View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12735_low_12 (Length: 350)
Name: NF12735_low_12
Description: NF12735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12735_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 53425543 - 53425204
Alignment:
| Q |
1 |
aataaaagctgccatgaatttgtttttctatttttaggaagataataggagcaaggtattacgctgatcctgatgagtacgatga---aacggagaacac |
97 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
53425543 |
aataaaagctgccatgaatttgtttttctatttttaggaagataataggagcaaggtattacgctgatcctgatgagtacgatgatgaaacggagaacac |
53425444 |
T |
|
| Q |
98 |
ggtaagggatagaaatggacatgggacccacacagcttcaacggctgcagggaactttgtgagtggtgcatcatattatgatctcgcggcagggacagca |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53425443 |
ggtaagggatagaaatggacatgggacccacacagcttcaacggctgcagggaactttgtgagtggtgcatcatattatgatctcgcggcagggacagca |
53425344 |
T |
|
| Q |
198 |
aaaggtgggtctcctgaatcgaggttggcaatttacaaagtgtgctctcctggctgttctggctctggcatgcttgctgcattcgacgatgccatttatg |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53425343 |
aaaggtgggtctcctgaatcgaggttggcaatttacaaagtgtgctctcctggctgttctggctctggcatgcttgctgcattcgacgatgccatttatg |
53425244 |
T |
|
| Q |
298 |
atggagttgatgtactttcactctcaattggtccatattc |
337 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
53425243 |
atggagttgatgtactttcactctcaattggtccatattc |
53425204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 93 - 310
Target Start/End: Complemental strand, 53309438 - 53309221
Alignment:
| Q |
93 |
aacacggtaagggatagaaatggacatgggacccacacagcttcaacggctgcagggaactttgtgagtggtgcatcatattatgatctcgcggcaggga |
192 |
Q |
| |
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|||||||||||||||| | |||||||||| ||||| ||||| || || || |||||||| | ||||||||||||||||| |||| ||| || | ||||| |
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| T |
53309438 |
aacacggtaagggatacatatggacatggtacccatacagcatcgacagcagcagggaatgtcgtgagtggtgcatcatactatggtcttgcagaaggga |
53309339 |
T |
|
| Q |
193 |
cagcaaaaggtgggtctcctgaatcgaggttggcaatttacaaagtgtgctctcctggctgttctggctctggcatgcttgctgcattcgacgatgccat |
292 |
Q |
| |
|
|||||||||||||||| |||| |||||||| || |||||||||||||| | |||| ||||| ||||||||| || ||||| || |||||| ||||||| |
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| T |
53309338 |
cagcaaaaggtgggtcctctgagtcgaggttagcgatttacaaagtgtgatttccttcctgttatggctctgggatccttgcagcgttcgacaatgccat |
53309239 |
T |
|
| Q |
293 |
ttatgatggagttgatgt |
310 |
Q |
| |
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|| |||||||| ||||| |
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| T |
53309238 |
tttcgatggagtagatgt |
53309221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 112 - 322
Target Start/End: Complemental strand, 53432570 - 53432360
Alignment:
| Q |
112 |
atggacatgggacccacacagcttcaacggctgcagggaactttgtgagtggtgcatcatattatgatctcgcggcagggacagcaaaaggtgggtctcc |
211 |
Q |
| |
|
|||| ||||| ||||||||||| || || || || ||||| ||||||||||||||||||| | || ||| ||||||||||| ||||||| ||||| || |
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| T |
53432570 |
atggtcatggaacccacacagcatcgaccgcggctgggaatgttgtgagtggtgcatcatactttggtcttgcggcagggacgacaaaaggcgggtcccc |
53432471 |
T |
|
| Q |
212 |
tgaatcgaggttggcaatttacaaagtgtgctctcctggctgttctggctctggcatgcttgctgcattcgacgatgccatttatgatggagttgatgta |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||| | || || ||||| | ||| ||||| |||||||| ||||| |||| ||||||||||||||| |
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| T |
53432470 |
tgaatcgaggttggcaatttacaaagtgtgcaatatgttttgctcaggctcggccatccttgcggcattcgatgatgcaatttctgatggagttgatgtg |
53432371 |
T |
|
| Q |
312 |
ctttcactctc |
322 |
Q |
| |
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||||||||||| |
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| T |
53432370 |
ctttcactctc |
53432360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 156 - 322
Target Start/End: Original strand, 48372155 - 48372324
Alignment:
| Q |
156 |
gtgagtggtgcatcatattatgatctcgcggcagggacagcaaaaggtgggtctcctgaatcgaggttggcaatttacaaagtgt---gctctcctggct |
252 |
Q |
| |
|
||||||||||||||||| |||| |||||||| ||||| |||||||||||| || ||||||||||||||||| ||||||||||||| || | ||| | |
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| T |
48372155 |
gtgagtggtgcatcatactatggtctcgcggaagggatagcaaaaggtggttcccctgaatcgaggttggcgatttacaaagtgtgcagcaatattggtt |
48372254 |
T |
|
| Q |
253 |
gttctggctctggcatgcttgctgcattcgacgatgccatttatgatggagttgatgtactttcactctc |
322 |
Q |
| |
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| |||||||||| ||| ||||| || || |||||||| |||| ||||||||||||||| ||||| ||||| |
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| T |
48372255 |
gctctggctctgccatacttgcggcgtttgacgatgcaatttctgatggagttgatgtgctttcgctctc |
48372324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 112 - 322
Target Start/End: Complemental strand, 26097946 - 26097736
Alignment:
| Q |
112 |
atggacatgggacccacacagcttcaacggctgcagggaactttgtgagtggtgcatcatattatgatctcgcggcagggacagcaaaaggtgggtctcc |
211 |
Q |
| |
|
|||| ||||| ||||||||||| ||||| || || |||||| | ||||||||||||||||| | || ||| || ||||| || ||||||||||| || || |
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| T |
26097946 |
atgggcatggaacccacacagcgtcaaccgcggcggggaacgtcgtgagtggtgcatcatactttggtcttgcagcaggaacggcaaaaggtggatcccc |
26097847 |
T |
|
| Q |
212 |
tgaatcgaggttggcaatttacaaagtgtgctctcctggctgttctggctctggcatgcttgctgcattcgacgatgccatttatgatggagttgatgta |
311 |
Q |
| |
|
| ||| |||||| ||||||||||||||||| ||| || |||||||||| ||| ||||| || ||||||||||| |||| ||| ||||||||| || |
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| T |
26097846 |
cggatcaaggttgtcaatttacaaagtgtgcaactttggttgctctggctctgccatccttgcggctttcgacgatgcaatttctgacggagttgatata |
26097747 |
T |
|
| Q |
312 |
ctttcactctc |
322 |
Q |
| |
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|||||| |||| |
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| T |
26097746 |
ctttcagtctc |
26097736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 158 - 245
Target Start/End: Complemental strand, 53321155 - 53321068
Alignment:
| Q |
158 |
gagtggtgcatcatattatgatctcgcggcagggacagcaaaaggtgggtctcctgaatcgaggttggcaatttacaaagtgtgctct |
245 |
Q |
| |
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||||||||||||||| || | ||| || ||||||| ||||||| ||||||||| |||| |||||||| |||||||||||||||||| |
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| T |
53321155 |
gagtggtgcatcatactacggtcttgcaaaagggacatcaaaaggggggtctcctcaatcaaggttggcgatttacaaagtgtgctct |
53321068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 26098034 - 26098002
Alignment:
| Q |
30 |
atttttaggaagataataggagcaaggtattac |
62 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
26098034 |
atttttaggaagataataggagcaaggtattac |
26098002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 62
Target Start/End: Original strand, 48372032 - 48372061
Alignment:
| Q |
33 |
tttaggaagataataggagcaaggtattac |
62 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
48372032 |
tttaggaagataataggagcaaggtattac |
48372061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 53309501 - 53309456
Alignment:
| Q |
30 |
atttttaggaagataataggagcaaggtattacgctgatcctgatg |
75 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| || | ||||||| |
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|
| T |
53309501 |
atttttaggaagataatcggagcaaggtattaccctaaccctgatg |
53309456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 53432652 - 53432620
Alignment:
| Q |
30 |
atttttaggaagataataggagcaaggtattac |
62 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |
|
|
| T |
53432652 |
atttttaggaagataataggagcaagatattac |
53432620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 310
Target Start/End: Complemental strand, 140342 - 140302
Alignment:
| Q |
270 |
cttgctgcattcgacgatgccatttatgatggagttgatgt |
310 |
Q |
| |
|
||||||||||| || ||||||||| |||||||||||||||| |
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|
| T |
140342 |
cttgctgcatttgatgatgccattgatgatggagttgatgt |
140302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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