View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12735_low_1 (Length: 604)
Name: NF12735_low_1
Description: NF12735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12735_low_1 |
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| [»] scaffold0025 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 464; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 128 - 599
Target Start/End: Complemental strand, 29800161 - 29799690
Alignment:
| Q |
128 |
tagtttcttgccagtaaaacgaaaagacgtatagtgctcatctcaatgatagttttaataataaatttgatatattttagaaatgatgaggtgttttcct |
227 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29800161 |
tagtttcttgccagtaaaacgaaaagatgtatagtgctcatctcaatgatagttttaataataaatttgatatattttagaaatgatgtggtgttttcct |
29800062 |
T |
|
| Q |
228 |
gcattaactaatatatatcttcaatgtgtttgttgtccaaatattcagatgaagtgggtgatgaatgaagctttgaggctctacccaacagcaccaaatg |
327 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29800061 |
gcattaactaatatatatcttcaatgtgtttgttgtccaaatattcagatgaagtgggtgatgaatgaagctttgaggctctacccaacagcaccaaatg |
29799962 |
T |
|
| Q |
328 |
ttcaaaggcaatctagagaagacattaaacttgataatctaacaattcctaatgggaccaatatgtggatcgacgttgttgcaatgcaccatgactcatc |
427 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29799961 |
ttcaaaggcaatctagagaagacattaaacttgataatctaacaattcctaatgggaccaatatgtggatcgacgttgttgcaatgcaccatgactcatc |
29799862 |
T |
|
| Q |
428 |
attgtggggagaaaatgtaaatgagtttcgaccagaaagattcatggatgatgtaaatggtggatgcaaccaaaaaatgggatacttaccttttggattt |
527 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29799861 |
attgtggggagaaaatgtaaatgagtttcgaccagaaagattcatggatgatgtaaatggtggatgcaaccaaaaaatgggatacttaccttttggattt |
29799762 |
T |
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| Q |
528 |
ggaggaagaatgtgtgttggtagaaacttgagctttatggagtataagatagtgttaacccttcttctctct |
599 |
Q |
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| T |
29799761 |
ggaggaagaatgtgtgttggtagaaacttgagctttatggagtataagatagtgttaacccttcttctctct |
29799690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 267 - 599
Target Start/End: Complemental strand, 45420267 - 45419935
Alignment:
| Q |
267 |
aatattcagatgaagtgggtgatgaatgaagctttgaggctctacccaacagcaccaaatgttcaaaggcaatctagagaagacattaaacttgataatc |
366 |
Q |
| |
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||||| |||||||| |||||||||||||||| | | || || |||||| ||||||||||||| ||||| ||| | |||||||||||| || ||||| || |
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| T |
45420267 |
aatatgcagatgaaatgggtgatgaatgaagttctaagactatacccaccagcaccaaatgtgcaaagacaagcaagagaagacattcaagttgatgatg |
45420168 |
T |
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| Q |
367 |
taacaattcctaatgggaccaatatgtggatcgacgttgttgcaatgcaccatgactcatcattgtggggagaaaatgtaaatgagtttcgaccagaaag |
466 |
Q |
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| T |
45420167 |
taacagtgcctaatggaaccaacatgtggattgatgtagtagcgatgcaccatgacccagaattatggggagatgatgtgaatgatttcaaaccagagag |
45420068 |
T |
|
| Q |
467 |
attcatggatgatgtaaatggtggatgcaaccaaaaaatgggatacttaccttttggatttggaggaagaatgtgtgttggtagaaacttgagctttatg |
566 |
Q |
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|||||||||||||| |||||||||||||| || || ||||| || |||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
45420067 |
gttcatggatgatgttaatggtggatgcaaacacaagatggggtatttaccttttggatttggagggagaatgtgtgttggtagaaacttgacatttatg |
45419968 |
T |
|
| Q |
567 |
gagtataagatagtgttaacccttcttctctct |
599 |
Q |
| |
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||||| |||||||||||||| | ||||||||| |
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| T |
45419967 |
gagtacaagatagtgttaacaatacttctctct |
45419935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 273 - 599
Target Start/End: Complemental strand, 45410952 - 45410626
Alignment:
| Q |
273 |
cagatgaagtgggtgatgaatgaagctttgaggctctacccaacagcaccaaatgttcaaaggcaatctagagaagacattaaacttgataatctaacaa |
372 |
Q |
| |
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|||||||| || ||||||||||||| | | || || |||||| ||||||||||||| ||||| ||| | |||||||| ||| || ||||| || ||||| |
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| T |
45410952 |
cagatgaaatgtgtgatgaatgaagttctaagactatacccaccagcaccaaatgtgcaaagacaagcaagagaagatattcaagttgatgatgtaacag |
45410853 |
T |
|
| Q |
373 |
ttcctaatgggaccaatatgtggatcgacgttgttgcaatgcaccatgactcatcattgtggggagaaaatgtaaatgagtttcgaccagaaagattcat |
472 |
Q |
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| T |
45410852 |
tgcctaatggaacaaacatgtggattgatgtagtagcgatgcaccatgacccagaattatggggagatgatgtgaatgagttcaaaccagagaggttcat |
45410753 |
T |
|
| Q |
473 |
ggatgatgtaaatggtggatgcaaccaaaaaatgggatacttaccttttggatttggaggaagaatgtgtgttggtagaaacttgagctttatggagtat |
572 |
Q |
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||||||||| |||||||||||||| || || ||||| || |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
45410752 |
ggatgatgttaatggtggatgcaaacacaagatggggtatttaccttttggatttggagggagaatgtgtgttggtagaaacttgacatttatggagtac |
45410653 |
T |
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| Q |
573 |
aagatagtgttaacccttcttctctct |
599 |
Q |
| |
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|||||||||||||| | ||||||||| |
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| T |
45410652 |
aagatagtgttaacaatacttctctct |
45410626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 29800273 - 29800215
Alignment:
| Q |
17 |
agttgtgacgaggtaaaggctcgttgtcaaaaagcatgtgataaactcctttggtataa |
75 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
29800273 |
agttgtgacgaggtaaaggctcattgtcaaaaagcatgtgataaactcctttggtataa |
29800215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 129; Significance: 2e-66; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 267 - 599
Target Start/End: Complemental strand, 26835458 - 26835126
Alignment:
| Q |
267 |
aatattcagatgaagtgggtgatgaatgaagctttgaggctctacccaacagcaccaaatgttcaaaggcaatctagagaagacattaaacttgataatc |
366 |
Q |
| |
|
||||| |||||||| |||||||||||||||| ||| || || |||||| || |||||||||| ||||| ||| | ||||||||||||||| |||||||| |
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| T |
26835458 |
aatatgcagatgaaatgggtgatgaatgaagttttaagactatacccaccatcaccaaatgtgcaaagacaaacaagagaagacattaaagttgataatg |
26835359 |
T |
|
| Q |
367 |
taacaattcctaatgggaccaatatgtggatcgacgttgttgcaatgcaccatgactcatcattgtggggagaaaatgtaaatgagtttcgaccagaaag |
466 |
Q |
| |
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||||| | |||||||| ||||| |||||||| || || || ||||||||||||||| | ||| |||||||| |||| |||||||| |||||| || |
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| T |
26835358 |
taacagtgcctaatggaaccaacatgtggattgatgtagtagcaatgcaccatgaccctgaattatggggagatgatgtgaatgagttcaaaccagagag |
26835259 |
T |
|
| Q |
467 |
attcatggatgatgtaaatggtggatgcaaccaaaaaatgggatacttaccttttggatttggaggaagaatgtgtgttggtagaaacttgagctttatg |
566 |
Q |
| |
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||| | |||||||| |||||||||||||| || || ||||| || |||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
26835258 |
gttcgtcgatgatgttaatggtggatgcaaacacaagatggggtatttaccttttggatttggagggagaatgtgtgttggtagaaacttgacatttatg |
26835159 |
T |
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| Q |
567 |
gagtataagatagtgttaacccttcttctctct |
599 |
Q |
| |
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||||| |||||||| ||||| | ||||||||| |
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| T |
26835158 |
gagtacaagatagtattaacaatgcttctctct |
26835126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 273 - 595
Target Start/End: Complemental strand, 63779 - 63457
Alignment:
| Q |
273 |
cagatgaagtgggtgatgaatgaagctttgaggctctacccaacagcaccaaatgttcaaaggcaatctagagaagacattaaacttgataatctaacaa |
372 |
Q |
| |
|
|||||||| ||||||| || |||||| | || ||||||||| || | |||||||| ||||||||| ||| || || ||| | | |||||| ||| |
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| T |
63779 |
cagatgaaatgggtgaggagtgaagcacttagactctacccaccatctccaaatgtgcaaaggcaagctaaggaggatattcgagtagataatataaagg |
63680 |
T |
|
| Q |
373 |
ttcctaatgggaccaatatgtggatcgacgttgttgcaatgcaccatgactcatcattgtggggagaaaatgtaaatgagtttcgaccagaaagattcat |
472 |
Q |
| |
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| ||||| |||||||| || ||||| |||||||| ||||||||||||||| |||| ||||| | ||| ||| ||||| |||||| || ||||| |
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| T |
63679 |
tgcctaaagggaccaacatttggattgacgttgtagcaatgcaccatgacatgacattatgggggaatgatgcaaacaagtttaaaccagagaggttcat |
63580 |
T |
|
| Q |
473 |
ggatgatgtaaatggtggatgcaaccaaaaaatgggatacttaccttttggatttggaggaagaatgtgtgttggtagaaacttgagctttatggagtat |
572 |
Q |
| |
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| |||||| ||||| | |||| |||| | |||||| ||||| |||||||| |||||||| ||| ||| ||||||| ||||||| ||| ||||||||| |
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| T |
63579 |
gaatgatgccaatggggaatgccaccacacaatggggtacttgccttttggttttggagggagagcatgtattggtaggaacttgatcttcatggagtat |
63480 |
T |
|
| Q |
573 |
aagatagtgttaacccttcttct |
595 |
Q |
| |
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|| |||||||||||||| ||||| |
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| T |
63479 |
aacatagtgttaaccctacttct |
63457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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