View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12735_high_14 (Length: 321)

Name: NF12735_high_14
Description: NF12735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12735_high_14
NF12735_high_14
[»] scaffold0150 (1 HSPs)
scaffold0150 (114-302)||(14012-14200)
[»] chr2 (23 HSPs)
chr2 (120-302)||(7867176-7867358)
chr2 (5-113)||(39411954-39412056)
chr2 (113-161)||(7868142-7868190)
chr2 (112-227)||(20991954-20992069)
chr2 (121-266)||(8145393-8145541)
chr2 (121-167)||(23876058-23876104)
chr2 (121-161)||(36390964-36391004)
chr2 (121-167)||(6085696-6085742)
chr2 (120-161)||(5005468-5005509)
chr2 (114-167)||(6084871-6084924)
chr2 (115-160)||(15602822-15602867)
chr2 (120-201)||(20991293-20991374)
chr2 (116-161)||(36391673-36391718)
chr2 (121-229)||(8146588-8146696)
chr2 (114-161)||(2307074-2307121)
chr2 (121-168)||(41519919-41519966)
chr2 (121-167)||(23875247-23875293)
chr2 (127-161)||(37546565-37546599)
chr2 (139-184)||(4386186-4386231)
chr2 (128-229)||(30545368-30545469)
chr2 (121-168)||(24383056-24383104)
chr2 (121-161)||(34617660-34617700)
chr2 (114-154)||(44094825-44094865)
[»] chr7 (21 HSPs)
chr7 (112-183)||(29060718-29060789)
chr7 (121-161)||(24996684-24996724)
chr7 (111-161)||(24995849-24995899)
chr7 (121-161)||(42607088-42607128)
chr7 (121-168)||(32871134-32871181)
chr7 (121-168)||(40320404-40320451)
chr7 (111-157)||(6730162-6730208)
chr7 (127-161)||(27599224-27599258)
chr7 (127-161)||(27600096-27600130)
chr7 (121-167)||(36844619-36844665)
chr7 (108-181)||(23283861-23283934)
chr7 (114-155)||(44540988-44541029)
chr7 (120-156)||(9122656-9122692)
chr7 (121-161)||(40257803-40257843)
chr7 (121-183)||(35771238-35771300)
chr7 (114-167)||(36845197-36845250)
chr7 (120-161)||(44541709-44541750)
chr7 (114-166)||(6729398-6729450)
chr7 (121-193)||(40319613-40319685)
chr7 (121-161)||(43846917-43846956)
chr7 (128-168)||(44909353-44909393)
[»] chr8 (9 HSPs)
chr8 (121-238)||(42346029-42346146)
chr8 (121-190)||(35840502-35840571)
chr8 (120-201)||(42345400-42345481)
chr8 (121-168)||(35943083-35943130)
chr8 (120-201)||(7054096-7054177)
chr8 (128-161)||(43924504-43924537)
chr8 (113-161)||(22939049-22939097)
chr8 (121-161)||(27322588-27322628)
chr8 (121-161)||(37562302-37562342)
[»] chr3 (16 HSPs)
chr3 (121-183)||(33455760-33455822)
chr3 (113-167)||(49161803-49161857)
chr3 (120-170)||(43768032-43768082)
chr3 (121-227)||(43768694-43768800)
chr3 (121-183)||(33454873-33454935)
chr3 (121-167)||(49160994-49161040)
chr3 (121-161)||(45501295-45501335)
chr3 (121-161)||(51421676-51421716)
chr3 (113-156)||(26836345-26836388)
chr3 (121-184)||(31598772-31598835)
chr3 (121-160)||(33968188-33968227)
chr3 (121-168)||(45297556-45297603)
chr3 (128-161)||(38337478-38337511)
chr3 (121-161)||(8652817-8652857)
chr3 (128-228)||(37104366-37104466)
chr3 (120-160)||(44022089-44022129)
[»] chr1 (17 HSPs)
chr1 (121-183)||(48835076-48835138)
chr1 (116-161)||(30466184-30466229)
chr1 (121-161)||(4640535-4640575)
chr1 (121-161)||(4641763-4641803)
chr1 (121-161)||(38931321-38931361)
chr1 (114-161)||(30780985-30781032)
chr1 (121-184)||(34716431-34716494)
chr1 (121-168)||(45922239-45922286)
chr1 (120-161)||(11031437-11031478)
chr1 (120-161)||(11032220-11032261)
chr1 (128-161)||(14924688-14924721)
chr1 (120-161)||(29334220-29334261)
chr1 (120-161)||(36272548-36272589)
chr1 (120-161)||(43316363-43316404)
chr1 (120-161)||(47334901-47334942)
chr1 (121-161)||(294632-294672)
chr1 (121-161)||(47334206-47334246)
[»] chr5 (16 HSPs)
chr5 (121-161)||(4789527-4789567)
chr5 (121-201)||(9923395-9923475)
chr5 (121-161)||(26712389-26712429)
chr5 (121-161)||(26982127-26982167)
chr5 (120-167)||(1970509-1970556)
chr5 (114-181)||(17766563-17766630)
chr5 (120-161)||(9142053-9142094)
chr5 (114-167)||(42650757-42650810)
chr5 (120-168)||(4607130-4607178)
chr5 (121-161)||(6804898-6804938)
chr5 (113-161)||(32943516-32943564)
chr5 (112-227)||(1969777-1969892)
chr5 (113-160)||(6912115-6912162)
chr5 (120-161)||(4555390-4555431)
chr5 (123-160)||(42651581-42651618)
chr5 (120-168)||(9924118-9924165)
[»] chr4 (26 HSPs)
chr4 (121-161)||(25970113-25970153)
chr4 (121-227)||(39429872-39429978)
chr4 (120-161)||(36450734-36450775)
chr4 (123-184)||(47326767-47326828)
chr4 (123-184)||(47341563-47341624)
chr4 (113-227)||(22061329-22061443)
chr4 (127-168)||(34371475-34371516)
chr4 (120-201)||(39429231-39429312)
chr4 (113-166)||(41261121-41261174)
chr4 (128-161)||(47377599-47377632)
chr4 (120-161)||(55514355-55514396)
chr4 (121-161)||(232050-232090)
chr4 (120-168)||(23425201-23425249)
chr4 (120-168)||(39652053-39652101)
chr4 (121-184)||(36013930-36013993)
chr4 (127-161)||(30808634-30808668)
chr4 (111-161)||(33369906-33369956)
chr4 (111-161)||(38009281-38009331)
chr4 (127-161)||(45330578-45330612)
chr4 (120-161)||(25970804-25970845)
chr4 (112-161)||(37639472-37639521)
chr4 (128-161)||(47376866-47376899)
chr4 (121-161)||(23383317-23383357)
chr4 (121-161)||(33370876-33370916)
chr4 (121-161)||(36451428-36451468)
chr4 (113-161)||(54006727-54006775)
[»] scaffold2003 (1 HSPs)
scaffold2003 (112-161)||(532-581)
[»] chr6 (5 HSPs)
chr6 (128-161)||(24125986-24126019)
chr6 (121-156)||(8384024-8384059)
chr6 (121-168)||(16764932-16764979)
chr6 (128-161)||(24126719-24126752)
chr6 (121-161)||(29290130-29290170)
[»] scaffold0129 (1 HSPs)
scaffold0129 (121-161)||(43219-43259)


Alignment Details
Target: scaffold0150 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 114 - 302
Target Start/End: Original strand, 14012 - 14200
Alignment:
Q  114 ggtgagatttagcatgggaaaggggagttgtttcccaccatgggaaaggttttttaaacggtcagattaaacaggtgtattgattttagcttggtttgtc 213  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||| |||||||||||||||||||| ||||    
T  14012 ggtgggatttagcatgggaaaggggagttgtttcccaccatggaaaatgttttataaacggtcagattaaacagatgtattgattttagcttggtctgtc 14111  T
Q  214 cacactatatttttcctttctctttaatattgatcttcaacctccattgtcttgaacatatatcattcctgcaattcccctctcctctg 302  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14112 cacactatattttttctttctctttaatattcatcttcaacctccattgtcttgaacatatatcattcctgcaattcccctctcctctg 14200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 147; Significance: 2e-77; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 120 - 302
Target Start/End: Original strand, 7867176 - 7867358
Alignment:
Q  120 atttagcatgggaaaggggagttgtttcccaccatgggaaaggttttttaaacggtcagattaaacaggtgtattgattttagcttggtttgtccacact 219  Q
    ||||||||||| ||||||||||| ||| | |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  7867176 atttagcatggaaaaggggagttattttctaccatgggaaagattttttaaatggtcagattaaacaggtgtattgattttagcttggtctgtccacact 7867275  T
Q  220 atatttttcctttctctttaatattgatcttcaacctccattgtcttgaacatatatcattcctgcaattcccctctcctctg 302  Q
    |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7867276 atattttttctttctctttaatattgatcttcaacctccattgttttgaacatatatcattcctgcaattcccctctcctctg 7867358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 5 - 113
Target Start/End: Complemental strand, 39412056 - 39411954
Alignment:
Q  5 gagaagcagagagaattctgtcaaagccttttacatgtgaatatgtatgtcctcgagtagtagtagtagtatttatgttagcaggtttccataaccacat 104  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||    
T  39412056 gagaaacagagagaattctgtcaaagccttttacatgtgaatatgtatgtcctcgagtagt------agtatttatgttagcaggtttccataaccacat 39411963  T
Q  105 ttctttaca 113  Q
    |||||||||    
T  39411962 ttctttaca 39411954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 7868190 - 7868142
Alignment:
Q  113 aggtgagatttagcatgggaaaggggagttgtttcccaccatgggaaag 161  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  7868190 aggtgggatttagcatgagaaaggggagttgtttcccaccatgggaaag 7868142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 112 - 227
Target Start/End: Complemental strand, 20992069 - 20991954
Alignment:
Q  112 caggtgagatttagcatgggaaaggggagttgtttcccaccatgggaaaggttttttaaacggtcagattaaacaggtgtattgattttagcttggtttg 211  Q
    |||||| | ||||||||||||| || ||||||||| |||||||||||||| |||||| |||  | |||||||| ||| ||||| |||||| | ||| |||    
T  20992069 caggtggggtttagcatgggaatggagagttgttttccaccatgggaaagtttttttcaaccattagattaaagaggagtattaattttatcatggattg 20991970  T
Q  212 tccacactatattttt 227  Q
     | |||| ||||||||    
T  20991969 cctacaccatattttt 20991954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 121 - 266
Target Start/End: Original strand, 8145393 - 8145541
Alignment:
Q  121 tttagcatgggaaaggggagttgtttcccaccatgggaaaggttttttaaacggtcagattaaacaggtgtattgattttagcttggtttgtccacacta 220  Q
    ||||| ||||||| |  |||||||||||||||||||||||| ||||||  || ||  ||||||| | |  ||||||||||||| |||| ||| ||||| |    
T  8145393 tttagaatgggaatgaagagttgtttcccaccatgggaaagattttttggactgttggattaaagatgattattgattttagcatggtctgttcacacaa 8145492  T
Q  221 tattttt---cctttctctttaatattgatcttcaacctccattgtctt 266  Q
     ||||||   | || | |||||| ||||| |||||||||||||||||||    
T  8145493 gattttttttcattcccctttaacattgaccttcaacctccattgtctt 8145541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 121 - 167
Target Start/End: Complemental strand, 23876104 - 23876058
Alignment:
Q  121 tttagcatgggaaaggggagttgtttcccaccatgggaaaggttttt 167  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||    
T  23876104 tttagcatgggaaatgggagttgtttcccaccatgggaaagattttt 23876058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 36390964 - 36391004
Alignment:
Q  121 tttagcatgggaaaggggagttgtttcccaccatgggaaag 161  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  36390964 tttagcatgggaaagggaagttgtttcccaccatgggaaag 36391004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 167
Target Start/End: Complemental strand, 6085742 - 6085696
Alignment:
Q  121 tttagcatgggaaaggggagttgtttcccaccatgggaaaggttttt 167  Q
    |||||||||||||||| ||||||||||| |||||||||||| |||||    
T  6085742 tttagcatgggaaaggtgagttgtttcctaccatgggaaagattttt 6085696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 161
Target Start/End: Original strand, 5005468 - 5005509
Alignment:
Q  120 atttagcatgggaaaggggagttgtttcccaccatgggaaag 161  Q
    |||||||||||||||||||| |||||||||| ||||||||||    
T  5005468 atttagcatgggaaaggggaattgtttcccatcatgggaaag 5005509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 167
Target Start/End: Original strand, 6084871 - 6084924
Alignment:
Q  114 ggtgagatttagcatgggaaaggggagttgtttcccaccatgggaaaggttttt 167  Q
    |||||| |||| |||||||||||||| |||||||||| |||||||||| |||||    
T  6084871 ggtgaggtttaacatgggaaaggggaattgtttcccatcatgggaaagtttttt 6084924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 160
Target Start/End: Complemental strand, 15602867 - 15602822
Alignment:
Q  115 gtgagatttagcatgggaaaggggagttgtttcccaccatgggaaa 160  Q
    ||||| |||||||| |||||||| ||||||||||||||||||||||    
T  15602867 gtgaggtttagcataggaaagggaagttgtttcccaccatgggaaa 15602822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 20991293 - 20991374
Alignment:
Q  120 atttagcatgggaaaggggagttgtttcccaccatgggaaaggttttttaaacggtcagattaaacaggtgtattgatttta 201  Q
    |||||||||||||| || ||||||||| |||||||||||||| |||||| |||  | |||||||| | | ||||| ||||||    
T  20991293 atttagcatgggaatggagagttgttttccaccatgggaaagtttttttcaaccattagattaaaaatgagtattaatttta 20991374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 161
Target Start/End: Complemental strand, 36391718 - 36391673
Alignment:
Q  116 tgagatttagcatgggaaaggggagttgtttcccaccatgggaaag 161  Q
    |||| ||||| |||||||||||||||||||| ||||||||||||||    
T  36391718 tgaggtttagtatgggaaaggggagttgttttccaccatgggaaag 36391673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 229
Target Start/End: Complemental strand, 8146696 - 8146588
Alignment:
Q  121 tttagcatgggaaaggggagttgtttcccaccatgggaaaggttttttaaacggtcagattaaacaggtgtattgattttagcttggtttgtccacacta 220  Q
    |||| |||||||||||| |||||||| |||  ||||||||| |||||| |||  | |||||||| ||||| ||  ||||||   |||||||||||||| |    
T  8146696 tttaacatgggaaagggaagttgttttccatgatgggaaagttttttttaaccattagattaaagaggtgcatacattttatgatggtttgtccacacca 8146597  T
Q  221 tatttttcc 229  Q
    ||| |||||    
T  8146596 tatatttcc 8146588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 114 - 161
Target Start/End: Complemental strand, 2307121 - 2307074
Alignment:
Q  114 ggtgagatttagcatgggaaaggggagttgtttcccaccatgggaaag 161  Q
    |||||| ||||||||||||||||| |||||||| |||||||| |||||    
T  2307121 ggtgaggtttagcatgggaaagggaagttgttttccaccatgagaaag 2307074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 121 - 168
Target Start/End: Complemental strand, 41519966 - 41519919
Alignment:
Q  121 tttagcatgggaaaggggagttgtttcccaccatgggaaaggtttttt 168  Q
    ||||| ||||||||||| |||| |||||||||||||||||| ||||||    
T  41519966 tttagtatgggaaagggaagttttttcccaccatgggaaagttttttt 41519919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 167
Target Start/End: Original strand, 23875247 - 23875293
Alignment:
Q  121 tttagcatgggaaaggggagttgtttcccaccatgggaaaggttttt 167  Q
    ||||||||||||||||||| ||||||| || |||||||||| |||||    
T  23875247 tttagcatgggaaaggggaattgtttcgcatcatgggaaagtttttt 23875293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 161
Target Start/End: Complemental strand, 37546599 - 37546565
Alignment:
Q  127 atgggaaaggggagttgtttcccaccatgggaaag 161  Q
    |||||||||||||||||||||||| ||||||||||    
T  37546599 atgggaaaggggagttgtttcccatcatgggaaag 37546565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 4386231 - 4386186
Alignment:
Q  139 agttgtttcccaccatgggaaaggttttttaaacggtcagattaaa 184  Q
    ||||||||||||||||||||||| |  |||||||||| ||||||||    
T  4386231 agttgtttcccaccatgggaaagctaatttaaacggttagattaaa 4386186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 229
Target Start/End: Complemental strand, 30545469 - 30545368
Alignment:
Q  128 tgggaaaggggagttgtttcccaccatgggaaaggttttttaaacggtcagattaaacaggtgtattgattttagcttggtttgtccacactatattttt 227  Q
    |||||||||| ||||||||||||  ||||||||| |||||| |||  | |||||||| ||||| |   ||||||   |||||||||||||| |||| |||    
T  30545469 tgggaaagggaagttgtttcccatgatgggaaagttttttttaaccattagattaaagaggtgcacacattttatgatggtttgtccacaccatatattt 30545370  T
Q  228 cc 229  Q
    ||    
T  30545369 cc 30545368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 168
Target Start/End: Complemental strand, 24383104 - 24383056
Alignment:
Q  121 tttagcatgggaaaggggagttgttt-cccaccatgggaaaggtttttt 168  Q
    ||||| ||||||||||| |||||||| ||||||||||||||| ||||||    
T  24383104 tttagtatgggaaagggaagttgtttccccaccatgggaaagttttttt 24383056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 34617660 - 34617700
Alignment:
Q  121 tttagcatgggaaaggggagttgtttcccaccatgggaaag 161  Q
    ||||||||||||||||  | |||||||||||||||||||||    
T  34617660 tttagcatgggaaaggataattgtttcccaccatgggaaag 34617700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 154
Target Start/End: Complemental strand, 44094865 - 44094825
Alignment:
Q  114 ggtgagatttagcatgggaaaggggagttgtttcccaccat 154  Q
    |||| ||||||||||||||||||  ||||||||||||||||    
T  44094865 ggtgggatttagcatgggaaaggaaagttgtttcccaccat 44094825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 112 - 183
Target Start/End: Complemental strand, 29060789 - 29060718
Alignment:
Q  112 caggtgagatttagcatgggaaaggggagttgtttcccaccatgggaaaggttttttaaacggtcagattaa 183  Q
    |||||| | ||||||||||||||||||| ||||||||||||||||||||| |||||| |||||| |||||||    
T  29060789 caggtggggtttagcatgggaaaggggaattgtttcccaccatgggaaagttttttttaacggttagattaa 29060718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 24996724 - 24996684
Alignment:
Q  121 tttagcatgggaaaggggagttgtttcccaccatgggaaag 161  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  24996724 tttagcatgggaaaggggagttgtttcccaccatgggaaag 24996684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 111 - 161
Target Start/End: Original strand, 24995849 - 24995899
Alignment:
Q  111 acaggtgagatttagcatgggaaaggggagttgtttcccaccatgggaaag 161  Q
    ||||||| | ||||| |||||||||||||||||||||||||||||||||||    
T  24995849 acaggtggggtttagaatgggaaaggggagttgtttcccaccatgggaaag 24995899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 42607088 - 42607128
Alignment:
Q  121 tttagcatgggaaaggggagttgtttcccaccatgggaaag 161  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  42607088 tttagcatgggaaaggggaattgtttcccaccatgggaaag 42607128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 168
Target Start/End: Complemental strand, 32871181 - 32871134
Alignment:
Q  121 tttagcatgggaaaggggagttgtttcccaccatgggaaaggtttttt 168  Q
    ||||||||||||| |||||||||||||||||||| |||||| ||||||    
T  32871181 tttagcatgggaatggggagttgtttcccaccataggaaagttttttt 32871134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 168
Target Start/End: Complemental strand, 40320451 - 40320404
Alignment:
Q  121 tttagcatgggaaaggggagttgtttcccaccatgggaaaggtttttt 168  Q
    |||||||||||||||| ||||||||||||||||||| |||| ||||||    
T  40320451 tttagcatgggaaaggagagttgtttcccaccatggaaaagttttttt 40320404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 157
Target Start/End: Complemental strand, 6730208 - 6730162
Alignment:
Q  111 acaggtgagatttagcatgggaaaggggagttgtttcccaccatggg 157  Q
    ||||||| | ||||||||||||||||| |||||||||||||||||||    
T  6730208 acaggtggggtttagcatgggaaagggaagttgtttcccaccatggg 6730162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 161
Target Start/End: Original strand, 27599224 - 27599258
Alignment:
Q  127 atgggaaaggggagttgtttcccaccatgggaaag 161  Q
    |||||||||||||||||||||||||||||||||||    
T  27599224 atgggaaaggggagttgtttcccaccatgggaaag 27599258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 161
Target Start/End: Complemental strand, 27600130 - 27600096
Alignment:
Q  127 atgggaaaggggagttgtttcccaccatgggaaag 161  Q
    |||||||||||||||||||||||||||||||||||    
T  27600130 atgggaaaggggagttgtttcccaccatgggaaag 27600096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 167
Target Start/End: Original strand, 36844619 - 36844665
Alignment:
Q  121 tttagcatgggaaaggggagttgtttcccaccatgggaaaggttttt 167  Q
    |||||||||||||||| |||||||||||||||||| ||||| |||||    
T  36844619 tttagcatgggaaaggtgagttgtttcccaccatgagaaagattttt 36844665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 108 - 181
Target Start/End: Complemental strand, 23283934 - 23283861
Alignment:
Q  108 tttacaggtgagatttagcatgggaaaggggagttgtttcccaccatgggaaaggttttttaaacggtcagatt 181  Q
    ||||||||||| ||||  |||||||||||||| |  |||||||||||||||| | |||||||||| || |||||    
T  23283934 tttacaggtgacatttcacatgggaaaggggaatcctttcccaccatgggaatgtttttttaaacagttagatt 23283861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 155
Target Start/End: Original strand, 44540988 - 44541029
Alignment:
Q  114 ggtgagatttagcatgggaaaggggagttgtttcccaccatg 155  Q
    |||||| |||||||||||||||| ||||||||||||||||||    
T  44540988 ggtgaggtttagcatgggaaaggagagttgtttcccaccatg 44541029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 156
Target Start/End: Original strand, 9122656 - 9122692
Alignment:
Q  120 atttagcatgggaaaggggagttgtttcccaccatgg 156  Q
    |||||||||||||||||| ||||||||||||||||||    
T  9122656 atttagcatgggaaagggaagttgtttcccaccatgg 9122692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 40257843 - 40257803
Alignment:
Q  121 tttagcatgggaaaggggagttgtttcccaccatgggaaag 161  Q
    |||||||||||||| |||||||||||||||||||| |||||    
T  40257843 tttagcatgggaaatgggagttgtttcccaccatgagaaag 40257803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 183
Target Start/End: Complemental strand, 35771300 - 35771238
Alignment:
Q  121 tttagcatgggaaaggggagttgtttcccaccatgggaaaggttttttaaacggtcagattaa 183  Q
    ||||| |||||||||   ||||||||||||||||||||||| |  |||||||||| |||||||    
T  35771300 tttagtatgggaaagcaaagttgtttcccaccatgggaaagctaatttaaacggttagattaa 35771238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 167
Target Start/End: Complemental strand, 36845250 - 36845197
Alignment:
Q  114 ggtgagatttagcatgggaaaggggagttgtttcccaccatgggaaaggttttt 167  Q
    |||||| ||||||||||||||||||| ||||||| || ||||| |||| |||||    
T  36845250 ggtgaggtttagcatgggaaaggggaattgtttctcatcatggaaaagtttttt 36845197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 161
Target Start/End: Complemental strand, 44541750 - 44541709
Alignment:
Q  120 atttagcatgggaaaggggagttgtttcccaccatgggaaag 161  Q
    |||||||||||||||| ||| |||||||| ||||||||||||    
T  44541750 atttagcatgggaaagtggaattgtttccgaccatgggaaag 44541709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 6729398 - 6729450
Alignment:
Q  114 ggtgagatttagcatgggaaaggggagttgtttcccaccatgggaaaggtttt 166  Q
    |||| |||||||||||||||||| || |||||| |||| ||||||||| ||||    
T  6729398 ggtgggatttagcatgggaaaggagaattgttttccactatgggaaagttttt 6729450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 193
Target Start/End: Original strand, 40319613 - 40319685
Alignment:
Q  121 tttagcatgggaaaggggagttgtttcccaccatgggaaaggttttttaaacggtcagattaaacaggtgtat 193  Q
    ||||| ||||||| || ||||| |||||||||||||||||  |||||| ||   |||||||||| ||||||||    
T  40319613 tttagtatgggaatggagagttatttcccaccatgggaaactttttttcaatcatcagattaaagaggtgtat 40319685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 43846956 - 43846917
Alignment:
Q  121 tttagcatgggaaaggggagttgtttcccaccatgggaaag 161  Q
    |||||| ||||||||||||||| ||||||||||||||||||    
T  43846956 tttagcctgggaaaggggagtt-tttcccaccatgggaaag 43846917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 168
Target Start/End: Complemental strand, 44909393 - 44909353
Alignment:
Q  128 tgggaaaggggagttgtttcccaccatgggaaaggtttttt 168  Q
    |||||||||  |||| |||||||||||||||||||||||||    
T  44909393 tgggaaaggtaagttttttcccaccatgggaaaggtttttt 44909353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 121 - 238
Target Start/End: Complemental strand, 42346146 - 42346029
Alignment:
Q  121 tttagcatgggaaaggggagttgtttcccaccatgggaaaggttttttaaacggtcagattaaacaggtgtattgattttagcttggtttgtccacacta 220  Q
    ||||||||||||| || ||||||||||||| |||||||||| |||||| |||  | |||||||| ||| ||||| |||||| | ||| ||| | |||| |    
T  42346146 tttagcatgggaatggagagttgtttcccatcatgggaaagtttttttcaaccattagattaaagaggagtattaattttatcatggattgcctacacca 42346047  T
Q  221 tatttttcctttctcttt 238  Q
    |||||||||||| |||||    
T  42346046 tatttttcctttatcttt 42346029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 121 - 190
Target Start/End: Complemental strand, 35840571 - 35840502
Alignment:
Q  121 tttagcatgggaaaggggagttgtttcccaccatgggaaaggttttttaaacggtcagattaaacaggtg 190  Q
    ||||||||||||||||| ||||||||||||| ||||||||| ||||||  || ||||||||||| |||||    
T  35840571 tttagcatgggaaagggaagttgtttcccacgatgggaaagttttttttgactgtcagattaaagaggtg 35840502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 42345400 - 42345481
Alignment:
Q  120 atttagcatgggaaaggggagttgtttcccaccatgggaaaggttttttaaacggtcagattaaacaggtgtattgatttta 201  Q
    |||||||||||||| || |||||||||||||||||||||||| |||||| |||  | |||||||  ||| ||||| ||||||    
T  42345400 atttagcatgggaatggagagttgtttcccaccatgggaaagtttttttcaaccattagattaaggaggagtattaatttta 42345481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 168
Target Start/End: Original strand, 35943083 - 35943130
Alignment:
Q  121 tttagcatgggaaaggggagttgtttcccaccatgggaaaggtttttt 168  Q
    ||||||||||||||||| ||||||||||||||||||| ||| ||||||    
T  35943083 tttagcatgggaaagggaagttgtttcccaccatggggaagttttttt 35943130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 7054096 - 7054177
Alignment:
Q  120 atttagcatgggaaaggggagttgtttcccaccatgggaaaggttttttaaacggtcagattaaacaggtgtattgatttta 201  Q
    |||||||||||||| || ||||||||||||||||||| |||| |||||| |||  | |||||||  ||| ||||| ||||||    
T  7054096 atttagcatgggaatggagagttgtttcccaccatggaaaagtttttttcaaccattagattaaggaggagtattaatttta 7054177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 161
Target Start/End: Original strand, 43924504 - 43924537
Alignment:
Q  128 tgggaaaggggagttgtttcccaccatgggaaag 161  Q
    |||||||||| |||||||||||||||||||||||    
T  43924504 tgggaaagggaagttgtttcccaccatgggaaag 43924537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 22939097 - 22939049
Alignment:
Q  113 aggtgagatttagcatgggaaaggggagttgtttcccaccatgggaaag 161  Q
    |||||| ||||||| |||||| ||| |||| ||||||||||||||||||    
T  22939097 aggtgacatttagcctgggaatgggtagttctttcccaccatgggaaag 22939049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 27322628 - 27322588
Alignment:
Q  121 tttagcatgggaaaggggagttgtttcccaccatgggaaag 161  Q
    ||||| |||||||| |||||||||||||||| |||||||||    
T  27322628 tttaggatgggaaatgggagttgtttcccacgatgggaaag 27322588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 37562302 - 37562342
Alignment:
Q  121 tttagcatgggaaaggggagttgtttcccaccatgggaaag 161  Q
    |||||||||||||||| || |||||||||||||| ||||||    
T  37562302 tttagcatgggaaaggagaattgtttcccaccataggaaag 37562342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 183
Target Start/End: Complemental strand, 33455822 - 33455760
Alignment:
Q  121 tttagcatgggaaaggggagttgtttcccaccatgggaaaggttttttaaacggtcagattaa 183  Q
    ||||||||||||||||||| |||||||||||||| |||||| |||||| |||||| |||||||    
T  33455822 tttagcatgggaaaggggaattgtttcccaccataggaaagttttttttaacggttagattaa 33455760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 167
Target Start/End: Complemental strand, 49161857 - 49161803
Alignment:
Q  113 aggtgagatttagcatgggaaaggggagttgtttcccaccatgggaaaggttttt 167  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||    
T  49161857 aggtgaggtttagcatgggaaaggggaattgtttcccaccatgggaaagtttttt 49161803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 120 - 170
Target Start/End: Original strand, 43768032 - 43768082
Alignment:
Q  120 atttagcatgggaaaggggagttgtttcccaccatgggaaaggttttttaa 170  Q
    |||||||||||||| || |||||||||||||||||||||||| ||||||||    
T  43768032 atttagcatgggaatggagagttgtttcccaccatgggaaagtttttttaa 43768082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 121 - 227
Target Start/End: Complemental strand, 43768800 - 43768694
Alignment:
Q  121 tttagcatgggaaaggggagttgtttcccaccatgggaaaggttttttaaacggtcagattaaacaggtgtattgattttagcttggtttgtccacacta 220  Q
    ||||||||||||| || ||||||||| |||||||||||||| |||||| |||  | |||||||| ||| ||||| |||||| | ||| ||| | |||| |    
T  43768800 tttagcatgggaatggagagttgttttccaccatgggaaagtttttttcaaccattagattaaagaggagtattaattttatcatggattgcctacacca 43768701  T
Q  221 tattttt 227  Q
    |||||||    
T  43768700 tattttt 43768694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 183
Target Start/End: Original strand, 33454873 - 33454935
Alignment:
Q  121 tttagcatgggaaaggggagttgtttcccaccatgggaaaggttttttaaacggtcagattaa 183  Q
    ||||||||||||||||  | ||||||||||||||| ||||| |||||| |||||| |||||||    
T  33454873 tttagcatgggaaaggaaaattgtttcccaccatgagaaagttttttttaacggttagattaa 33454935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 167
Target Start/End: Original strand, 49160994 - 49161040
Alignment:
Q  121 tttagcatgggaaaggggagttgtttcccaccatgggaaaggttttt 167  Q
    |||||||||||||||||||||||||||| ||||||| |||| |||||    
T  49160994 tttagcatgggaaaggggagttgtttcctaccatggaaaagattttt 49161040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 45501335 - 45501295
Alignment:
Q  121 tttagcatgggaaaggggagttgtttcccaccatgggaaag 161  Q
    ||||| |||||||||||||||||||| ||||||||||||||    
T  45501335 tttagtatgggaaaggggagttgttttccaccatgggaaag 45501295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 51421716 - 51421676
Alignment:
Q  121 tttagcatgggaaaggggagttgtttcccaccatgggaaag 161  Q
    ||||||||| ||||||||| |||||||||||||||||||||    
T  51421716 tttagcatgagaaaggggaattgtttcccaccatgggaaag 51421676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 113 - 156
Target Start/End: Original strand, 26836345 - 26836388
Alignment:
Q  113 aggtgagatttagcatgggaaaggggagttgtttcccaccatgg 156  Q
    |||||| |||||||||||||||||||| |||||||||| |||||    
T  26836345 aggtgacatttagcatgggaaaggggaattgtttcccatcatgg 26836388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 121 - 184
Target Start/End: Complemental strand, 31598835 - 31598772
Alignment:
Q  121 tttagcatgggaaaggggagttgtttcccaccatgggaaaggttttttaaacggtcagattaaa 184  Q
    |||||||||| ||||   ||||||||||||||||||||||| |||||| ||| || ||||||||    
T  31598835 tttagcatggaaaagaaaagttgtttcccaccatgggaaagtttttttgaacagttagattaaa 31598772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 121 - 160
Target Start/End: Original strand, 33968188 - 33968227
Alignment:
Q  121 tttagcatgggaaaggggagttgtttcccaccatgggaaa 160  Q
    ||||||||||||||||| | ||||||||||||||||||||    
T  33968188 tttagcatgggaaagggaacttgtttcccaccatgggaaa 33968227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 121 - 168
Target Start/End: Original strand, 45297556 - 45297603
Alignment:
Q  121 tttagcatgggaaaggggagttgtttcccaccatgggaaaggtttttt 168  Q
    ||||| |||||||||| ||||||||||||| |||||||||| ||||||    
T  45297556 tttagtatgggaaaggagagttgtttcccatcatgggaaagttttttt 45297603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 38337511 - 38337478
Alignment:
Q  128 tgggaaaggggagttgtttcccaccatgggaaag 161  Q
    |||||||||| |||||||||||||||||||||||    
T  38337511 tgggaaagggaagttgtttcccaccatgggaaag 38337478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 8652817 - 8652857
Alignment:
Q  121 tttagcatgggaaaggggagttgtttcccaccatgggaaag 161  Q
    ||||||||||||||||||| | | |||||||||||||||||    
T  8652817 tttagcatgggaaaggggaatcggttcccaccatgggaaag 8652857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 228
Target Start/End: Original strand, 37104366 - 37104466
Alignment:
Q  128 tgggaaaggggagttgtttcccaccatgggaaaggttttttaaacggtcagattaaacaggtgtattgattttagcttggtttgtccacactatattttt 227  Q
    ||||||||| || || ||| |||||||||||||| ||||||||||  | ||||||||  ||   |||||||||| | | | ||||||||||||||| |||    
T  37104366 tgggaaaggagactttttttccaccatgggaaagtttttttaaaccattagattaaaagggaacattgattttatcataggttgtccacactatatcttt 37104465  T
Q  228 c 228  Q
    |    
T  37104466 c 37104466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 160
Target Start/End: Complemental strand, 44022129 - 44022089
Alignment:
Q  120 atttagcatgggaaaggggagttgtttcccaccatgggaaa 160  Q
    ||||||||||| ||||| ||||||||| |||||||||||||    
T  44022129 atttagcatggaaaaggagagttgttttccaccatgggaaa 44022089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 183
Target Start/End: Complemental strand, 48835138 - 48835076
Alignment:
Q  121 tttagcatgggaaaggggagttgtttcccaccatgggaaaggttttttaaacggtcagattaa 183  Q
    ||||||||||||||||||| |||||| |||||||||||||| |||||| |||||| |||||||    
T  48835138 tttagcatgggaaaggggaattgttttccaccatgggaaagttttttttaacggttagattaa 48835076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 30466184 - 30466229
Alignment:
Q  116 tgagatttagcatgggaaaggggagttgtttcccaccatgggaaag 161  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||    
T  30466184 tgaggtttagcatgggaatggggagttgtttcccaccatgggaaag 30466229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 4640535 - 4640575
Alignment:
Q  121 tttagcatgggaaaggggagttgtttcccaccatgggaaag 161  Q
    |||||||||| |||||||| |||||||||||||||||||||    
T  4640535 tttagcatggtaaaggggaattgtttcccaccatgggaaag 4640575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 4641803 - 4641763
Alignment:
Q  121 tttagcatgggaaaggggagttgtttcccaccatgggaaag 161  Q
    ||||||||||||||||||| ||||||||||||| |||||||    
T  4641803 tttagcatgggaaaggggaattgtttcccaccaagggaaag 4641763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 38931321 - 38931361
Alignment:
Q  121 tttagcatgggaaaggggagttgtttcccaccatgggaaag 161  Q
    ||||||||| ||||||||| |||||||||||||||||||||    
T  38931321 tttagcatgagaaaggggaattgtttcccaccatgggaaag 38931361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 114 - 161
Target Start/End: Complemental strand, 30781032 - 30780985
Alignment:
Q  114 ggtgagatttagcatgggaaaggggagttgtttcccaccatgggaaag 161  Q
    |||||| |||| ||||||||||| ||||||||||||| ||||||||||    
T  30781032 ggtgaggtttaacatgggaaaggagagttgtttcccatcatgggaaag 30780985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 121 - 184
Target Start/End: Original strand, 34716431 - 34716494
Alignment:
Q  121 tttagcatgggaaaggggagttgtttcccaccatgggaaaggttttttaaacggtcagattaaa 184  Q
    ||||||||||||| || ||||||||||||| ||||| |||| |||||| || | ||||||||||    
T  34716431 tttagcatgggaatggagagttgtttcccatcatggaaaagcttttttcaaggatcagattaaa 34716494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 121 - 168
Target Start/End: Original strand, 45922239 - 45922286
Alignment:
Q  121 tttagcatgggaaaggggagttgtttcccaccatgggaaaggtttttt 168  Q
    |||| ||||||||||||  |||||||||||||||||||||| ||||||    
T  45922239 tttaacatgggaaagggaggttgtttcccaccatgggaaagttttttt 45922286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 161
Target Start/End: Original strand, 11031437 - 11031478
Alignment:
Q  120 atttagcatgggaaaggggagttgtttcccaccatgggaaag 161  Q
    ||||| |||||||||||||| | |||||||||||||||||||    
T  11031437 atttaacatgggaaaggggaatagtttcccaccatgggaaag 11031478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 161
Target Start/End: Complemental strand, 11032261 - 11032220
Alignment:
Q  120 atttagcatgggaaaggggagttgtttcccaccatgggaaag 161  Q
    ||||| |||||||||||||| | |||||||||||||||||||    
T  11032261 atttaacatgggaaaggggaatagtttcccaccatgggaaag 11032220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 161
Target Start/End: Original strand, 14924688 - 14924721
Alignment:
Q  128 tgggaaaggggagttgtttcccaccatgggaaag 161  Q
    |||||||||| |||||||||||||||||||||||    
T  14924688 tgggaaagggaagttgtttcccaccatgggaaag 14924721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 161
Target Start/End: Original strand, 29334220 - 29334261
Alignment:
Q  120 atttagcatgggaaaggggagttgtttcccaccatgggaaag 161  Q
    |||||||||||||| ||  |||||||||||||||||||||||    
T  29334220 atttagcatgggaatggatagttgtttcccaccatgggaaag 29334261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 161
Target Start/End: Complemental strand, 36272589 - 36272548
Alignment:
Q  120 atttagcatgggaaaggggagttgtttcccaccatgggaaag 161  Q
    |||||||||||||| ||| | |||||||||||||||||||||    
T  36272589 atttagcatgggaatgggaacttgtttcccaccatgggaaag 36272548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 161
Target Start/End: Original strand, 43316363 - 43316404
Alignment:
Q  120 atttagcatgggaaaggggagttgtttcccaccatgggaaag 161  Q
    |||||||||||||| ||  |||||||||||||||||||||||    
T  43316363 atttagcatgggaatggatagttgtttcccaccatgggaaag 43316404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 161
Target Start/End: Complemental strand, 47334942 - 47334901
Alignment:
Q  120 atttagcatgggaaaggggagttgtttcccaccatgggaaag 161  Q
    |||||| |||||||| ||||||||||||||||||| ||||||    
T  47334942 atttagtatgggaaaagggagttgtttcccaccataggaaag 47334901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 294632 - 294672
Alignment:
Q  121 tttagcatgggaaaggggagttgtttcccaccatgggaaag 161  Q
    ||||| ||||||| |||||||| ||||||||||||||||||    
T  294632 tttagtatgggaatggggagttttttcccaccatgggaaag 294672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 47334206 - 47334246
Alignment:
Q  121 tttagcatgggaaaggggagttgtttcccaccatgggaaag 161  Q
    |||||| ||| |||||||||||||||||||| |||||||||    
T  47334206 tttagcctggaaaaggggagttgtttcccacaatgggaaag 47334246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 4789527 - 4789567
Alignment:
Q  121 tttagcatgggaaaggggagttgtttcccaccatgggaaag 161  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  4789527 tttagcatgggaaaggggagttgtttcccaccatgggaaag 4789567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 121 - 201
Target Start/End: Original strand, 9923395 - 9923475
Alignment:
Q  121 tttagcatgggaaaggggagttgtttcccaccatgggaaaggttttttaaacggtcagattaaacaggtgtattgatttta 201  Q
    ||||||||||||| || ||||||||||||||||||| |||| |||||| |||  | |||||||| ||| ||||| ||||||    
T  9923395 tttagcatgggaatggagagttgtttcccaccatggaaaagtttttttcaaccattagattaaagaggagtattaatttta 9923475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 26712429 - 26712389
Alignment:
Q  121 tttagcatgggaaaggggagttgtttcccaccatgggaaag 161  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  26712429 tttagcatgggaaagggaagttgtttcccaccatgggaaag 26712389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 26982167 - 26982127
Alignment:
Q  121 tttagcatgggaaaggggagttgtttcccaccatgggaaag 161  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  26982167 tttagcatgggaaagggaagttgtttcccaccatgggaaag 26982127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 167
Target Start/End: Complemental strand, 1970556 - 1970509
Alignment:
Q  120 atttagcatgggaaaggggagttgtttcccaccatgggaaaggttttt 167  Q
    |||||||||||||| || |||||||||||||||||||||||| |||||    
T  1970556 atttagcatgggaatggagagttgtttcccaccatgggaaagtttttt 1970509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 114 - 181
Target Start/End: Original strand, 17766563 - 17766630
Alignment:
Q  114 ggtgagatttagcatgggaaaggggagttgtttcccaccatgggaaaggttttttaaacggtcagatt 181  Q
    |||||||||||| ||||||||||  ||||||||||||||||| ||||| ||||||  ||| |||||||    
T  17766563 ggtgagatttagtatgggaaaggatagttgtttcccaccatgagaaagttttttttgacgatcagatt 17766630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 161
Target Start/End: Original strand, 9142053 - 9142094
Alignment:
Q  120 atttagcatgggaaaggggagttgtttcccaccatgggaaag 161  Q
    |||||| ||||||||||| |||||||||||||||||||||||    
T  9142053 atttagtatgggaaagggaagttgtttcccaccatgggaaag 9142094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 167
Target Start/End: Original strand, 42650757 - 42650810
Alignment:
Q  114 ggtgagatttagcatgggaaaggggagttgtttcccaccatgggaaaggttttt 167  Q
    |||||| ||||||||||||||||||| ||||||  ||||||||||||| |||||    
T  42650757 ggtgaggtttagcatgggaaaggggaattgtttttcaccatgggaaagtttttt 42650810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 4607178 - 4607130
Alignment:
Q  120 atttagcatgggaaaggggagttgtttcccaccatgggaaaggtttttt 168  Q
    |||||||||||||| || |||||||||||||||||| ||||| ||||||    
T  4607178 atttagcatgggaatggagagttgtttcccaccatgagaaagttttttt 4607130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 6804898 - 6804938
Alignment:
Q  121 tttagcatgggaaaggggagttgtttcccaccatgggaaag 161  Q
    ||||||||||||||| |||||||||||||||||||| ||||    
T  6804898 tttagcatgggaaagaggagttgtttcccaccatggaaaag 6804938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 32943516 - 32943564
Alignment:
Q  113 aggtgagatttagcatgggaaaggggagttgtttcccaccatgggaaag 161  Q
    ||||| ||||||||||||||||||  | |||||||||||||||||||||    
T  32943516 aggtgggatttagcatgggaaaggatatttgtttcccaccatgggaaag 32943564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 112 - 227
Target Start/End: Original strand, 1969777 - 1969892
Alignment:
Q  112 caggtgagatttagcatgggaaaggggagttgtttcccaccatgggaaaggttttttaaacggtcagattaaacaggtgtattgattttagcttggtttg 211  Q
    |||||| | ||||||||||||| || |||||||||   |||||||||||| |||||| |||  | |||||||| ||| ||||| |||||| | ||| |||    
T  1969777 caggtggggtttagcatgggaatggagagttgttttttaccatgggaaagtttttttcaaccattagattaaagaggagtattaattttatcatggattg 1969876  T
Q  212 tccacactatattttt 227  Q
     | |||| ||||||||    
T  1969877 cctacaccatattttt 1969892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 113 - 160
Target Start/End: Original strand, 6912115 - 6912162
Alignment:
Q  113 aggtgagatttagcatgggaaaggggagttgtttcccaccatgggaaa 160  Q
    |||||||||||| |||||||| || ||||||||| |||||||||||||    
T  6912115 aggtgagatttaacatgggaatggagagttgttttccaccatgggaaa 6912162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 161
Target Start/End: Complemental strand, 4555431 - 4555390
Alignment:
Q  120 atttagcatgggaaaggggagttgtttcccaccatgggaaag 161  Q
    |||||| ||||||||||| |||||||||| ||||||||||||    
T  4555431 atttagtatgggaaagggaagttgtttcctaccatgggaaag 4555390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 160
Target Start/End: Complemental strand, 42651618 - 42651581
Alignment:
Q  123 tagcatgggaaaggggagttgtttcccaccatgggaaa 160  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  42651618 tagcatgggaaagggaagttgtttcccaccataggaaa 42651581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 9924165 - 9924118
Alignment:
Q  120 atttagcatgggaaaggggagttgtttcccaccatgggaaaggtttttt 168  Q
    |||||||||||||  || |||||||||||||||||||||||| ||||||    
T  9924165 atttagcatgggat-ggagagttgtttcccaccatgggaaagttttttt 9924118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 25970113 - 25970153
Alignment:
Q  121 tttagcatgggaaaggggagttgtttcccaccatgggaaag 161  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  25970113 tttagcatgggaaaggggagttgtttcccaccatgggaaag 25970153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 121 - 227
Target Start/End: Complemental strand, 39429978 - 39429872
Alignment:
Q  121 tttagcatgggaaaggggagttgtttcccaccatgggaaaggttttttaaacggtcagattaaacaggtgtattgattttagcttggtttgtccacacta 220  Q
    ||||||||||||| || |||||||||||||||||||||||| |||||| |||  | | |||||| ||| ||||| |||||| | ||| ||| | |||| |    
T  39429978 tttagcatgggaatggagagttgtttcccaccatgggaaagtttttttcaaccattaaattaaagaggagtattaattttatcatggattgcctacacca 39429879  T
Q  221 tattttt 227  Q
    |||||||    
T  39429878 tattttt 39429872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 161
Target Start/End: Original strand, 36450734 - 36450775
Alignment:
Q  120 atttagcatgggaaaggggagttgtttcccaccatgggaaag 161  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  36450734 atttagcatgggaaaggggagttgttttccaccatgggaaag 36450775  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 184
Target Start/End: Complemental strand, 47326828 - 47326767
Alignment:
Q  123 tagcatgggaaaggggagttgtttcccaccatgggaaaggttttttaaacggtcagattaaa 184  Q
    ||||||||||||||  ||||||||||||||||||||||| |||||| ||| || ||||||||    
T  47326828 tagcatgggaaaggaaagttgtttcccaccatgggaaagtttttttgaacagttagattaaa 47326767  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 184
Target Start/End: Complemental strand, 47341624 - 47341563
Alignment:
Q  123 tagcatgggaaaggggagttgtttcccaccatgggaaaggttttttaaacggtcagattaaa 184  Q
    ||||||||||||||  ||||||||||||||||||||||| |||||| ||| || ||||||||    
T  47341624 tagcatgggaaaggaaagttgtttcccaccatgggaaagtttttttgaacagttagattaaa 47341563  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 227
Target Start/End: Original strand, 22061329 - 22061443
Alignment:
Q  113 aggtgagatttagcatgggaaaggggagttgtttcccaccatgggaaaggttttttaaacggtcagattaaacaggtgtattgattttagcttggtttgt 212  Q
    ||||||| |||||||| |||| ||| |||||||| |||||||||||||| |||||| |||  | |||||||| ||| ||||  |||||| | |||  |||    
T  22061329 aggtgaggtttagcattggaaggggaagttgttttccaccatgggaaagtttttttcaaccattagattaaagaggagtatgaattttatcatggactgt 22061428  T
Q  213 ccacactatattttt 227  Q
     ||||| ||||||||    
T  22061429 tcacaccatattttt 22061443  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 127 - 168
Target Start/End: Original strand, 34371475 - 34371516
Alignment:
Q  127 atgggaaaggggagttgtttcccaccatgggaaaggtttttt 168  Q
    ||||||||||||| ||||||||||||||||||||| ||||||    
T  34371475 atgggaaaggggaattgtttcccaccatgggaaagttttttt 34371516  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 39429231 - 39429312
Alignment:
Q  120 atttagcatgggaaaggggagttgtttcccaccatgggaaaggttttttaaacggtcagattaaacaggtgtattgatttta 201  Q
    |||||||||||||| || ||||||||||| |||||||||||| |||||| |||  | |||||||  ||| ||||| ||||||    
T  39429231 atttagcatgggaatggagagttgtttcctaccatgggaaagtttttttcaaccattagattaaggaggagtattaatttta 39429312  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 113 - 166
Target Start/End: Original strand, 41261121 - 41261174
Alignment:
Q  113 aggtgagatttagcatgggaaaggggagttgtttcccaccatgggaaaggtttt 166  Q
    ||||||| ||||||||||||||||  |||||||| |||||||||||||| ||||    
T  41261121 aggtgaggtttagcatgggaaaggaaagttgttttccaccatgggaaagttttt 41261174  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 47377632 - 47377599
Alignment:
Q  128 tgggaaaggggagttgtttcccaccatgggaaag 161  Q
    ||||||||||||||||||||||||||||||||||    
T  47377632 tgggaaaggggagttgtttcccaccatgggaaag 47377599  T

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Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 161
Target Start/End: Complemental strand, 55514396 - 55514355
Alignment:
Q  120 atttagcatgggaaaggggagttgtttcccaccatgggaaag 161  Q
    |||||||||||||||||  |||||||||||||||||||||||    
T  55514396 atttagcatgggaaaggaaagttgtttcccaccatgggaaag 55514355  T

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Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 232090 - 232050
Alignment:
Q  121 tttagcatgggaaaggggagttgtttcccaccatgggaaag 161  Q
    ||||| ||||||||||| |||||||||||||||||||||||    
T  232090 tttagtatgggaaagggaagttgtttcccaccatgggaaag 232050  T

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Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 23425249 - 23425201
Alignment:
Q  120 atttagcatgggaaaggggagttgtttcccaccatgggaaaggtttttt 168  Q
    |||||| ||||||| || |||||||||||||||||||||||| ||||||    
T  23425249 atttagtatgggaatggagagttgtttcccaccatgggaaagttttttt 23425201  T

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Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 39652101 - 39652053
Alignment:
Q  120 atttagcatgggaaaggggagttgtttcccaccatgggaaaggtttttt 168  Q
    |||||||||||||| || |||||||||| ||||||||||||| ||||||    
T  39652101 atttagcatgggaatggagagttgtttctcaccatgggaaagttttttt 39652053  T

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Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 121 - 184
Target Start/End: Complemental strand, 36013993 - 36013930
Alignment:
Q  121 tttagcatgggaaaggggagttgtttcccaccatgggaaaggttttttaaacggtcagattaaa 184  Q
    |||||||||||||| |  |||||||| |||||||||||||| |||||| ||| || ||||||||    
T  36013993 tttagcatgggaaatgaaagttgtttaccaccatgggaaagtttttttgaacagttagattaaa 36013930  T

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Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 161
Target Start/End: Original strand, 30808634 - 30808668
Alignment:
Q  127 atgggaaaggggagttgtttcccaccatgggaaag 161  Q
    |||||||||| ||||||||||||||||||||||||    
T  30808634 atgggaaaggagagttgtttcccaccatgggaaag 30808668  T

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Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 161
Target Start/End: Original strand, 33369906 - 33369956
Alignment:
Q  111 acaggtgagatttagcatgggaaaggggagttgtttcccaccatgggaaag 161  Q
    ||||||| |||||||||||||||| |  | |||||||||||||||||||||    
T  33369906 acaggtgggatttagcatgggaaatgatatttgtttcccaccatgggaaag 33369956  T

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Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 161
Target Start/End: Original strand, 38009281 - 38009331
Alignment:
Q  111 acaggtgagatttagcatgggaaaggggagttgtttcccaccatgggaaag 161  Q
    ||||||| ||||||||||||||||||  | |||||||||||||||| ||||    
T  38009281 acaggtgggatttagcatgggaaaggataattgtttcccaccatggaaaag 38009331  T

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Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 161
Target Start/End: Original strand, 45330578 - 45330612
Alignment:
Q  127 atgggaaaggggagttgtttcccaccatgggaaag 161  Q
    |||||||||||||||||||||||||||||| ||||    
T  45330578 atgggaaaggggagttgtttcccaccatggaaaag 45330612  T

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Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 161
Target Start/End: Complemental strand, 25970845 - 25970804
Alignment:
Q  120 atttagcatgggaaaggggagttgtttcccaccatgggaaag 161  Q
    |||||| |||||||| |||||||||||||||||||| |||||    
T  25970845 atttagtatgggaaaagggagttgtttcccaccatgagaaag 25970804  T

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Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 37639521 - 37639472
Alignment:
Q  112 caggtgagatttagcatgggaaaggggagttgtttcccaccatgggaaag 161  Q
    ||||||||||||||||||||||| |  |||||||| ||||||||| ||||    
T  37639521 caggtgagatttagcatgggaaaagttagttgttttccaccatggaaaag 37639472  T

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Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 161
Target Start/End: Original strand, 47376866 - 47376899
Alignment:
Q  128 tgggaaaggggagttgtttcccaccatgggaaag 161  Q
    ||||||||||||||||||||||| ||||||||||    
T  47376866 tgggaaaggggagttgtttcccatcatgggaaag 47376899  T

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Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 23383317 - 23383357
Alignment:
Q  121 tttagcatgggaaaggggagttgtttcccaccatgggaaag 161  Q
    ||||| ||| |||||| ||||||||||||||||||||||||    
T  23383317 tttagaatgagaaaggagagttgtttcccaccatgggaaag 23383357  T

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Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 33370916 - 33370876
Alignment:
Q  121 tttagcatgggaaaggggagttgtttcccaccatgggaaag 161  Q
    ||||||||||||||||  | |||||||||||||||||||||    
T  33370916 tttagcatgggaaaggatacttgtttcccaccatgggaaag 33370876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 36451468 - 36451428
Alignment:
Q  121 tttagcatgggaaaggggagttgtttcccaccatgggaaag 161  Q
    ||||||||||||||| ||||||||||| |||||||| ||||    
T  36451468 tttagcatgggaaagaggagttgtttctcaccatggaaaag 36451428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 54006727 - 54006775
Alignment:
Q  113 aggtgagatttagcatgggaaaggggagttgtttcccaccatgggaaag 161  Q
    ||||||| ||||| ||||||| ||| |||||||||||| ||||||||||    
T  54006727 aggtgaggtttagtatgggaatgggaagttgtttcccatcatgggaaag 54006775  T

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Target: scaffold2003 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold2003
Description:

Target: scaffold2003; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 581 - 532
Alignment:
Q  112 caggtgagatttagcatgggaaaggggagttgtttcccaccatgggaaag 161  Q
    |||||| |||| ||||||||||||||||||||||||||||||||| ||||    
T  581 caggtgggattaagcatgggaaaggggagttgtttcccaccatggaaaag 532  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 161
Target Start/End: Original strand, 24125986 - 24126019
Alignment:
Q  128 tgggaaaggggagttgtttcccaccatgggaaag 161  Q
    ||||||||||||||||||||||||||||||||||    
T  24125986 tgggaaaggggagttgtttcccaccatgggaaag 24126019  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 121 - 156
Target Start/End: Complemental strand, 8384059 - 8384024
Alignment:
Q  121 tttagcatgggaaaggggagttgtttcccaccatgg 156  Q
    ||||||||||||||| ||||||||||||||||||||    
T  8384059 tttagcatgggaaagtggagttgtttcccaccatgg 8384024  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 121 - 168
Target Start/End: Original strand, 16764932 - 16764979
Alignment:
Q  121 tttagcatgggaaaggggagttgtttcccaccatgggaaaggtttttt 168  Q
    ||||||||||||||||  ||||||||||||||||||| ||| ||||||    
T  16764932 tttagcatgggaaaggaaagttgtttcccaccatggggaagttttttt 16764979  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 24126752 - 24126719
Alignment:
Q  128 tgggaaaggggagttgtttcccaccatgggaaag 161  Q
    ||||||||||||||||||||||| ||||||||||    
T  24126752 tgggaaaggggagttgtttcccatcatgggaaag 24126719  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 29290130 - 29290170
Alignment:
Q  121 tttagcatgggaaaggggagttgtttcccaccatgggaaag 161  Q
    |||||||||| || || ||||||||||||||||||||||||    
T  29290130 tttagcatggaaatggagagttgtttcccaccatgggaaag 29290170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 43259 - 43219
Alignment:
Q  121 tttagcatgggaaaggggagttgtttcccaccatgggaaag 161  Q
    ||||| |||| ||||||||||||||||||| ||||||||||    
T  43259 tttagtatggaaaaggggagttgtttcccatcatgggaaag 43219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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