View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12735_high_4 (Length: 520)
Name: NF12735_high_4
Description: NF12735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12735_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 18 - 508
Target Start/End: Original strand, 24185720 - 24186210
Alignment:
| Q |
18 |
gaagcatcatgactcagaagaagaccatggccagaatcagaagaaatcagttatcaccaaagtaaaggagaaggccaagaagttacgccacactctcagc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24185720 |
gaagcatcatgactcagaagaagaccatggccagaatcagaagaaatcagttatcaccaaagtaaaggagaaggccaagaagttacgccacactctcagc |
24185819 |
T |
|
| Q |
118 |
aagaaaaaacacgaggactggaccgctactagtccctctgcgggagcagagtcagaaggtgatggagcagaagaagatgctgaatatcatggagctccga |
217 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24185820 |
aagaaaaaacacgaggattggaccgctactagtccctctgcgggagcagggtcagaaggtgatggagcagaagaagatgctgaatatcatggagctccga |
24185919 |
T |
|
| Q |
218 |
gtaataaaataaatatataattgtcttctcttaatccttttttatttatatacatataattgttgtctcaaattaatatttcagtgtatgaatccgagat |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24185920 |
gtaataaaataaatatataattgtcttctcttaattcttttttatttatatacatataattgttgtctcaaattaatatttcagtgtatgaatccgagat |
24186019 |
T |
|
| Q |
318 |
ggcacctgaaggatacaaagaaaatgtcaggcaacattcaagaatgagtccaagaagcccacagacacatgttctgtcaaacaatgagaaacttggatta |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24186020 |
ggcacctgaaggatacaaagaaaatgtcaggcaacattcaagaatgagtccaagaagcccacagacacatgttctgtcaaacaatgagaaacttggatta |
24186119 |
T |
|
| Q |
418 |
gaacaagctagagaaaagacgctgagtcgttcactttcgaggaaaacaacacatccagctgcaactgctgctacttctactacactctctg |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24186120 |
gaacaagctagagaaaagacgctgagtcgttcactttcgaggaaaacaacacatccagctgcaactgctgctacttctactacactctctg |
24186210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University