View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12735_low_11 (Length: 369)

Name: NF12735_low_11
Description: NF12735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12735_low_11
NF12735_low_11
[»] chr3 (2 HSPs)
chr3 (18-358)||(20600978-20601326)
chr3 (120-335)||(4680757-4680972)
[»] chr4 (2 HSPs)
chr4 (102-343)||(31232047-31232288)
chr4 (24-74)||(31232324-31232374)
[»] scaffold0102 (2 HSPs)
scaffold0102 (120-335)||(4582-4797)
scaffold0102 (120-335)||(229-444)
[»] chr1 (1 HSPs)
chr1 (120-335)||(23417229-23417444)
[»] chr6 (1 HSPs)
chr6 (117-340)||(27913468-27913691)
[»] chr2 (1 HSPs)
chr2 (178-351)||(37176752-37176925)


Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 358
Target Start/End: Original strand, 20600978 - 20601326
Alignment:
Q  18 ctttaatgtttcagttaaaattaccaaagaagttttggtcttatgctgtgctacatgttgtgtatctcttga--------ccaaccaaattactacaaaa 109  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||    
T  20600978 ctttgatgtttcagtcaaaattaccaaagaagttttggtcttatgctgtgctacatgttgtgtatctcttgaatagaataccaaccaaattactacaaaa 20601077  T
Q  110 taggtcatcttatgaacttttatatggacatactcctgatttgagtcatcttaaagtattttgttgtctgagttatgcctctactttgcctgttaacaga 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||  |||||||||||||| |||    
T  20601078 taggtcatcttatgaacttttatatggacatactcctgatttgagtcatcttaaagtgtttggttgtctgaattatgcctgaactttgcctgttaataga 20601177  T
Q  210 cacaagtttaaccccagaacaaagaagtgtgcttttctgggttacaaatcaggaattaaaggttttattttggttgatgtcaataattctgaaattttag 309  Q
    ||||||||| |||||||| |||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  20601178 cacaagtttgaccccagagcaaaaaagtgtgcttttctaggttacaaatcaggaatgaaaggttttattttggttgatgtccataattctgaaattttag 20601277  T
Q  310 tttctagaaatgtgaagttctttgatttagaatttctttttccttctct 358  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  20601278 tttctagaaatgtgaagttctttgatttagaatttcttttttcttctct 20601326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 335
Target Start/End: Complemental strand, 4680972 - 4680757
Alignment:
Q  120 tatgaacttttatatggacatactcctgatttgagtcatcttaaagtattttgttgtctgagttatgcctctactttgcctgttaacagacacaagttta 219  Q
    |||||| |||| ||||||||| | |||||| | | |||  | ||||| ||| |||||||||||||||| |||||||| |||  |||||||||||| |||     
T  4680972 tatgaagttttgtatggacatgcacctgatctcactcaattgaaagtctttggttgtctgagttatgcttctactttacctactaacagacacaaatttg 4680873  T
Q  220 accccagaacaaagaagtgtgcttttctgggttacaaatcaggaattaaaggttttattttggttgatgtcaataattctgaaattttagtttctagaaa 319  Q
    |||| ||| |||  || ||||| ||| | || |||||  ||| ||| |||||||| ||||| ||||||||  ||    |||| || ||  ||||||| ||    
T  4680872 accctagagcaagaaaatgtgcctttttagggtacaagacagaaatgaaaggtttcattttagttgatgtacattccactgagatattgatttctaggaa 4680773  T
Q  320 tgtgaagttctttgat 335  Q
    ||||||||||||||||    
T  4680772 tgtgaagttctttgat 4680757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 102 - 343
Target Start/End: Complemental strand, 31232288 - 31232047
Alignment:
Q  102 ctacaaaataggtcatcttatgaacttttatatggacatactcctgatttgagtcatcttaaagtattttgttgtctgagttatgcctctactttgcctg 201  Q
    |||||||||||||||||| ||||| ||||||||   || || || ||||||||||| ||||| || ||| ||||  | | |||||| |  ||||| |||     
T  31232288 ctacaaaataggtcatctcatgaagttttatataatcaaacaccagatttgagtcaacttaaggtgtttggttgcttcaattatgctttcactttaccta 31232189  T
Q  202 ttaacagacacaagtttaaccccagaacaaagaagtgtgcttttctgggttacaaatcaggaattaaaggttttattttggttgatgtcaataattctga 301  Q
    |||||||||| |||||| | |||||| |||||||||||| |||||| ||||||||||||||||| || || | ||||||| |||||||  | ||||||||    
T  31232188 ttaacagacataagtttgatcccagagcaaagaagtgtgtttttctaggttacaaatcaggaatgaagggctatattttgtttgatgttcaaaattctga 31232089  T
Q  302 aattttagtttctagaaatgtgaagttctttgatttagaatt 343  Q
    | | || || || | ||||||||||||||||||||| |||||    
T  31232088 agtgtttgtatccaaaaatgtgaagttctttgatttggaatt 31232047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 31232374 - 31232324
Alignment:
Q  24 tgtttcagttaaaattaccaaagaagttttggtcttatgctgtgctacatg 74  Q
    ||||||||| ||||||||| ||||| || ||||||||||||||| ||||||    
T  31232374 tgtttcagtcaaaattacctaagaaattatggtcttatgctgtgttacatg 31232324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 120 - 335
Target Start/End: Original strand, 4582 - 4797
Alignment:
Q  120 tatgaacttttatatggacatactcctgatttgagtcatcttaaagtattttgttgtctgagttatgcctctactttgcctgttaacagacacaagttta 219  Q
    |||||| |||| ||||||||| | |||||| | | |||  | ||||| ||| |||||||||||||||| |||||||| |||  |||||||||||| |||     
T  4582 tatgaagttttgtatggacatgcacctgatctcactcaattgaaagtctttggttgtctgagttatgcttctactttacctactaacagacacaaatttg 4681  T
Q  220 accccagaacaaagaagtgtgcttttctgggttacaaatcaggaattaaaggttttattttggttgatgtcaataattctgaaattttagtttctagaaa 319  Q
    |||| ||| |||  || ||||| ||| | || |||||  ||||||| |||||||| ||||| ||||||||  ||    |||| || ||  ||||||| ||    
T  4682 accctagagcaagaaaatgtgcctttttagggtacaagacaggaatgaaaggtttcattttagttgatgtacattccactgagatattgatttctaggaa 4781  T
Q  320 tgtgaagttctttgat 335  Q
    ||||||||||||||||    
T  4782 tgtgaagttctttgat 4797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 335
Target Start/End: Original strand, 229 - 444
Alignment:
Q  120 tatgaacttttatatggacatactcctgatttgagtcatcttaaagtattttgttgtctgagttatgcctctactttgcctgttaacagacacaagttta 219  Q
    |||||| |||| ||||||||| | |||||| | | |||  | ||||| ||| ||||||| |||||||| |||||||| |||  |||||||||||| |||     
T  229 tatgaagttttgtatggacatgcacctgatctcactcaattgaaagtctttggttgtctaagttatgcttctactttacctactaacagacacaaatttg 328  T
Q  220 accccagaacaaagaagtgtgcttttctgggttacaaatcaggaattaaaggttttattttggttgatgtcaataattctgaaattttagtttctagaaa 319  Q
    |||| ||| |||  || ||||| ||| | || |||||  ||| ||| |||||||| ||||| ||||||||  ||    |||| || ||  ||||||| ||    
T  329 accctagagcaagaaaatgtgcctttatagggtacaagacagaaatgaaaggtttcattttagttgatgtacattccactgagatattgatttctaggaa 428  T
Q  320 tgtgaagttctttgat 335  Q
    ||||||||||||||||    
T  429 tgtgaagttctttgat 444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 120 - 335
Target Start/End: Complemental strand, 23417444 - 23417229
Alignment:
Q  120 tatgaacttttatatggacatactcctgatttgagtcatcttaaagtattttgttgtctgagttatgcctctactttgcctgttaacagacacaagttta 219  Q
    |||||| |||| ||||||||| | |||||| | | |||  | ||||| ||| ||||||| |||||||| |||||||| |||  |||||||||||| |||     
T  23417444 tatgaagttttgtatggacatgcacctgatctcactcaattgaaagtctttggttgtctaagttatgcttctactttacctactaacagacacaaatttg 23417345  T
Q  220 accccagaacaaagaagtgtgcttttctgggttacaaatcaggaattaaaggttttattttggttgatgtcaataattctgaaattttagtttctagaaa 319  Q
    |||| ||| |||  || ||||| ||||| || |||||  ||||||| |||||||| ||||| ||||||||  ||    |||| || ||  ||||||| ||    
T  23417344 accctagagcaagaaaatgtgcctttctagggtacaagacaggaatgaaaggtttcattttagttgatgtacattccactgagatattgatttctaggaa 23417245  T
Q  320 tgtgaagttctttgat 335  Q
    ||||||||||||||||    
T  23417244 tgtgaagttctttgat 23417229  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 117 - 340
Target Start/End: Original strand, 27913468 - 27913691
Alignment:
Q  117 tcttatgaacttttatatggacatactcctgatttgagtcatcttaaagtattttgttgtctgagttatgcctctactttgcctgttaacagacacaagt 216  Q
    ||||||||| |||||||||| ||| |||||||||| |||||  ||| ||| ||| ||||  |||||||||| ||||||||||||   || || |||||||    
T  27913468 tcttatgaagttttatatgggcatgctcctgatttaagtcagtttagagtgtttggttgattgagttatgcttctactttgcctacaaataggcacaagt 27913567  T
Q  217 ttaaccccagaacaaagaagtgtgcttttctgggttacaaatcaggaattaaaggttttattttggttgatgtcaataattctgaaattttagtttctag 316  Q
    || | || ||| | |  |||||||| ||  |||| || ||  ||||||| ||||| |  ||||||||||||||  ||| |||||||||     | |||||    
T  27913568 ttgatcctagagctagaaagtgtgccttcttggggtataaggcaggaatgaaaggctacattttggttgatgttcatagttctgaaataaccatctctag 27913667  T
Q  317 aaatgtgaagttctttgatttaga 340  Q
    |||||| |||||||||||| ||||    
T  27913668 aaatgttaagttctttgatctaga 27913691  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 351
Target Start/End: Original strand, 37176752 - 37176925
Alignment:
Q  178 tgagttatgcctctactttgcctgttaacagacacaagtttaaccccagaacaaagaagtgtgcttttctgggttacaaatcaggaattaaaggttttat 277  Q
    ||||||||||||| || || |||||||||||| |||| ||| |||| | | |||  |||||||||||  | |||| ||| ||||| ||||| || ||| |    
T  37176752 tgagttatgcctcaacattacctgttaacagatacaaatttgaccctaaagcaagaaagtgtgctttcttaggtttcaagtcaggtattaagggatttgt 37176851  T
Q  278 tttggttgatgtcaataattctgaaattttagtttctagaaatgtgaagttctttgatttagaatttctttttc 351  Q
    | | ||||||||  |||   |  | || |||||||||||||||||||| ||||||||| ||||||||| |||||    
T  37176852 tcttgttgatgtgcataccacgaagatattagtttctagaaatgtgaaattctttgatctagaatttccttttc 37176925  T

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