View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12735_high_6 (Length: 496)
Name: NF12735_high_6
Description: NF12735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12735_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 446; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 19 - 488
Target Start/End: Original strand, 17820480 - 17820949
Alignment:
| Q |
19 |
aatcctctctttagttgctatcataagctcatcagccctaatttctactcatctcaagaaaccaatctcattttttcacctcaccacagttcagaatgtt |
118 |
Q |
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| T |
17820480 |
aatcctctctttagttgctatcataatctcatcagccctaatttctactcatctcaagaaaccaatctcattttttcacctcaccacagttcagaatgtt |
17820579 |
T |
|
| Q |
119 |
tactgtgaacatgctgttgatacaaaatcttgcttagctcatgtatcggaagtatctcacattccaactttggtcacgacaaaagaccaaaacttgcatg |
218 |
Q |
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| T |
17820580 |
tactgtgaacatgctgttgatacaaaatcttgcttagctcatgtatccgaagtatctcacgttccaactttggtcacgacaaaagaccaaaacttgcatg |
17820679 |
T |
|
| Q |
219 |
tactcttgtccttattaaccaagtccaccacacacattcaaaatgctatggacacagccaatgttatcaaacgccgaattaacagccctagagaagaaat |
318 |
Q |
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| T |
17820680 |
tactcttgtccttattaacaaagtccaccacacacattcaaaatgctatggacacagccagtgttatcaaacgccgaattaacagccctagagaagaaat |
17820779 |
T |
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| Q |
319 |
tgctttgagtgactgtgaacaactaatggacttgtccatgaacagaatttgggacacgatgttaaagctaacaacaaataatattgactcacagcaagat |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
17820780 |
tgctttgagtgactgtgaacaactaatggacttgtccatgaacagaatttgggacacgatgttaaagctaacaaaaaataatattgactcacagcaagat |
17820879 |
T |
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| Q |
419 |
gcacatacatggctaagcagtgtgctcactaaccatgcaacttgcttggatggattagaaggttcatctc |
488 |
Q |
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| T |
17820880 |
gcacatacatggctaagcagtgtgctcactaaccatgcaacttgcttggatggattagaaggttcatctc |
17820949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 23 - 481
Target Start/End: Original strand, 17806712 - 17807167
Alignment:
| Q |
23 |
ctctctttagttgctatcataagctcatcagccctaatttctactcatctcaagaaaccaatctcattttttcacctcaccacagttcagaatgtttact |
122 |
Q |
| |
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|||||||||| |||||||||||||||||||||||| ||| | ||||||| || ||||| ||||| |||| ||| || || ||| || ||||| | |
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| T |
17806712 |
ctctctttagctgctatcataagctcatcagcccttattatttctcatctgaacaaacccatctccattttccacttctcctcagctcctaatgtgt--- |
17806808 |
T |
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| Q |
123 |
gtgaacatgctgttgatacaaaatcttgcttagctcatgtatcggaagtatctcacattccaactttggtcacgacaaaagaccaaaacttgcatgtact |
222 |
Q |
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| T |
17806809 |
gtgaacatgcagttgatacaaactcatgcttaactcatgtagctgaggtagttcaaggttcaaccttggacaacacaaaagaccacaaattgagtacact |
17806908 |
T |
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| Q |
223 |
cttgtccttattaaccaagtccaccacacacattcaaaatgctatggacacagccaatgttatcaaacgccgaattaacagccctagagaagaaattgct |
322 |
Q |
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| | || || |||||||| |||||||||||||||| ||| || |||||||| || |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
17806909 |
catatcgttgttaaccaaatccaccacacacattcgaaaggccatggacacggctaatgttatcaaacgccgaattaacagccctagagaagaaaatgct |
17807008 |
T |
|
| Q |
323 |
ttgagtgactgtgaacaactaatggacttgtccatgaacagaatttgggacacgatgttaaagctaacaacaaataatattgactcacagcaagatgcac |
422 |
Q |
| |
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|||| || ||||||| |||||||| ||||||||||| | ||| |||||||| | |||||| || |||| | ||||||| ||||||||||||||||||| |
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| T |
17807009 |
ttgaatgtctgtgaaaaactaatgaacttgtccatggaaagagtttgggactcagtgttaactctcacaaaagataatatggactcacagcaagatgcac |
17807108 |
T |
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| Q |
423 |
atacatggctaagcagtgtgctcactaaccatgcaacttgcttggatggattagaaggt |
481 |
Q |
| |
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| || |||||||| ||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
17807109 |
acacttggctaagtagtgtgctcacaaaccatgcaacttgtttggatggattagaaggt |
17807167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 21 - 488
Target Start/End: Original strand, 17776018 - 17776482
Alignment:
| Q |
21 |
tcctctctttagttgctatcataagctcatcagccctaatttctactcatctcaagaaaccaatctcattttttcacctcaccacagttcagaatgttta |
120 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||| ||| | ||||||| || ||||| ||||| || || | ||| || ||| || ||| | | |
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| T |
17776018 |
tcctctctttagttgctatcataagttcatcagcccttattatttctcatctaaataaacctatctccttcttcaatctctcctcagctcctaatctat- |
17776116 |
T |
|
| Q |
121 |
ctgtgaacatgctgttgatacaaaatcttgcttagctcatgtatcggaagtatctcacattccaactttggtcacgacaaaagaccaaaacttgcatgta |
220 |
Q |
| |
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|||| |||||| ||||||||||||| |||||| |||||||||| ||||| ||| | | || ||| || || |||||||| || ||| | | |
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| T |
17776117 |
--gtgagcatgctcttgatacaaaatcatgcttaactcatgtatcagaagttgttcaaggttctaccttgtccaataccaaagaccacaaattgagtaca |
17776214 |
T |
|
| Q |
221 |
ctcttgtccttattaaccaagtccaccacacacattcaaaatgctatggacacagccaatgttatcaaacgccgaattaacagccctagagaagaaattg |
320 |
Q |
| |
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||| | || ||||||||||| |||||| ||||||||| ||| || |||||||| || ||||| |||||||||||| |||| ||||||||||| ||||||| |
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| T |
17776215 |
ctcgtatcgttattaaccaaatccaccgcacacattcgaaaggcaatggacacggctaatgtgatcaaacgccgagttaatagccctagagaggaaattg |
17776314 |
T |
|
| Q |
321 |
ctttgagtgactgtgaacaactaatggacttgtccatgaacagaatttgggacacgatgttaaagctaacaacaaataatattgactcacagcaagatgc |
420 |
Q |
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|||||| ||||||||| || ||||||| ||||||||| | ||| |||||||| | |||| | ||||| | |||||| |||||||||||||| ||||| |
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| T |
17776315 |
ctttgaatgactgtgaggaattaatggatttgtccatggatagagtttgggactcagtgttgactctaaccaaaaataacattgactcacagcatgatgc |
17776414 |
T |
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| Q |
421 |
acatacatggctaagcagtgtgctcactaaccatgcaacttgcttggatggattagaaggttcatctc |
488 |
Q |
| |
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||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
17776415 |
acacacatggctaagtagtgtgctcactaaccatgcaacttgtttggatggattagaaggttcatctc |
17776482 |
T |
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