View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12734_low_2 (Length: 430)
Name: NF12734_low_2
Description: NF12734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12734_low_2 |
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| [»] scaffold1630 (1 HSPs) |
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| [»] scaffold0543 (1 HSPs) |
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| [»] scaffold0492 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 20 - 415
Target Start/End: Complemental strand, 26949156 - 26948759
Alignment:
| Q |
20 |
gagttgaaggaaaacaaacagaaagatgcaaaggcattgttctttctgcaacaagcagtagcagacggtatctttccaagaataatgggagctataagtg |
119 |
Q |
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| T |
26949156 |
gagttgaaggaaaataaacagaaagatgcaaatgcattgttctttctgcaacaagcggtggcagacattatctttccaagaataatgggagctataagtg |
26949057 |
T |
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| Q |
120 |
ccaaagatgcttggggtacactaaaggaggagtttgaaggaagtgacaaggtacgtgccattaaacttcatactctaagacgtgagtttgagttattaaa |
219 |
Q |
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| T |
26949056 |
ccaaagatgcttggggtacactaaaggaggagtttgaaggaagtgacaaggtatgtgccattaaacttcagactctaagacgtgagtttgagttattaaa |
26948957 |
T |
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| Q |
220 |
agtgaa--agtctgagaccgtaaaagaatattataccaagataaaagaactagtgagtcaaatgaaaacttacggggatagtattctcgacaaaagaatt |
317 |
Q |
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| T |
26948956 |
aatgaaagagtttgagaccgtaaaagaatataataccaagataaaagaactagtgagtcaaatgaaaacatacagggataatattctcgacaaaagaatt |
26948857 |
T |
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| Q |
318 |
gttgaggaaattcgaatttatattcctcgtagatatgatgcaattgttaccacgattgtgcaaaccaaatatttgtctactttgtcagtgacagaatt |
415 |
Q |
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| T |
26948856 |
gttgagaaaattctaatttctattcctcgtaagtatgatgcaattgttactacgattgagcaaaccaaagatctgtctactttgttagtgacagaatt |
26948759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1630 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold1630
Description:
Target: scaffold1630; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 299 - 403
Target Start/End: Original strand, 813 - 917
Alignment:
| Q |
299 |
tattctcgacaaaagaattgttgaggaaattcgaatttatattcctcgtagatatgatgcaattgttaccacgattgtgcaaaccaaatatttgtctact |
398 |
Q |
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| T |
813 |
tattctcgacaaaagaattgttgagaaaattctaatttctattccttataagtatgatgcaatcgtttctatgattgagaaaaccaaagatctatctact |
912 |
T |
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| Q |
399 |
ttgtc |
403 |
Q |
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| T |
913 |
ttgtc |
917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0543 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0543
Description:
Target: scaffold0543; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 415
Target Start/End: Original strand, 2637 - 2714
Alignment:
| Q |
338 |
tattcctcgtagatatgatgcaattgttaccacgattgtgcaaaccaaatatttgtctactttgtcagtgacagaatt |
415 |
Q |
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| T |
2637 |
tattcctcataagtatgatgcaattgttgctacaattgagccaaccgaagatttgtctactttgtcagtgacataatt |
2714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0492 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0492
Description:
Target: scaffold0492; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 415
Target Start/End: Original strand, 4183 - 4260
Alignment:
| Q |
338 |
tattcctcgtagatatgatgcaattgttaccacgattgtgcaaaccaaatatttgtctactttgtcagtgacagaatt |
415 |
Q |
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| T |
4183 |
tattcctcataagtatgatgcaattgttgctacaattgagccaaccgaagatttgtctactttgtcagtgacataatt |
4260 |
T |
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