View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12735_high_5 (Length: 515)

Name: NF12735_high_5
Description: NF12735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12735_high_5
NF12735_high_5
[»] chr4 (18 HSPs)
chr4 (1-60)||(49951338-49951397)
chr4 (1-60)||(2064878-2064937)
chr4 (1-60)||(18442248-18442307)
chr4 (1-55)||(28537890-28537944)
chr4 (1-58)||(51735074-51735131)
chr4 (16-60)||(55735034-55735078)
chr4 (1-58)||(29655769-29655826)
chr4 (1-58)||(37245955-37246012)
chr4 (1-58)||(21321554-21321611)
chr4 (1-58)||(28426210-28426267)
chr4 (1-58)||(41835414-41835471)
chr4 (1-58)||(49119503-49119560)
chr4 (160-203)||(55050495-55050538)
chr4 (159-244)||(37531568-37531653)
chr4 (154-203)||(26289575-26289624)
chr4 (1-58)||(26422705-26422762)
chr4 (1-58)||(47226433-47226490)
chr4 (13-58)||(56065656-56065701)
[»] chr5 (13 HSPs)
chr5 (1-58)||(25730835-25730892)
chr5 (10-58)||(4268126-4268174)
chr5 (1-60)||(20204980-20205039)
chr5 (4-58)||(15988855-15988909)
chr5 (10-58)||(11375625-11375673)
chr5 (154-203)||(7332517-7332566)
chr5 (1-58)||(22767360-22767417)
chr5 (160-203)||(4062609-4062652)
chr5 (1-52)||(37448158-37448209)
chr5 (1-58)||(8388113-8388170)
chr5 (1-54)||(27292465-27292518)
chr5 (154-203)||(29865451-29865500)
chr5 (153-217)||(23570923-23570987)
[»] chr7 (9 HSPs)
chr7 (1-60)||(16731958-16732017)
chr7 (1-60)||(17710092-17710151)
chr7 (1-53)||(1581648-1581700)
chr7 (10-58)||(16098517-16098565)
chr7 (1-51)||(30824578-30824628)
chr7 (1-58)||(9328705-9328762)
chr7 (21-60)||(17877433-17877472)
chr7 (21-58)||(3601688-3601725)
chr7 (154-203)||(29913035-29913084)
[»] chr6 (9 HSPs)
chr6 (1-60)||(14680187-14680246)
chr6 (10-58)||(29368168-29368216)
chr6 (4-58)||(15606100-15606154)
chr6 (154-203)||(20872927-20872976)
chr6 (159-220)||(10190094-10190155)
chr6 (1-58)||(19690982-19691039)
chr6 (341-394)||(20875134-20875187)
chr6 (154-203)||(23409666-23409715)
chr6 (30-58)||(15053307-15053335)
[»] chr2 (8 HSPs)
chr2 (1-55)||(18345590-18345644)
chr2 (1-58)||(88586-88643)
chr2 (9-58)||(34696015-34696064)
chr2 (9-58)||(34718427-34718476)
chr2 (10-58)||(12130750-12130798)
chr2 (1-58)||(9709956-9710013)
chr2 (68-133)||(14909792-14909857)
chr2 (159-220)||(17681963-17682024)
[»] chr1 (10 HSPs)
chr1 (1-58)||(44527280-44527337)
chr1 (1-52)||(16816903-16816954)
chr1 (1-58)||(25682678-25682735)
chr1 (1-58)||(52109481-52109538)
chr1 (1-52)||(4395191-4395242)
chr1 (1-54)||(5609370-5609423)
chr1 (153-217)||(7843858-7843922)
chr1 (159-244)||(28962045-28962130)
chr1 (154-203)||(17006071-17006120)
chr1 (153-217)||(19103057-19103121)
[»] chr3 (9 HSPs)
chr3 (1-55)||(53497062-53497116)
chr3 (1-57)||(647314-647370)
chr3 (10-58)||(2615520-2615568)
chr3 (153-217)||(40057302-40057366)
chr3 (159-253)||(29195386-29195481)
chr3 (154-203)||(19816981-19817030)
chr3 (1-58)||(42340380-42340437)
chr3 (153-217)||(20789994-20790058)
chr3 (325-365)||(30170078-30170118)
[»] chr8 (14 HSPs)
chr8 (1-58)||(478159-478216)
chr8 (1-58)||(7127250-7127307)
chr8 (1-58)||(13415050-13415107)
chr8 (154-203)||(37250745-37250794)
chr8 (1-58)||(40588833-40588890)
chr8 (162-218)||(10279439-10279495)
chr8 (159-203)||(16307352-16307396)
chr8 (160-207)||(759896-759943)
chr8 (5-58)||(8451230-8451283)
chr8 (160-205)||(10901017-10901062)
chr8 (154-203)||(16249616-16249665)
chr8 (154-203)||(16312826-16312875)
chr8 (1-58)||(23853959-23854016)
chr8 (153-217)||(40886538-40886602)
[»] scaffold0119 (1 HSPs)
scaffold0119 (154-203)||(41038-41087)


Alignment Details
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 49951397 - 49951338
Alignment:
Q  1 atctgttcacatcagcaaattgaagggcctcgagtaaggctactgcctccccctccaata 60  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  49951397 atctgttcgcatcagcaaagtgaagggcctcgagtaaggctactgcctccccctccaata 49951338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 2064937 - 2064878
Alignment:
Q  1 atctgttcacatcagcaaattgaagggcctcgagtaaggctactgcctccccctccaata 60  Q
    |||||||| |||||||||| |||||||| ||||||||||||||||||||||||| |||||    
T  2064937 atctgttctcatcagcaaagtgaagggcgtcgagtaaggctactgcctcccccttcaata 2064878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 18442248 - 18442307
Alignment:
Q  1 atctgttcacatcagcaaattgaagggcctcgagtaaggctactgcctccccctccaata 60  Q
    |||||||| || ||||||| || |||||||||||||||||||||||||||||||||||||    
T  18442248 atctgttcgcaacagcaaagtgtagggcctcgagtaaggctactgcctccccctccaata 18442307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 28537890 - 28537944
Alignment:
Q  1 atctgttcacatcagcaaattgaagggcctcgagtaaggctactgcctccccctc 55  Q
    |||||||| ||||| |||| |||||||||||||||||||||||||||||||||||    
T  28537890 atctgttcgcatcaacaaagtgaagggcctcgagtaaggctactgcctccccctc 28537944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 51735074 - 51735131
Alignment:
Q  1 atctgttcacatcagcaaattgaagggcctcgagtaaggctactgcctccccctccaa 58  Q
    |||| |||||||||||||| |||| ||| |||||||||||||||||||||||||||||    
T  51735074 atctattcacatcagcaaagtgaatggcatcgagtaaggctactgcctccccctccaa 51735131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 55735078 - 55735034
Alignment:
Q  16 caaattgaagggcctcgagtaaggctactgcctccccctccaata 60  Q
    |||| ||||||||||||||||||||||||||||||||||||||||    
T  55735078 caaagtgaagggcctcgagtaaggctactgcctccccctccaata 55735034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 29655769 - 29655826
Alignment:
Q  1 atctgttcacatcagcaaattgaagggcctcgagtaaggctactgcctccccctccaa 58  Q
    ||||||||||||||||||| |||| | | |||||||||||||||||||| ||||||||    
T  29655769 atctgttcacatcagcaaagtgaatgacatcgagtaaggctactgcctctccctccaa 29655826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 37245955 - 37246012
Alignment:
Q  1 atctgttcacatcagcaaattgaagggcctcgagtaaggctactgcctccccctccaa 58  Q
    |||||||||||| |||||| ||||  || |||||||||||||||||||||||||||||    
T  37245955 atctgttcacataagcaaagtgaatagcatcgagtaaggctactgcctccccctccaa 37246012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 21321611 - 21321554
Alignment:
Q  1 atctgttcacatcagcaaattgaagggcctcgagtaaggctactgcctccccctccaa 58  Q
    |||||||  |||||| ||| |||||||||||||||||||||| || ||||||||||||    
T  21321611 atctgttagcatcagaaaagtgaagggcctcgagtaaggctattgtctccccctccaa 21321554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 28426267 - 28426210
Alignment:
Q  1 atctgttcacatcagcaaattgaagggcctcgagtaaggctactgcctccccctccaa 58  Q
    ||||||| ||||||||||| ||||  ||  ||||||||||||||||||||||||||||    
T  28426267 atctgtttacatcagcaaagtgaatagcagcgagtaaggctactgcctccccctccaa 28426210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 41835414 - 41835471
Alignment:
Q  1 atctgttcacatcagcaaattgaagggcctcgagtaaggctactgcctccccctccaa 58  Q
    |||||||  |||| ||||| ||||||| |||||||||||||||||| |||||||||||    
T  41835414 atctgtttgcatccgcaaaatgaagggtctcgagtaaggctactgcatccccctccaa 41835471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 49119503 - 49119560
Alignment:
Q  1 atctgttcacatcagcaaattgaagggcctcgagtaaggctactgcctccccctccaa 58  Q
    ||||||| ||||||||||| ||||  ||  ||||||||||||||||||||||||||||    
T  49119503 atctgtttacatcagcaaagtgaatagcagcgagtaaggctactgcctccccctccaa 49119560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 203
Target Start/End: Original strand, 55050495 - 55050538
Alignment:
Q  160 taattacccaaaaatcaccaactccttcaacaaactcttaaaat 203  Q
    |||||||||||||||| |||||||||| ||||||||| ||||||    
T  55050495 taattacccaaaaatctccaactcctttaacaaactcataaaat 55050538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 159 - 244
Target Start/End: Complemental strand, 37531653 - 37531568
Alignment:
Q  159 ataattacccaaaaatcaccaactccttcaacaaactct-taaaattatccacaactcactctcttctatatactatcacagataaa 244  Q
    |||||||||||  |||| ||||| ||||||||||| ||| |||||||| || ||| ||||||| |||| |||||| |||||||||||    
T  37531653 ataattacccagtaatctccaacaccttcaacaaa-tctataaaattaccctcaattcactcttttctctatactctcacagataaa 37531568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 26289624 - 26289575
Alignment:
Q  154 gtaatataattacccaaaaatcaccaactccttcaacaaactcttaaaat 203  Q
    |||| ||||||||||||||||| | |||||||| ||||||||| ||||||    
T  26289624 gtaaaataattacccaaaaatctcaaactcctttaacaaactcataaaat 26289575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 26422705 - 26422762
Alignment:
Q  1 atctgttcacatcagcaaattgaagggcctcgagtaaggctactgcctccccctccaa 58  Q
    ||||||| ||||||||||| | ||  || |||||||||||||||||||||| ||||||    
T  26422705 atctgtttacatcagcaaagtaaatagcatcgagtaaggctactgcctccctctccaa 26422762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 47226433 - 47226490
Alignment:
Q  1 atctgttcacatcagcaaattgaagggcctcgagtaaggctactgcctccccctccaa 58  Q
    |||||||| |||||||||| ||||  |||||||||||| ||| | |||||||||||||    
T  47226433 atctgttcgcatcagcaaagtgaaaagcctcgagtaagactattacctccccctccaa 47226490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 56065701 - 56065656
Alignment:
Q  13 cagcaaattgaagggcctcgagtaaggctactgcctccccctccaa 58  Q
    ||||||| |||| ||| ||||||||||| |||||||||||||||||    
T  56065701 cagcaaagtgaatggcatcgagtaaggcaactgcctccccctccaa 56065656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 25730892 - 25730835
Alignment:
Q  1 atctgttcacatcagcaaattgaagggcctcgagtaaggctactgcctccccctccaa 58  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  25730892 atctgttcgcatcagcaaagtgaagggcctcgagtaaggctactgcctccccctccaa 25730835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 4268174 - 4268126
Alignment:
Q  10 catcagcaaattgaagggcctcgagtaaggctactgcctccccctccaa 58  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  4268174 catcagcaaagtgaagggcctctagtaaggctactgcctccccctccaa 4268126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 20205039 - 20204980
Alignment:
Q  1 atctgttcacatcagcaaattgaagggcctcgagtaaggctactgcctccccctccaata 60  Q
    |||||||| || || |||| |||| |||||||||||||||||||||||||||||||||||    
T  20205039 atctgttcgcaacaacaaagtgaatggcctcgagtaaggctactgcctccccctccaata 20204980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 15988855 - 15988909
Alignment:
Q  4 tgttcacatcagcaaattgaagggcctcgagtaaggctactgcctccccctccaa 58  Q
    ||||| |||||||||| | ||||||||||||||||| ||||||||||||||||||    
T  15988855 tgttcgcatcagcaaagtaaagggcctcgagtaaggttactgcctccccctccaa 15988909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 11375625 - 11375673
Alignment:
Q  10 catcagcaaattgaagggcctcgagtaaggctactgcctccccctccaa 58  Q
    |||| ||||| ||||||||||||||||||||||||| ||||||||||||    
T  11375625 catccgcaaaatgaagggcctcgagtaaggctactgtctccccctccaa 11375673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 7332566 - 7332517
Alignment:
Q  154 gtaatataattacccaaaaatcaccaactccttcaacaaactcttaaaat 203  Q
    |||| ||||||||||||||||| |||||||||| ||||||||| ||||||    
T  7332566 gtaaaataattacccaaaaatctccaactcctttaacaaactcataaaat 7332517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 22767360 - 22767417
Alignment:
Q  1 atctgttcacatcagcaaattgaagggcctcgagtaaggctactgcctccccctccaa 58  Q
    ||||||| ||||||||||| ||||  ||  ||||||||||||||||||||||||||||    
T  22767360 atctgtttacatcagcaaagtgaatagcagcgagtaaggctactgcctccccctccaa 22767417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 203
Target Start/End: Original strand, 4062609 - 4062652
Alignment:
Q  160 taattacccaaaaatcaccaactccttcaacaaactcttaaaat 203  Q
    |||||||||||||||| |||||||||| ||||||||| ||||||    
T  4062609 taattacccaaaaatctccaactcctttaacaaactcataaaat 4062652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 37448209 - 37448158
Alignment:
Q  1 atctgttcacatcagcaaattgaagggcctcgagtaaggctactgcctcccc 52  Q
    ||||||||||||||||||| |||| | | |||||||||||||| ||||||||    
T  37448209 atctgttcacatcagcaaagtgaatgacatcgagtaaggctaccgcctcccc 37448158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 8388170 - 8388113
Alignment:
Q  1 atctgttcacatcagcaaattgaagggcctcgagtaaggctactgcctccccctccaa 58  Q
    |||||||| || | ||||| |||| ||| ||||||||||| |||||||||||||||||    
T  8388170 atctgttcccaaccgcaaagtgaatggcatcgagtaaggcaactgcctccccctccaa 8388113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 27292518 - 27292465
Alignment:
Q  1 atctgttcacatcagcaaattgaagggcctcgagtaaggctactgcctccccct 54  Q
    |||||||  |||||||||| |||||||| || |||||||||| |||||||||||    
T  27292518 atctgttatcatcagcaaagtgaagggcatctagtaaggctattgcctccccct 27292465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 29865500 - 29865451
Alignment:
Q  154 gtaatataattacccaaaaatcaccaactccttcaacaaactcttaaaat 203  Q
    |||| ||||||||||||||||| | |||||||| ||||||||| ||||||    
T  29865500 gtaaaataattacccaaaaatctcaaactcctttaacaaactcataaaat 29865451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 153 - 217
Target Start/End: Complemental strand, 23570987 - 23570923
Alignment:
Q  153 ggtaatataattacccaaaaatcaccaactccttcaacaaactcttaaaattatccacaactcac 217  Q
    ||||| || |||| |||||||||  ||||||||||||||||||| || | ||||| |||||||||    
T  23570987 ggtaaaatgattatccaaaaatcttcaactccttcaacaaactcatagatttatcaacaactcac 23570923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 16732017 - 16731958
Alignment:
Q  1 atctgttcacatcagcaaattgaagggcctcgagtaaggctactgcctccccctccaata 60  Q
    |||||||| |||||||| | |||| |||||||||||||||||||||||||||||||||||    
T  16732017 atctgttcgcatcagcagagtgaatggcctcgagtaaggctactgcctccccctccaata 16731958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 17710151 - 17710092
Alignment:
Q  1 atctgttcacatcagcaaattgaagggcctcgagtaaggctactgcctccccctccaata 60  Q
    |||||||| |||||||| | |||| |||||||||||||||||||||||||||||||||||    
T  17710151 atctgttcgcatcagcagagtgaatggcctcgagtaaggctactgcctccccctccaata 17710092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 1581700 - 1581648
Alignment:
Q  1 atctgttcacatcagcaaattgaagggcctcgagtaaggctactgcctccccc 53  Q
    |||||||| |||||||||| |||||||||||||||||||||||||| ||||||    
T  1581700 atctgttcgcatcagcaaagtgaagggcctcgagtaaggctactgcatccccc 1581648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 16098565 - 16098517
Alignment:
Q  10 catcagcaaattgaagggcctcgagtaaggctactgcctccccctccaa 58  Q
    |||||||||||||||||||||| |||||||||||| |||| ||||||||    
T  16098565 catcagcaaattgaagggcctctagtaaggctactacctctccctccaa 16098517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 30824578 - 30824628
Alignment:
Q  1 atctgttcacatcagcaaattgaagggcctcgagtaaggctactgcctccc 51  Q
    |||||||| ||| || ||| |||||||||||||||||||||||||||||||    
T  30824578 atctgttcgcattagaaaagtgaagggcctcgagtaaggctactgcctccc 30824628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 9328705 - 9328762
Alignment:
Q  1 atctgttcacatcagcaaattgaagggcctcgagtaaggctactgcctccccctccaa 58  Q
    ||||||| ||||||||||| ||||  ||  ||||||||||||||||||||||||||||    
T  9328705 atctgtttacatcagcaaagtgaatagcagcgagtaaggctactgcctccccctccaa 9328762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 17877472 - 17877433
Alignment:
Q  21 tgaagggcctcgagtaaggctactgcctccccctccaata 60  Q
    |||||||||| ||||||||||||| |||||||||||||||    
T  17877472 tgaagggccttgagtaaggctacttcctccccctccaata 17877433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 3601725 - 3601688
Alignment:
Q  21 tgaagggcctcgagtaaggctactgcctccccctccaa 58  Q
    |||||||||||||||||||||||  |||||||||||||    
T  3601725 tgaagggcctcgagtaaggctaccacctccccctccaa 3601688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 29913035 - 29913084
Alignment:
Q  154 gtaatataattacccaaaaatcaccaactccttcaacaaactcttaaaat 203  Q
    |||| ||||||||||||| ||| |||||||||| ||||||||| ||||||    
T  29913035 gtaaaataattacccaaatatctccaactcctttaacaaactcataaaat 29913084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 14680246 - 14680187
Alignment:
Q  1 atctgttcacatcagcaaattgaagggcctcgagtaaggctactgcctccccctccaata 60  Q
    |||||||  |||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  14680246 atctgtttgcatcagcagagtgaagggcctcgagtaaggctactgcctccccctccaata 14680187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 29368168 - 29368216
Alignment:
Q  10 catcagcaaattgaagggcctcgagtaaggctactgcctccccctccaa 58  Q
    |||||||||| ||||||||||||||||||| || |||||||||||||||    
T  29368168 catcagcaaagtgaagggcctcgagtaaggatattgcctccccctccaa 29368216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 15606100 - 15606154
Alignment:
Q  4 tgttcacatcagcaaattgaagggcctcgagtaaggctactgcctccccctccaa 58  Q
    ||||| ||||| |||| |||| ||| |||||||||||||||||||||||||||||    
T  15606100 tgttcccatcaacaaagtgaatggcatcgagtaaggctactgcctccccctccaa 15606154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 20872927 - 20872976
Alignment:
Q  154 gtaatataattacccaaaaatcaccaactccttcaacaaactcttaaaat 203  Q
    |||| ||||||||||||||||| |||||||||| ||||||||| ||||||    
T  20872927 gtaaaataattacccaaaaatctccaactcctttaacaaactcataaaat 20872976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 220
Target Start/End: Original strand, 10190094 - 10190155
Alignment:
Q  159 ataattacccaaaaatcaccaactccttcaacaaactcttaaaattatccacaactcactct 220  Q
    |||| ||||| |||||| |||||||||||||||||    |||||||||| ||||||||||||    
T  10190094 ataactaccccaaaatctccaactccttcaacaaaactgtaaaattatcaacaactcactct 10190155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 19690982 - 19691039
Alignment:
Q  1 atctgttcacatcagcaaattgaagggcctcgagtaaggctactgcctccccctccaa 58  Q
    ||||||||||||||||||| |||| | | |||| |||||||| ||||||||| |||||    
T  19690982 atctgttcacatcagcaaagtgaatgacatcgaataaggctattgcctccccttccaa 19691039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 394
Target Start/End: Original strand, 20875134 - 20875187
Alignment:
Q  341 aaaaacctccttgaatgaaaccaccgcgaacccaccttttttagcgtggtgtgc 394  Q
    ||||||||||||| ||||||||||| | || |||||||||||||| || |||||    
T  20875134 aaaaacctccttgtatgaaaccaccacaaatccaccttttttagcatgttgtgc 20875187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 23409715 - 23409666
Alignment:
Q  154 gtaatataattacccaaaaatcaccaactccttcaacaaactcttaaaat 203  Q
    |||| ||||||||||||||||| | |||||||| ||||||||| ||||||    
T  23409715 gtaaaataattacccaaaaatctcaaactcctttaacaaactcataaaat 23409666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 58
Target Start/End: Original strand, 15053307 - 15053335
Alignment:
Q  30 tcgagtaaggctactgcctccccctccaa 58  Q
    |||||||||||||||||||||||||||||    
T  15053307 tcgagtaaggctactgcctccccctccaa 15053335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 18345590 - 18345644
Alignment:
Q  1 atctgttcacatcagcaaattgaagggcctcgagtaaggctactgcctccccctc 55  Q
    |||||||  |||||||||| |||||||||||||||||||||||||||||||||||    
T  18345590 atctgttagcatcagcaaagtgaagggcctcgagtaaggctactgcctccccctc 18345644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 88643 - 88586
Alignment:
Q  1 atctgttcacatcagcaaattgaagggcctcgagtaaggctactgcctccccctccaa 58  Q
    |||||||  ||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  88643 atctgttagcatcaacaaagtgaagggcctcgagtaaggctactgcctccccctccaa 88586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 34696015 - 34696064
Alignment:
Q  9 acatcagcaaattgaagggcctcgagtaaggctactgcctccccctccaa 58  Q
    ||||||||||| |||| ||||| |||||||||||||||||||||||||||    
T  34696015 acatcagcaaagtgaatggccttgagtaaggctactgcctccccctccaa 34696064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 34718427 - 34718476
Alignment:
Q  9 acatcagcaaattgaagggcctcgagtaaggctactgcctccccctccaa 58  Q
    ||||||||||| |||| ||||| |||||||||||||||||||||||||||    
T  34718427 acatcagcaaagtgaatggccttgagtaaggctactgcctccccctccaa 34718476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 12130750 - 12130798
Alignment:
Q  10 catcagcaaattgaagggcctcgagtaaggctactgcctccccctccaa 58  Q
    |||||||||| ||||| ||||| ||||||||||||||||||||||||||    
T  12130750 catcagcaaagtgaagagcctcaagtaaggctactgcctccccctccaa 12130798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 9710013 - 9709956
Alignment:
Q  1 atctgttcacatcagcaaattgaagggcctcgagtaaggctactgcctccccctccaa 58  Q
    |||||||| || | ||||| |||| ||| ||||||||||| |||||||||||||||||    
T  9710013 atctgttcccaaccgcaaagtgaatggcatcgagtaaggcaactgcctccccctccaa 9709956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 133
Target Start/End: Original strand, 14909792 - 14909857
Alignment:
Q  68 tatgtgttatattaaattgacgaattacatgcttatttgacatttaaaaatgaagtggtgtatttt 133  Q
    |||||||||| || | |||| ||| |||||| ||||| ||||||||||||||| ||||| ||||||    
T  14909792 tatgtgttatgttgagttgatgaaatacatgattattagacatttaaaaatgatgtggtatatttt 14909857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 220
Target Start/End: Complemental strand, 17682024 - 17681963
Alignment:
Q  159 ataattacccaaaaatcaccaactccttcaacaaactcttaaaattatccacaactcactct 220  Q
    |||| ||||| |||||| |||||||||||||||||    |||||||||| ||||||||||||    
T  17682024 ataactaccccaaaatctccaactccttcaacaaaactgtaaaattatcaacaactcactct 17681963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 44527337 - 44527280
Alignment:
Q  1 atctgttcacatcagcaaattgaagggcctcgagtaaggctactgcctccccctccaa 58  Q
    |||||||  |||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  44527337 atctgttagcatcagcaaagtgaagggcctctagtaaggctactgcctccccctccaa 44527280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 16816903 - 16816954
Alignment:
Q  1 atctgttcacatcagcaaattgaagggcctcgagtaaggctactgcctcccc 52  Q
    |||||||  |||||||||| ||||||||||||||||||||||||||||||||    
T  16816903 atctgtttgcatcagcaaaatgaagggcctcgagtaaggctactgcctcccc 16816954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 25682735 - 25682678
Alignment:
Q  1 atctgttcacatcagcaaattgaagggcctcgagtaaggctactgcctccccctccaa 58  Q
    |||||||||||| |||||| |||| | | |||||||||||||||||||||||||||||    
T  25682735 atctgttcacattagcaaagtgaatgacatcgagtaaggctactgcctccccctccaa 25682678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 52109538 - 52109481
Alignment:
Q  1 atctgttcacatcagcaaattgaagggcctcgagtaaggctactgcctccccctccaa 58  Q
    |||||||  |||||||||| |||||| ||||||||||||||||||| |||||||||||    
T  52109538 atctgttagcatcagcaaagtgaaggacctcgagtaaggctactgcatccccctccaa 52109481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 4395242 - 4395191
Alignment:
Q  1 atctgttcacatcagcaaattgaagggcctcgagtaaggctactgcctcccc 52  Q
    |||| ||| |||||||||| |||||||||||||||||||||| |||||||||    
T  4395242 atctattcgcatcagcaaagtgaagggcctcgagtaaggctagtgcctcccc 4395191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 5609423 - 5609370
Alignment:
Q  1 atctgttcacatcagcaaattgaagggcctcgagtaaggctactgcctccccct 54  Q
    |||||||| || || |||| |||||| |||||||||||||||||||||||||||    
T  5609423 atctgttcgcaacatcaaagtgaaggacctcgagtaaggctactgcctccccct 5609370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 217
Target Start/End: Complemental strand, 7843922 - 7843858
Alignment:
Q  153 ggtaatataattacccaaaaatcaccaactccttcaacaaactcttaaaattatccacaactcac 217  Q
    ||||| ||||||| ||||||||| |||||| ||||||||||||| || | ||||| |||||||||    
T  7843922 ggtaaaataattatccaaaaatctccaacttcttcaacaaactcgtagatttatcaacaactcac 7843858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 159 - 244
Target Start/End: Original strand, 28962045 - 28962130
Alignment:
Q  159 ataattacccaaaaatcaccaactccttcaacaaactct-taaaattatccacaactcactctcttctatatactatcacagataaa 244  Q
    |||||||||||  |||| ||||| ||||||||||| ||| |||||||| || ||| ||||||| |||| |||||| |||||||||||    
T  28962045 ataattacccagtaatctccaacaccttcaacaaa-tctataaaattaccctcaattcactcttttctctatactctcacagataaa 28962130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 17006120 - 17006071
Alignment:
Q  154 gtaatataattacccaaaaatcaccaactccttcaacaaactcttaaaat 203  Q
    |||| ||||||||||||||||| | |||||||| ||||||||| ||||||    
T  17006120 gtaaaataattacccaaaaatctctaactcctttaacaaactcataaaat 17006071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 153 - 217
Target Start/End: Complemental strand, 19103121 - 19103057
Alignment:
Q  153 ggtaatataattacccaaaaatcaccaactccttcaacaaactcttaaaattatccacaactcac 217  Q
    ||||| || |||| |||||||||  ||||||||||||||||||| || | ||||| |||||||||    
T  19103121 ggtaaaatgattatccaaaaatcttcaactccttcaacaaactcatagatttatcaacaactcac 19103057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 53497116 - 53497062
Alignment:
Q  1 atctgttcacatcagcaaattgaagggcctcgagtaaggctactgcctccccctc 55  Q
    |||||||  |||||||||| ||||||||||| |||||||||||||||||||||||    
T  53497116 atctgttagcatcagcaaagtgaagggcctctagtaaggctactgcctccccctc 53497062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 647314 - 647370
Alignment:
Q  1 atctgttcacatcagcaaattgaagggcctcgagtaaggctactgcctccccctcca 57  Q
    ||||||||||||||||||| |||| | | |||||||||||| |||||||||||||||    
T  647314 atctgttcacatcagcaaagtgaatgacatcgagtaaggctgctgcctccccctcca 647370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 2615568 - 2615520
Alignment:
Q  10 catcagcaaattgaagggcctcgagtaaggctactgcctccccctccaa 58  Q
    |||||||||| |||| | | |||||||||||||||||||||||||||||    
T  2615568 catcagcaaagtgaacgacatcgagtaaggctactgcctccccctccaa 2615520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 217
Target Start/End: Original strand, 40057302 - 40057366
Alignment:
Q  153 ggtaatataattacccaaaaatcaccaactccttcaacaaactcttaaaattatccacaactcac 217  Q
    ||||| ||||||| ||||||||| |||||| ||||||||||||| || | ||||| |||||||||    
T  40057302 ggtaaaataattatccaaaaatctccaacttcttcaacaaactcgtagatttatcaacaactcac 40057366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 253
Target Start/End: Original strand, 29195386 - 29195481
Alignment:
Q  159 ataattacccaaaaatcaccaactccttcaacaaactcttaaaattatcca-caactcactctcttctatatactatcacagataaaccacacact 253  Q
    |||||||||||  |||  ||||||||||||||||| || ||||| |  ||| ||||||| ||| ||| ||||||| ||||||||||| ||||||||    
T  29195386 ataattacccagtaatttccaactccttcaacaaattcataaaaattaccagcaactcattctgttccatatactctcacagataaagcacacact 29195481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 19817030 - 19816981
Alignment:
Q  154 gtaatataattacccaaaaatcaccaactccttcaacaaactcttaaaat 203  Q
    |||| ||||||||||||||||| | |||||||| ||||||||| ||||||    
T  19817030 gtaaaataattacccaaaaatctcaaactcctttaacaaactcataaaat 19816981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 42340380 - 42340437
Alignment:
Q  1 atctgttcacatcagcaaattgaagggcctcgagtaaggctactgcctccccctccaa 58  Q
    ||||||||||||| ||||| |||| | | ||||||| ||||| |||||||||||||||    
T  42340380 atctgttcacatctgcaaagtgaatgacatcgagtagggctattgcctccccctccaa 42340437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 153 - 217
Target Start/End: Original strand, 20789994 - 20790058
Alignment:
Q  153 ggtaatataattacccaaaaatcaccaactccttcaacaaactcttaaaattatccacaactcac 217  Q
    ||||| || |||| |||||||||  |||||||||||||||||||  ||| ||||| |||||||||    
T  20789994 ggtaaaatgattatccaaaaatcttcaactccttcaacaaactcacaaatttatcaacaactcac 20790058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 365
Target Start/End: Complemental strand, 30170118 - 30170078
Alignment:
Q  325 catgaaagaaagggacaaaaacctccttgaatgaaaccacc 365  Q
    ||||||||||||||| ||||| ||||||| |||||||||||    
T  30170118 catgaaagaaagggaaaaaaaactccttgtatgaaaccacc 30170078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 478159 - 478216
Alignment:
Q  1 atctgttcacatcagcaaattgaagggcctcgagtaaggctactgcctccccctccaa 58  Q
    |||| ||||||| |||||| |||| ||| |||||||||||||||||||||||||||||    
T  478159 atctattcacattagcaaagtgaatggcatcgagtaaggctactgcctccccctccaa 478216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 7127307 - 7127250
Alignment:
Q  1 atctgttcacatcagcaaattgaagggcctcgagtaaggctactgcctccccctccaa 58  Q
    ||||||||||||||||||| ||||  || ||||||||||||||| |||||||||||||    
T  7127307 atctgttcacatcagcaaagtgaatagcatcgagtaaggctactacctccccctccaa 7127250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 13415107 - 13415050
Alignment:
Q  1 atctgttcacatcagcaaattgaagggcctcgagtaaggctactgcctccccctccaa 58  Q
    |||||||  |||| |||||  |||||||||||||||||||||||||||||||||||||    
T  13415107 atctgtttgcatccgcaaaaggaagggcctcgagtaaggctactgcctccccctccaa 13415050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 37250794 - 37250745
Alignment:
Q  154 gtaatataattacccaaaaatcaccaactccttcaacaaactcttaaaat 203  Q
    |||| ||||||||||||||||| |||||||||| ||||||||| ||||||    
T  37250794 gtaaaataattacccaaaaatctccaactcctttaacaaactcataaaat 37250745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 40588833 - 40588890
Alignment:
Q  1 atctgttcacatcagcaaattgaagggcctcgagtaaggctactgcctccccctccaa 58  Q
    |||||||  |||| |||||  ||||||||||||||| |||||||||||||||||||||    
T  40588833 atctgtttgcatccgcaaaacgaagggcctcgagtacggctactgcctccccctccaa 40588890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 10279439 - 10279495
Alignment:
Q  162 attacccaaaaatcaccaactccttcaacaaactcttaaaattatccacaactcact 218  Q
    |||||||||||||| |||||||||||||||||||| || || ||||  |||||||||    
T  10279439 attacccaaaaatctccaactccttcaacaaactcatataaatatcttcaactcact 10279495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 16307396 - 16307352
Alignment:
Q  159 ataattacccaaaaatcaccaactccttcaacaaactcttaaaat 203  Q
    ||||||||||||||||| |||||||||| ||||||||| ||||||    
T  16307396 ataattacccaaaaatctccaactcctttaacaaactcataaaat 16307352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 207
Target Start/End: Original strand, 759896 - 759943
Alignment:
Q  160 taattacccaaaaatcaccaactccttcaacaaactcttaaaattatc 207  Q
    |||||| ||||||||| ||||||||||||||||||||  |||||||||    
T  759896 taattatccaaaaatccccaactccttcaacaaactcaaaaaattatc 759943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 8451230 - 8451283
Alignment:
Q  5 gttcacatcagcaaattgaagggcctcgagtaaggctactgcctccccctccaa 58  Q
    |||||||||||| || |||| ||  |||||||| ||||||||||||||||||||    
T  8451230 gttcacatcagcgaagtgaatggaatcgagtaaagctactgcctccccctccaa 8451283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 205
Target Start/End: Complemental strand, 10901062 - 10901017
Alignment:
Q  160 taattacccaaaaatcaccaactccttcaacaaactcttaaaatta 205  Q
    ||||||||||| |||  |||||||||||||||||||| ||||||||    
T  10901062 taattacccaataatttccaactccttcaacaaactcataaaatta 10901017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 16249665 - 16249616
Alignment:
Q  154 gtaatataattacccaaaaatcaccaactccttcaacaaactcttaaaat 203  Q
    |||| ||||||||||||||||| | |||||||| ||||||||| ||||||    
T  16249665 gtaaaataattacccaaaaatctcaaactcctttaacaaactcataaaat 16249616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 16312875 - 16312826
Alignment:
Q  154 gtaatataattacccaaaaatcaccaactccttcaacaaactcttaaaat 203  Q
    |||| ||||||||||||||||| | |||||||| ||||||||| ||||||    
T  16312875 gtaaaataattacccaaaaatctcaaactcctttaacaaactcataaaat 16312826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 23854016 - 23853959
Alignment:
Q  1 atctgttcacatcagcaaattgaagggcctcgagtaaggctactgcctccccctccaa 58  Q
    |||||||  ||||| |||| |||| |||||| ||||||||||||||||| ||||||||    
T  23854016 atctgttagcatcaacaaagtgaatggcctcaagtaaggctactgcctcaccctccaa 23853959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 153 - 217
Target Start/End: Original strand, 40886538 - 40886602
Alignment:
Q  153 ggtaatataattacccaaaaatcaccaactccttcaacaaactcttaaaattatccacaactcac 217  Q
    ||||| ||||||| ||||||||| ||| || ||||||||||||| || | ||||| |||||||||    
T  40886538 ggtaaaataattatccaaaaatctccatcttcttcaacaaactcgtagatttatcaacaactcac 40886602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 41038 - 41087
Alignment:
Q  154 gtaatataattacccaaaaatcaccaactccttcaacaaactcttaaaat 203  Q
    |||| ||||||||||||||||| |||||||||| ||||||||| ||||||    
T  41038 gtaaaataattacccaaaaatctccaactcctttaacaaactcctaaaat 41087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University