View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12735_high_2 (Length: 603)
Name: NF12735_high_2
Description: NF12735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12735_high_2 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 18 - 591
Target Start/End: Original strand, 1701769 - 1702342
Alignment:
| Q |
18 |
aataaaagtcataagcttcctttttcagtttcttctatcaaaaccgtagctcctcttgaactgttattttctgatgtttggggaccttctcctatcactt |
117 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1701769 |
aataaaagtcataagcttcctttttctgtttcttctatcaaaaccacagctcctcttgaactgttattttctgatgtttggggaccctctcctatcactt |
1701868 |
T |
|
| Q |
118 |
cagttaatggttacaaatattatcttgtgtttgttgatcattttactcaatattcttggatttatctgttaaaaagtaaaactgatgttgttactatatt |
217 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
1701869 |
cagttcatggttacaaatattatcttgtgtttgttgatcattttactcgatattcttggatttatccgttaaaaagtaaaactgatgttgttactatatt |
1701968 |
T |
|
| Q |
218 |
tccaaattttcattcaaaagttgaaactatgttttcatacaaagttaaatccctctacaccgatggtggcactgaatacataaaactcaagccatatctt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1701969 |
tccaaattttcattcaaaagttgaaactatgttttcatacaaagttaaatccctctacaccgatggtggcactgaatacataaaactcaagccatatctt |
1702068 |
T |
|
| Q |
318 |
aactctcatggtatatctcacgatatcagcccaccgtacactcccgaacatattggtattgcagaacgcaaacatcgtcatatagtagaaacatcgctca |
417 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1702069 |
aactctcatggtatatctcactatatcagcccaccgtacactcccgaacatattggtattgcagaacgcaaacatcgtcatatagtagaaacatcgctca |
1702168 |
T |
|
| Q |
418 |
ccctcatgtctcactctcatgttccacaaaaattctggtgttatgccttccaaatggcggtgtatttaataaatcgcatgacaacaacacatcttaaaaa |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
1702169 |
ccctcatgtctcactctcatgttccacaaaaattctggtgttatgccttccaaatggcggtgtatttaataaatcgcatgccaacaacacatcttaaaaa |
1702268 |
T |
|
| Q |
518 |
caaatgtcctaatgaaattctgtttggttccactcctaattatcttaatcttggagtctttggatatctgtgct |
591 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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|
| T |
1702269 |
caaatgtcctcatgaaattctgtttggttccactcctaattatcttaatcttcgagtctttggatgtctgtgct |
1702342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 181342 - 181434
Alignment:
| Q |
18 |
aataaaagtcataagcttcctttttcagtttcttctatcaaaaccgtagctcctcttgaactgttattttctgatgtttggggaccttctcct |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
181342 |
aataaaagtcataagcttcctttttcagtttcttctatcaaaaccgcagctcctcttgaactgttattttctgatgtttggggaccttctcct |
181434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 18 - 475
Target Start/End: Original strand, 5400505 - 5400962
Alignment:
| Q |
18 |
aataaaagtcataagcttcctttttcagtttcttctatcaaaaccgtagctcctcttgaactgttattttctgatgtttggggaccttctcctatcactt |
117 |
Q |
| |
|
|||||||||||||| ||||||||||| | ||||| || |||| | |||| ||||||| | || ||||||||||||||||| || ||||| || | |
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|
| T |
5400505 |
aataaaagtcataaacttcctttttctatatcttcaatacaaactttctctccatttgaactcattttctctgatgtttggggaccatcccctataacgt |
5400604 |
T |
|
| Q |
118 |
cagttaatggttacaaatattatcttgtgtttgttgatcattttactcaatattcttggatttatctgttaaaaagtaaaactgatgttgttactatatt |
217 |
Q |
| |
|
| |||||||||||| ||||||||||| |||||||| ||||| |||| || | |||||||||| | |||| ||||||||||| | || ||||| |
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|
| T |
5400605 |
ccattaatggttacaggtattatcttgtctttgttgaccatttcactcgctacacgtggatttatccacttaaaaacaaaactgatgtagctatcatatt |
5400704 |
T |
|
| Q |
218 |
tccaaattttcattcaaaagttgaaactatgttttcatacaaagttaaatccctctacaccgatggtggcactgaatacataaaactcaagccatatctt |
317 |
Q |
| |
|
||| | |||||||| ||| |||||| | || || ||||||| ||||| | ||||| |||||||| ||||||||| | ||||||||||||||| | |
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|
| T |
5400705 |
tcctcaatttcattctaaaattgaaaactttttctcccacaaagtcaaatctatttacactgatggtggaactgaatactttaaactcaagccatatttc |
5400804 |
T |
|
| Q |
318 |
aactctcatggtatatctcacgatatcagcccaccgtacactcccgaacatattggtattgcagaacgcaaacatcgtcatatagtagaaacatcgctca |
417 |
Q |
| |
|
|| | ||||| ||||| || | || |||||||| || ||||| ||||| ||||| ||||| ||||||||||| || |||||||||||||| | |||| |
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|
| T |
5400805 |
aatacacatggaatatcccattacattagcccaccttatactcctgaacacattggcattgctgaacgcaaacaccgccatatagtagaaactgctctca |
5400904 |
T |
|
| Q |
418 |
ccctcatgtctcactctcatgttccacaaaaattctggtgttatgccttccaaatggc |
475 |
Q |
| |
|
| || | ||||||||| ||| || |||| ||||||||||||||| || |||||||| |
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|
| T |
5400905 |
cacttctctctcactcttctgtacctcaaacattctggtgttatgcttttcaaatggc |
5400962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 18 - 475
Target Start/End: Original strand, 3541480 - 3541937
Alignment:
| Q |
18 |
aataaaagtcataagcttcctttttcagtttcttctatcaaaaccgtagctcctcttgaactgttattttctgatgtttggggaccttctcctatcactt |
117 |
Q |
| |
|
|||||||||||||| ||||||||||| | ||||| || |||| | |||| ||||||| | || ||||||||||||||||| || ||||| || | |
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|
| T |
3541480 |
aataaaagtcataaacttcctttttctatatcttcaatacaaactttctctccatttgaactcattttctctgatgtttggggaccatcccctataacgt |
3541579 |
T |
|
| Q |
118 |
cagttaatggttacaaatattatcttgtgtttgttgatcattttactcaatattcttggatttatctgttaaaaagtaaaactgatgttgttactatatt |
217 |
Q |
| |
|
| | ||||||||||| ||||||||||| |||||||| ||||| |||| || | |||||||||| | |||| ||||||||||| | || ||||| |
|
|
| T |
3541580 |
ccatcaatggttacaagtattatcttgtctttgttgaccatttcactcgctacacgtggatttatccacttaaaaacaaaactgatgtagctatcatatt |
3541679 |
T |
|
| Q |
218 |
tccaaattttcattcaaaagttgaaactatgttttcatacaaagttaaatccctctacaccgatggtggcactgaatacataaaactcaagccatatctt |
317 |
Q |
| |
|
||| | |||||||| ||| |||||| | || || ||||||| ||||| | ||||| |||||||| ||||||||| | ||||||||||||||| | |
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|
| T |
3541680 |
tcctcaatttcattctaaaattgaaaactttttctcccacaaagtcaaatctatttacactgatggtggaactgaatactttaaactcaagccatatttc |
3541779 |
T |
|
| Q |
318 |
aactctcatggtatatctcacgatatcagcccaccgtacactcccgaacatattggtattgcagaacgcaaacatcgtcatatagtagaaacatcgctca |
417 |
Q |
| |
|
|| | ||||| ||||| || | || |||||||| || ||||| ||||| ||||| ||||| ||||||||||| || |||||||||||||| | |||| |
|
|
| T |
3541780 |
aatacacatggaatatcccattacattagcccaccttatactcctgaacacattggcattgctgaacgcaaacaccgccatatagtagaaactgctctca |
3541879 |
T |
|
| Q |
418 |
ccctcatgtctcactctcatgttccacaaaaattctggtgttatgccttccaaatggc |
475 |
Q |
| |
|
| || | ||||||||| ||| || |||| ||||||||||||||| || |||||||| |
|
|
| T |
3541880 |
cacttctctctcactcttctgtacctcaaacattctggtgttatgcttttcaaatggc |
3541937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 198
Target Start/End: Original strand, 31098805 - 31098935
Alignment:
| Q |
68 |
tcctcttgaactgttattttctgatgtttggggaccttctcctatcacttcagttaatggttacaaatattatcttgtgtttgttgatcattttactcaa |
167 |
Q |
| |
|
|||||||||||| | ||||||||||||||| |||| ||||| || | | | | ||| |||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
31098805 |
tcctcttgaactcattttttctgatgtttggagaccctctccaattaacactatcagtggatacaaatattatcttgtgttcgttgatcattttactaga |
31098904 |
T |
|
| Q |
168 |
tattcttggatttatctgttaaaaagtaaaa |
198 |
Q |
| |
|
||| |||||||||| |||||||||||| |
|
|
| T |
31098905 |
tataaatggatttatcccctaaaaagtaaaa |
31098935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 87 - 409
Target Start/End: Complemental strand, 26592600 - 26592278
Alignment:
| Q |
87 |
tctgatgtttggggaccttctcctatcacttcagttaatggttacaaatattatcttgtgtttgttgatcattttactcaatattcttggatttatctgt |
186 |
Q |
| |
|
||||||||||||||||| || ||||| || || |||||||||| | ||| ||||||||||||||||| || |||||| |||| | |||||||||| |
|
|
| T |
26592600 |
tctgatgtttggggaccatcccctataacatccattaatggttatagatactatcttgtgtttgttgaccactttactagatatacatggatttatcctc |
26592501 |
T |
|
| Q |
187 |
taaaaagtaaaactgatgttgttactatatttccaaattttcattcaaaagttgaaactatgttttcatacaaagttaaatccctctacaccgatggtgg |
286 |
Q |
| |
|
| | ||| |||||| |||| || | || || ||| | |||||| | ||| |||||| | | || || |||| || ||||| | ||||| |||||||| |
|
|
| T |
26592500 |
ttagaagcaaaactaatgtagtagccatcttcccacaatttcatactaaaattgaaaatcttttctccaacaaggtaaaatcaatttacacagatggtgg |
26592401 |
T |
|
| Q |
287 |
cactgaatacataaaactcaagccatatcttaactctcatggtatatctcacgatatcagcccaccgtacactcccgaacatattggtattgcagaacgc |
386 |
Q |
| |
|
|||||||| || ||||||| | ||| | || | ||||| ||||| || | || || ||||| |||||||| ||||||||||| |||||||||||| |
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|
| T |
26592400 |
aactgaatatatctaactcaaatcttatttcaatacacatggaatatcacattacataagtccaccttacactcctgaacatattggcattgcagaacgc |
26592301 |
T |
|
| Q |
387 |
aaacatcgtcatatagtagaaac |
409 |
Q |
| |
|
|||||| | |||||||| ||||| |
|
|
| T |
26592300 |
aaacattgccatatagtcgaaac |
26592278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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