View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12734_low_13 (Length: 222)
Name: NF12734_low_13
Description: NF12734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12734_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 14305595 - 14305378
Alignment:
| Q |
1 |
gcatggctaacttctccttcatgcacccttttacctatacattcatcttcctctacaccacaattcatacttcaatggttaaggttcattttcctatctc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
14305595 |
gcatggctaacttctccttcatgcacccttttacctttacattcatcttcttctacaccacaattcattcttcaatggttaaggttcattttcctatctc |
14305496 |
T |
|
| Q |
101 |
catgtcctcagagacttctactttctgctcttgattccttgtttttgctctttctcttagcttttgcagctcaaaaactctattcaagattctattcaag |
200 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14305495 |
cttgtcctcagagacttctactttctgctcttgattccttgtttttgctctccctcttagcttttgcagctcaaaaactctattcaagattctattcaag |
14305396 |
T |
|
| Q |
201 |
agcaaacactagctcctc |
218 |
Q |
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|||||||||||||||||| |
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| T |
14305395 |
agcaaacactagctcctc |
14305378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 2 - 218
Target Start/End: Complemental strand, 14321985 - 14321769
Alignment:
| Q |
2 |
catggctaacttctccttcatgcacccttttacctatacattcatcttcctctacaccacaattcatacttcaatggttaaggttcattttcctatctcc |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| || ||||| |||||||||||||||||||||| |||||||| |
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| T |
14321985 |
catggctaacttctccttcatgcacccttttacctgtagattcatcttcctctacaccagaactcataattcaatggttaaggttcattttgctatctcc |
14321886 |
T |
|
| Q |
102 |
atgtcctcagagacttctactttctgctcttgattccttgtttttgctctttctcttagcttttgcagctcaaaaactctattcaagattctattcaaga |
201 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14321885 |
atgtcctcagagacttcttgtttctgctcttgattccttgtttttgctctttctcttagcttttgcagctcaaaaactctattcaagattctattcaaga |
14321786 |
T |
|
| Q |
202 |
gcaaacactagctcctc |
218 |
Q |
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||||||||||||||||| |
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| T |
14321785 |
gcaaacactagctcctc |
14321769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 14283837 - 14283638
Alignment:
| Q |
1 |
gcatggctaacttctccttcatgcacccttttacctatacattcatcttcctctacaccacaattcatacttcaatggttaaggttcattttcctatctc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14283837 |
gcatggctaacttctccttcatgcacccttttacctatacattcatcttcctctacaccacaattcatacttcaatggttaaggttcattttcctatctc |
14283738 |
T |
|
| Q |
101 |
catgtcctcagagacttctactttctgctcttgattccttgtttttgctctttctcttagcttttgcagctcaaaaactctattcaagattctattcaag |
200 |
Q |
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| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
14283737 |
cttgtcctcagagacttcttctttctgctcttgattccttgtttttgctctccctcttagctttttcagctcaaaaactctattcaagattctattcaag |
14283638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 2 - 187
Target Start/End: Complemental strand, 14271048 - 14270875
Alignment:
| Q |
2 |
catggctaacttctccttcatgcacccttttacctatacattcatcttcctctacaccacaattcatacttcaatggttaaggttcattttcctatctcc |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | ||| |||| ||||||||||||||||||||||||| |||||| |
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| T |
14271048 |
catggctaacttctccttcatgcacccttttacctatacattcatc-------aaacc-----tcattcttcaatggttaaggttcattttccgatctcc |
14270961 |
T |
|
| Q |
102 |
atgtcctcagagacttctactttctgctcttgattccttgtttttgctctttctcttagcttttgcagctcaaaaactctattcaa |
187 |
Q |
| |
|
|||||||||||| ||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
14270960 |
atgtcctcagaggcttcttctttcttctcttgattccttgtttttgctctccctcttagcttttgcagctcacaaactctattcaa |
14270875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 2 - 189
Target Start/End: Complemental strand, 25886655 - 25886468
Alignment:
| Q |
2 |
catggctaacttctccttcatgcacccttttacctatacattcatcttcctctacaccacaattcatacttcaatggttaaggttcattttcctatctcc |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||| |
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| T |
25886655 |
catggctaacttctccttcatgcacccttttacctatagattcatcttcctctacaccacaactcatacttcaatggttaacctttcttttcctatctcc |
25886556 |
T |
|
| Q |
102 |
atgtcctcagagacttctactttctgctcttgattccttgtttttgctctttctcttagcttttgcagctcaaaaactctattcaaga |
189 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||| ||| ||||||||||||||| |
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| T |
25886555 |
atgtcctcaaagacttctcctttctgctcttgattccttgtttttgctctccctcttagcttctgcagttcacaaactctattcaaga |
25886468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 2 - 189
Target Start/End: Complemental strand, 44350503 - 44350324
Alignment:
| Q |
2 |
catggctaacttctccttcatgcacccttttacctatacattcatcttcctctacaccacaattcatacttcaatggttaaggttcattttcctatct-c |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||| |||||||||||||||||| || ||||||||||| |
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| T |
44350503 |
catggctaacttctccttcatgcacccttttacctacagatccatcttcctctacaccacaactcatacttcaatggttaacctttcttttcctatctga |
44350404 |
T |
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| Q |
101 |
catgtcctcagagacttctactttctgctcttgattccttgtttttgctctttctcttagcttttgcagctcaaaaactctattcaaga |
189 |
Q |
| |
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||||||||| |||||||| |||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||| |
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| T |
44350403 |
aatgtcctcaaagacttctcctttctgctcttgattcc---------ctctccctcttagcttttgcagctcacaaactctattcaaga |
44350324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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