View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12734_low_8 (Length: 258)
Name: NF12734_low_8
Description: NF12734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12734_low_8 |
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| [»] scaffold0283 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 9033146 - 9032913
Alignment:
| Q |
17 |
ataatttaggtctggaatcgattttaaaattggaagctaaacataacaatttatgttagaatcatgtttgattaactcaaacgtgattttgggaggtaca |
116 |
Q |
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| T |
9033146 |
ataatttaggtctggaatcgattttaaaattggaagctaaacataacaatttatgttcgaatcatgtttgattaactcaaacgtgattttgggaggtaca |
9033047 |
T |
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| Q |
117 |
aatgtggaactaaacataggatgagtgatccaatattgatctgactctgattacaacaattccaaatctattacatatacaagtctgtcacatatttccc |
216 |
Q |
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| T |
9033046 |
aatgtggaactaaacataggatgagggatccaatattgatctgactctgattataacaattccaaatctattacatatacaagtctgtcacatatttccc |
9032947 |
T |
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| Q |
217 |
tttatcatctgaatgttatttgatgttctgtgct |
250 |
Q |
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| T |
9032946 |
tttatcatctgaatgttatttgatgttctgtgct |
9032913 |
T |
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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 136
Target Start/End: Original strand, 42726016 - 42726124
Alignment:
| Q |
28 |
ctggaatcgattttaaaattggaagctaaacataacaatttatgttagaatcatgtttgattaactcaaacgtgattttgggaggtacaaatgtggaact |
127 |
Q |
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| T |
42726016 |
ctggaatcaattctaaaactagaagtcagacataacaatatatggtcaaatcatgtttgaccaagtcaaatgtgattatgggagatacaaatgtagaacc |
42726115 |
T |
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| Q |
128 |
aaacatagg |
136 |
Q |
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| T |
42726116 |
aaacatagg |
42726124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 136
Target Start/End: Complemental strand, 11458977 - 11458891
Alignment:
| Q |
50 |
aagctaaacataacaatttatgttagaatcatgtttgattaactcaaacgtgattttgggaggtacaaatgtggaactaaacatagg |
136 |
Q |
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| T |
11458977 |
aagccaaacgtaacaatttatggtcaaatcacgtttgattaaccaaaatgtgattctggtaggtaaaaatgtggaaacaaacatagg |
11458891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 145
Target Start/End: Complemental strand, 34933370 - 34933273
Alignment:
| Q |
48 |
ggaagctaaacataacaatttatgttagaatcatgtttgattaactcaaacgtgattttgggaggtacaaatgtggaactaaacataggatgagtgat |
145 |
Q |
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| T |
34933370 |
ggaagccaaacataaaaatttatgatcaaatcacatttgactaacccaaacatgattttgggaggaacaaacatgaaactaaacgtaggctaagtgat |
34933273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0283 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0283
Description:
Target: scaffold0283; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 136
Target Start/End: Original strand, 19990 - 20098
Alignment:
| Q |
28 |
ctggaatcgattttaaaattggaagctaaacataacaatttatgttagaatcatgtttgattaactcaaacgtgattttgggaggtacaaatgtggaact |
127 |
Q |
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| T |
19990 |
ctggaatcaattctaaaactagaagtcagacataacaatatatggtcaaatcatgtttgaccaagtcaaatgtgattatgggagatacaaatgtagaacc |
20089 |
T |
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| Q |
128 |
aaacatagg |
136 |
Q |
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| T |
20090 |
acacatagg |
20098 |
T |
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