View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12735_high_7 (Length: 494)
Name: NF12735_high_7
Description: NF12735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12735_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 175; Significance: 5e-94; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 300 - 486
Target Start/End: Complemental strand, 2159479 - 2159293
Alignment:
| Q |
300 |
atcattttgatcgtttggagcatgattattgcatcactttatcattgctaattggtaagtgatctctagtgaagatatagtattcaaaaggaattaagaa |
399 |
Q |
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| T |
2159479 |
atcattttgatcgtttggagcatgattattgcatcactttatcattgctaattggtaagtcatctctagtgaagatatagtattcaaaaggaattaagaa |
2159380 |
T |
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| Q |
400 |
accatagcagttatttgggtcatattcctattttacactatgaaatgcatggtgtacaataagcattcataattttgttttcatctc |
486 |
Q |
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| T |
2159379 |
accatagcaattatttgggtcatattcctattttacactatgaaatgcatggtgtacaataagcattcataattttgttttcttctc |
2159293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 189 - 307
Target Start/End: Complemental strand, 2159633 - 2159515
Alignment:
| Q |
189 |
cttgttttaattactcaagtatgcctactttgagttacgataaaccaccctaaaatctaaaaacagcagcatctttggaatcttattcatacttctgaaa |
288 |
Q |
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| T |
2159633 |
cttgttttaattactcaagtatgcctactttgagttacgataaaccaccctaaaatctaaaaacagcagcatctttggaatcttattcatacttctgaaa |
2159534 |
T |
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| Q |
289 |
acaagtgcaatatcatttt |
307 |
Q |
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| T |
2159533 |
acaagtgcaatatcatttt |
2159515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 2159803 - 2159684
Alignment:
| Q |
17 |
tgatttaccttctttcccactattatacttttctttatagcttttacattcttgcagttcaaagagaaaaaagcagaagnnnnnnnnctcataaatacat |
116 |
Q |
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| T |
2159803 |
tgatttaccttctttcccactattatacttttctttatagcttttacattcttgctgttcaaagagaaaaaagcagaagaaaaaaaactcataaatacat |
2159704 |
T |
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| Q |
117 |
ataaatatataggtacattat |
137 |
Q |
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| T |
2159703 |
ataaatatata-gtacattat |
2159684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 306
Target Start/End: Complemental strand, 2162114 - 2162058
Alignment:
| Q |
250 |
aacagcagcatctttggaatcttattcatacttctgaaaacaagtgcaatatcattt |
306 |
Q |
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| T |
2162114 |
aacagcagcatctttgggatcttattcatacttcttctatcaagtgcaatatcattt |
2162058 |
T |
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