View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12735_high_20 (Length: 237)
Name: NF12735_high_20
Description: NF12735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12735_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 31340655 - 31340790
Alignment:
| Q |
18 |
aatactacagttaaccgtgtacaaatattttgtggtttattttaggtttagtttttaataagatattaagcagcggacggaataatttcctcatgagtat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31340655 |
aatactacagttaaccgtgtacaaatattttgtggtttattttaggtttagtttttaataagatattaagcagcggacggaataatttcctcatgagtat |
31340754 |
T |
|
| Q |
118 |
atcttccccacagagcaaagcataacacatcaagag |
153 |
Q |
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| T |
31340755 |
atcttccccacagagcaaagcatagcacatcaagag |
31340790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 31333925 - 31334060
Alignment:
| Q |
18 |
aatactacagttaaccgtgtacaaatattttgtggtttattttaggtttagtttttaataagatattaagcagcggacggaataatttcctcatgagtat |
117 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31333925 |
aatactacaattaaccgtgtacaaatattttgtggtttattttaggtttagtttttaataagatattaagcagcggacggaataatttcctcatgagtat |
31334024 |
T |
|
| Q |
118 |
atcttccccacagagcaaagcataacacatcaagag |
153 |
Q |
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| T |
31334025 |
atcttccccacagagcaaagcatagcacatcaagag |
31334060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 4684160 - 4684295
Alignment:
| Q |
18 |
aatactacagttaaccgtgtacaaatattttgtggtttattttaggtttagtttttaataagatattaagcagcggacggaataatttcctcatgagtat |
117 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4684160 |
aatactacatttaaccgtgtacaaatattttgtggtttattttaggtttagtttttaataagatattaagcagcggacggaataatttcctcatgagtat |
4684259 |
T |
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| Q |
118 |
atcttccccacagagcaaagcataacacatcaagag |
153 |
Q |
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| T |
4684260 |
atcttccccacagagcaaagcatagcacatcaagag |
4684295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 22 - 153
Target Start/End: Complemental strand, 1656624 - 1656493
Alignment:
| Q |
22 |
ctacagttaaccgtgtacaaatattttgtggtttattttaggtttagtttttaataagatattaagcagcggacggaataatttcctcatgagtatatct |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1656624 |
ctacagttaaccgtgtacaaatattttgtggtttattttaggtttagtttttaataagatattaagcagcggacggaataatttcctcatgagtatatct |
1656525 |
T |
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| Q |
122 |
tccccacagagcaaagcataacacatcaagag |
153 |
Q |
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|||||||||||||||||||| ||||||||||| |
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| T |
1656524 |
tccccacagagcaaagcatagcacatcaagag |
1656493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 35 - 153
Target Start/End: Complemental strand, 643939 - 643821
Alignment:
| Q |
35 |
tgtacaaatattttgtggtttattttaggtttagtttttaataagatattaagcagcggacggaataatttcctcatgagtatatcttccccacagagca |
134 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
643939 |
tgtacaaatattttgtggtttattttaggtttagtttttaataagatattgagcagcggacgacataatttcctcatgagtatatcttccccatagagca |
643840 |
T |
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| Q |
135 |
aagcataacacatcaagag |
153 |
Q |
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||||||| ||||| ||||| |
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| T |
643839 |
aagcatagcacatgaagag |
643821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 169 - 231
Target Start/End: Complemental strand, 643640 - 643577
Alignment:
| Q |
169 |
caataggaaatgcttaagatt-aagtctgaatttctagccccatcattttctctctgctcctcc |
231 |
Q |
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|||||| |||||||||||||| ||||||||||||||||||||||| |||||||| | ||||||| |
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| T |
643640 |
caatagcaaatgcttaagatttaagtctgaatttctagccccatcgttttctctgttctcctcc |
643577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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