View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12734_low_5 (Length: 304)
Name: NF12734_low_5
Description: NF12734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12734_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 291
Target Start/End: Original strand, 40310884 - 40311157
Alignment:
| Q |
18 |
cccttatctatagaggaagcttggactttgtttaagaagcattcagggatagacgatgagtcctcaaccgatctattaaatgtggcatacgaagttgcaa |
117 |
Q |
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| T |
40310884 |
cccttatctatagaggaagcttggactttgtttaagaagcattcagggatagacgatgagtcctcaactgatctattaaatgtggcatacgaagttgcaa |
40310983 |
T |
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| Q |
118 |
ttgaatgtcaagggttgcctggaacaattaaagatgtggggtcatccttaagaagtaaacctattgaggagtggaaaacatcattagacggcctaagaca |
217 |
Q |
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| T |
40310984 |
ttgaatgtcaagggttgcctggaacaattaaagatgtgggatcatccttaagaagtaaacctattgaggagtggaaaacatcattagacggtctaagaca |
40311083 |
T |
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| Q |
218 |
ttcaatgtctgagtatgatattttcatcagttttagaggaaaagatactcgtgactcttttacgggttttctct |
291 |
Q |
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| T |
40311084 |
ttctatgtctcagtacgatattttcatcagttttagaggaaaagatactcgtgactcttttacgggttttctct |
40311157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 29 - 291
Target Start/End: Original strand, 40326175 - 40326437
Alignment:
| Q |
29 |
agaggaagcttggactttgtttaagaagcattcagggatagacgatgagtcctcaaccgatctattaaatgtggcatacgaagttgcaattgaatgtcaa |
128 |
Q |
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| T |
40326175 |
agaggaagcttggactttgttcaaaaaacattcagggatagataatgagtcttcatccgacctgaaaaatgtggcatacaatgttgctattgaatgtgaa |
40326274 |
T |
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| Q |
129 |
gggttgcctggaacaattaaagatgtggggtcatccttaagaagtaaacctattgaggagtggaaaacatcattagacggcctaagacattcaatgtctg |
228 |
Q |
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| T |
40326275 |
gggttacctagaacaattatagacgcgggatcttccttaagaagcaaacctatcgaggagtggaaagcatcgttagaccatctgaaatattcaaggtctc |
40326374 |
T |
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| Q |
229 |
agtatgatattttcatcagttttagaggaaaagatactcgtgactcttttacgggttttctct |
291 |
Q |
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| T |
40326375 |
aatatgatatttttctaagttttaaaggagaagatactcgctactctttcacaggttttctct |
40326437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 33 - 280
Target Start/End: Complemental strand, 40257291 - 40257044
Alignment:
| Q |
33 |
gaagcttggactttgtttaagaagcattcagggatagacgatgagtcctcaaccgatctattaaatgtggcatacgaagttgcaattgaatgtcaagggt |
132 |
Q |
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| T |
40257291 |
gaagcttggactttgctcaaaaaacattcaggcatagatgatgagtcctcatccgaaatattaaacgtagcacatcaagttgcttatgaatgtgaagggt |
40257192 |
T |
|
| Q |
133 |
tgcctggaacaattaaagatgtggggtcatccttaagaagtaaacctattgaggagtggaaaacatcattagacggcctaagacattcaatgtctgagta |
232 |
Q |
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| T |
40257191 |
tacctggtacaattaaagaagtgggatcttccttaaaaagtaaacctgttgaggagtggaaagaatcattagacagcttgagacattcaatggctcgcta |
40257092 |
T |
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| Q |
233 |
tgatattttcatcagttttagaggaaaagatactcgtgactcttttac |
280 |
Q |
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||||||| |||| ||| ||||| ||||||||||| | |||||||| |
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| T |
40257091 |
ccatatttttctcagctttcgaggagaagatactcgttattcttttac |
40257044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 237 - 291
Target Start/End: Original strand, 40303497 - 40303551
Alignment:
| Q |
237 |
attttcatcagttttagaggaaaagatactcgtgactcttttacgggttttctct |
291 |
Q |
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| T |
40303497 |
attttcatcagttttagaggagaagatactcggtactcttttacgggttttctct |
40303551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 118 - 224
Target Start/End: Complemental strand, 40597865 - 40597759
Alignment:
| Q |
118 |
ttgaatgtcaagggttgcctggaacaattaaagatgtggggtcatccttaagaagtaaacctattgaggagtggaaaacatcattagacggcctaagaca |
217 |
Q |
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||||||| ||||||| || ||||||||||||||||||| || ||||||||| ||||||| |||||||| |||||| ||||| |||| | || ||||| |
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| T |
40597865 |
ttgaatgcgaagggttaccgagaacaattaaagatgtgggatcttccttaagaggtaaaccaattgaggaatggaaagcatcactagatagtctgagaca |
40597766 |
T |
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| Q |
218 |
ttcaatg |
224 |
Q |
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||||||| |
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| T |
40597765 |
ttcaatg |
40597759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 291
Target Start/End: Original strand, 40283455 - 40283509
Alignment:
| Q |
237 |
attttcatcagttttagaggaaaagatactcgtgactcttttacgggttttctct |
291 |
Q |
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|||||| ||||||||||||| ||||||||||| | |||||||| |||||||||| |
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| T |
40283455 |
attttcctcagttttagaggggaagatactcgtcagtcttttacaggttttctct |
40283509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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