgtgtgcatagataggttgttccgaattgaccttgaccgagttt 39939980  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 62 - 123
Target Start/End: Complemental strand, 43503149 - 43503088
Alignment:
Q  62 tcaggcttaagatctctgtgcatgacaccaagagaatgacatgtctcaacaacaccaacaat 123  Q
    |||||||| |||||||| ||||| |||||||| |||||||| | ||| ||||||||||||||    
T  43503149 tcaggcttgagatctctatgcataacaccaagggaatgacaggcctcgacaacaccaacaat 43503088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 38810334 - 38810371
Alignment:
Q  185 aaaagctcaccaccagcacacaactccatcaccaaatg 222  Q
    ||||| ||||||||||||||||||||||| ||||||||    
T  38810334 aaaagttcaccaccagcacacaactccataaccaaatg 38810371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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