View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12735_high_10 (Length: 392)
Name: NF12735_high_10
Description: NF12735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12735_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 32225994 - 32226373
Alignment:
| Q |
1 |
aagatagccataaggcatgctagacaatgctttgggcactctgcctctttaccaccgttactctttgatgctcttatgttggatataaatataatatggt |
100 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32225994 |
aagatagccataaggcgtgctagacaatgctttgggcactctgcctctttaccaccgttactctttgatgctcttatgttggatataaatataatatggt |
32226093 |
T |
|
| Q |
101 |
gttactgttgatgtttttagttacactaaaattgtagaatgtataacatattttatactactaatttgtcccaactttttgcagcatttactataatgct |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32226094 |
gttcctgttgatgtttttagttacactaaaattgtagaatgtttaacatattttatactactaatttgtcccaactttttgcagcatttactataatgct |
32226193 |
T |
|
| Q |
201 |
tttgttcaatgnnnnnnnnnacattaaattagttaataccataaatggccttgacaaatttcattctgtttttaggaaatcgatcataggaggttgagat |
300 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32226194 |
tttgttcaatgttgttttttacattaaattagttaataccataaatggccttgaaaattttcattctgtttttaggaaatcgatcataggaggttgagat |
32226293 |
T |
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| Q |
301 |
tccttttccaaaaggagttgaagaacagtgatgttagctcccttaggagaatggtgttgcctaaggtttggcctttgctt |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32226294 |
tccttttccaaaaggagttgaagaacagtgatgttagctcccttaggagaatggtgttgcctaaggtttggcctttgctt |
32226373 |
T |
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