View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12735_high_13 (Length: 337)
Name: NF12735_high_13
Description: NF12735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12735_high_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 18 - 329
Target Start/End: Original strand, 36002650 - 36002961
Alignment:
| Q |
18 |
agccaatgttgccatacatatttcataatcaaatatatgcatgcattttttaatagaagtaattaagttttcgacttaccttgttatatttcaataaatc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
36002650 |
agccaatgttgccatacatatttcataatcaaatatatgcatgcattttttaatagaagtaattgagttttcgacttaccttgttatatttcaataaatc |
36002749 |
T |
|
| Q |
118 |
atacacttccttaggatcccacaatcgacttctacttccggggtctttaagagattctttcctaacaatctctcttcccatttctactaacaaatcatgc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36002750 |
atacacttccttaggatcccacaatcgacttctacttccggggtctttaagagattctttcctaacaatctctcttcccatttctactaacaaatcatgc |
36002849 |
T |
|
| Q |
218 |
attgtaacttgatcataatgttcaatagttaagagtgctttatatagaaggacttctatcccacttacggcnnnnnnnttgcaagcattcaatagagttg |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
36002850 |
attgtaacttgatcataatgttcaatagttaagagtgctttatatagaaggacttctatcccacttacggcaaaaaaattgcaagcattcaatagagttg |
36002949 |
T |
|
| Q |
318 |
ttatttcatctc |
329 |
Q |
| |
|
|||||||||||| |
|
|
| T |
36002950 |
ttatttcatctc |
36002961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 35 - 219
Target Start/End: Original strand, 36023769 - 36023954
Alignment:
| Q |
35 |
atatttcataatcaaatatatgcatgcattttttaatagaagtaatt-aagttttcgacttaccttgttatatttcaataaatcatacacttccttagga |
133 |
Q |
| |
|
|||||||||||||||||||| |||||| |||| ||||||| |||| || || |||||||| |||||||||||| |||| | |||||| | ||| |
|
|
| T |
36023769 |
atatttcataatcaaatatacacatgcacttttatatagaagaaattgaaaccatccccttacctttttatatttcaatgtatcacaaacttccatggga |
36023868 |
T |
|
| Q |
134 |
tcccacaatcgacttctacttccggggtctttaagagattctttcctaacaatctctcttcccatttctactaacaaatcatgcat |
219 |
Q |
| |
|
||||||||||||||||||||||| |||| |||| |||||| || | |||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
36023869 |
tcccacaatcgacttctacttccagggtttttaggagattgttgcttaacaatctctcgtcccatttctactaacaaatcatgcat |
36023954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 176
Target Start/End: Complemental strand, 35769261 - 35769186
Alignment:
| Q |
101 |
ttatatttcaataaatcatacacttccttaggatcccacaatcgacttctacttccggggtctttaagagattctt |
176 |
Q |
| |
|
|||||||||| || ||| ||||||||||| |||||||||||||||||||| ||||| || ||||| ||||||||| |
|
|
| T |
35769261 |
ttatatttcagtacatcgtacacttccttgggatcccacaatcgacttctgcttccaggatctttgggagattctt |
35769186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 23454322 - 23454362
Alignment:
| Q |
180 |
taacaatctctcttcccatttctactaacaaatcatgcatt |
220 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
23454322 |
taacaatctctcgtcccatttcttgtaacaaatcatgcatt |
23454362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 99 - 220
Target Start/End: Complemental strand, 12896791 - 12896670
Alignment:
| Q |
99 |
tgttatatttcaataaatcatacacttccttaggatcccacaatcgacttctacttccggggtctttaagagattctttcctaacaatctctcttcccat |
198 |
Q |
| |
|
|||||| ||||| || |||||||||||||| |||||||||||||||||||| |||||||||| || ||||||||| | |||||||||||| |||||| |
|
|
| T |
12896791 |
tgttatttttcagtacatcatacacttcctcgggatcccacaatcgacttcttcttccggggttcttgggagattcttgcttaacaatctctcgtcccat |
12896692 |
T |
|
| Q |
199 |
ttctactaacaaatcatgcatt |
220 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
12896691 |
ttctactaacaaatcatgcatt |
12896670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 284
Target Start/End: Complemental strand, 12896634 - 12896600
Alignment:
| Q |
250 |
gagtgctttatatagaaggacttctatcccactta |
284 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |
|
|
| T |
12896634 |
gagtgctttatgtagaaggacttctatcccactta |
12896600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 74 - 220
Target Start/End: Original strand, 16121921 - 16122067
Alignment:
| Q |
74 |
aagtaattaagttttcgacttaccttgttatatttcaataaatcatacacttccttaggatcccacaatcgacttctacttccggggtctttaagagatt |
173 |
Q |
| |
|
|||||||||||| ||| |||||||||||| ||||| |||| ||||| | | || |||||||||||||||||||| ||||||||||||| ||| || |
|
|
| T |
16121921 |
aagtaattaagtcttccacttaccttgttgtatttaaatacttcataaattaactcgggatcccacaatcgacttctttttccggggtctttcggagctt |
16122020 |
T |
|
| Q |
174 |
ctttcctaacaatctctcttcccatttctactaacaaatcatgcatt |
220 |
Q |
| |
|
||| | |||||||||||| |||||||||||| | ||||||||||||| |
|
|
| T |
16122021 |
cttgcttaacaatctctcgtcccatttctacgaccaaatcatgcatt |
16122067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 74 - 220
Target Start/End: Complemental strand, 16337279 - 16337133
Alignment:
| Q |
74 |
aagtaattaagttttcgacttaccttgttatatttcaataaatcatacacttccttaggatcccacaatcgacttctacttccggggtctttaagagatt |
173 |
Q |
| |
|
|||||||||||| ||| |||||||||||| ||||| |||| ||||| | | || |||||||||||||||||||| ||||||||||||| ||| || |
|
|
| T |
16337279 |
aagtaattaagtcttccacttaccttgttgtatttaaatacttcataaattaactcgggatcccacaatcgacttctttttccggggtctttcggagctt |
16337180 |
T |
|
| Q |
174 |
ctttcctaacaatctctcttcccatttctactaacaaatcatgcatt |
220 |
Q |
| |
|
||| | |||||||||||| |||||||||||| | ||||||||||||| |
|
|
| T |
16337179 |
cttgcttaacaatctctcgtcccatttctacgaccaaatcatgcatt |
16337133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 143
Target Start/End: Complemental strand, 32634246 - 32634204
Alignment:
| Q |
101 |
ttatatttcaataaatcatacacttccttaggatcccacaatc |
143 |
Q |
| |
|
|||| |||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
32634246 |
ttatttttcaatacatcataaacttccttaggatcccacaatc |
32634204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University