View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12735_low_17 (Length: 269)

Name: NF12735_low_17
Description: NF12735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12735_low_17
NF12735_low_17
[»] chr6 (12 HSPs)
chr6 (57-254)||(28185103-28185302)
chr6 (57-254)||(28180851-28181050)
chr6 (116-254)||(28234357-28234500)
chr6 (104-254)||(28226729-28226886)
chr6 (107-254)||(28325265-28325417)
chr6 (161-247)||(28297971-28298057)
chr6 (161-247)||(28514016-28514102)
chr6 (183-254)||(28242669-28242740)
chr6 (109-254)||(28098620-28098766)
chr6 (183-246)||(26936959-26937022)
chr6 (183-254)||(26342185-26342256)
chr6 (183-253)||(26884028-26884098)
[»] scaffold0038 (4 HSPs)
scaffold0038 (116-254)||(34518-34661)
scaffold0038 (104-254)||(27227-27384)
scaffold0038 (107-254)||(116580-116732)
scaffold0038 (183-254)||(42831-42902)
[»] scaffold0019 (1 HSPs)
scaffold0019 (126-254)||(58533-58666)
[»] chr2 (1 HSPs)
chr2 (185-254)||(3279555-3279624)


Alignment Details
Target: chr6 (Bit Score: 124; Significance: 7e-64; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 57 - 254
Target Start/End: Original strand, 28185103 - 28185302
Alignment:
Q  57 tttcacttcttgatttattttaagaaccctatatatacacccagtttcacattcttacttctcatactcttcttacttcctttttatt-----ttctcat 151  Q
    ||||||||||||||||||||| | |||||||||||||||| ||  | ||||||||||||||||||||| |||||||||||||||||||     |||||||    
T  28185103 tttcacttcttgatttattttga-aaccctatatatacactca--tccacattcttacttctcatactattcttacttcctttttattctctattctcat 28185199  T
Q  152 ggctatgcttcaatcatccgtctcctccccttcttccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggt 251  Q
    |||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||    
T  28185200 ggctatgcttcaatcatccgtctcctcatcctcttccttctcctatggattcacctatgacgtgttccttagctttagaggtagtgacactcgttatcgt 28185299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 57 - 254
Target Start/End: Original strand, 28180851 - 28181050
Alignment:
Q  57 tttcacttcttgatttattttaagaaccctatatatacacccagtttcacattcttacttctcatactcttcttacttcctttttatt-----ttctcat 151  Q
    ||||||||||||||||||||| | |||||||||||||||| ||  | ||||||||||||||||||||| |||||||||||||||||||     |||||||    
T  28180851 tttcacttcttgatttattttga-aaccctatatatacactca--tccacattcttacttctcatactattcttacttcctttttattctctattctcat 28180947  T
Q  152 ggctatgcttcaatcatccgtctcctccccttcttccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggt 251  Q
    |||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||| ||||||    
T  28180948 ggctatgcttcaatcatccgtctcctcatcctcttccttctcctatggattcacctatgacgcgttccttagctttagaggtggtgacactcgttatggt 28181047  T

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Target: chr6; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 116 - 254
Target Start/End: Original strand, 28234357 - 28234500
Alignment:
Q  116 tctcatactcttcttacttcctttttattttct-----catggctatgcttcaatcatccgtctcctccccttcttccttctcctatggattcacctatg 210  Q
    |||||||||||||||||||||||||| || |||     ||||||| ||||||||||||||||| || || ||||||| ||||||||||||||||||||||    
T  28234357 tctcatactcttcttacttcctttttgttctctactctcatggctctgcttcaatcatccgtccccccctcttcttctttctcctatggattcacctatg 28234456  T
Q  211 acgtgttccttagttttagaggtagtgacactcgctatggtttt 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  28234457 acgtgttccttagttttagaggtagtgacactcgctatggtttt 28234500  T

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Target: chr6; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 104 - 254
Target Start/End: Original strand, 28226729 - 28226886
Alignment:
Q  104 cacattcttacttctcatactcttcttacttcctttttatt-----ttctcat--ggctatgcttcaatcatccgtctcctccccttcttccttctccta 196  Q
    |||||||||| ||||||||| ||| ||||||||||| ||||     |||||||  ||||||||||||||||||||||||  |||||||||||||||| ||    
T  28226729 cacattcttaattctcatacacttattacttcctttctattctctattctcatatggctatgcttcaatcatccgtctctcccccttcttccttctctta 28226828  T
Q  197 tggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggtttt 254  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  28226829 tggattcacctatgacgtgttccttagttttagaggtattgacactcgttatggtttt 28226886  T

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Target: chr6; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 107 - 254
Target Start/End: Original strand, 28325265 - 28325417
Alignment:
Q  107 attcttacttctcatactcttcttacttcctttttattt-----tctcatggctatgcttcaatcatccgtctcctccccttcttccttctcctatggat 201  Q
    |||||| |||||||||||||||| | ||||| ||||||      |||||||||| | |||||||||||| |||| ||| | |||||||| ||||||||||    
T  28325265 attcttccttctcatactcttctcatttcctctttattcactactctcatggctctacttcaatcatccatctcttcctcctcttccttttcctatggat 28325364  T
Q  202 tcacctatgacgtgttccttagttttagaggtagtgacactcgctatggtttt 254  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  28325365 tcacctatgacgtgttccttagttttagaggtagtgacactcgttatggtttt 28325417  T

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Target: chr6; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 161 - 247
Target Start/End: Complemental strand, 28298057 - 28297971
Alignment:
Q  161 tcaatcatccgtctcctccccttcttccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgcta 247  Q
    |||||||||| |||| ||| | |||||||||||||||||||||||  ||||||| ||||| |||||||||||||||||||| |||||    
T  28298057 tcaatcatccatctcttcctcctcttccttctcctatggattcactcatgacgttttcctaagttttagaggtagtgacacacgcta 28297971  T

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Target: chr6; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 161 - 247
Target Start/End: Original strand, 28514016 - 28514102
Alignment:
Q  161 tcaatcatccgtctcctccccttcttccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgcta 247  Q
    |||||||||| |||| ||| | |||||||||||||||||||||||  ||||||| ||||| |||||||||||||||||||| |||||    
T  28514016 tcaatcatccatctcttcctcctcttccttctcctatggattcactcatgacgttttcctaagttttagaggtagtgacacacgcta 28514102  T

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Target: chr6; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 183 - 254
Target Start/End: Original strand, 28242669 - 28242740
Alignment:
Q  183 tcttccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggtttt 254  Q
    |||||| |||||||||| || |||||||| || ||||||||||||||||||||||||||||| |||||||||    
T  28242669 tcttccctctcctatgggtttacctatgatgtcttccttagttttagaggtagtgacactcgttatggtttt 28242740  T

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Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 109 - 254
Target Start/End: Complemental strand, 28098766 - 28098620
Alignment:
Q  109 tcttacttctcatactcttcttacttcctttttattt----tctcatggctatgcttcaatcatccgtctcctccccttcttccttctcctatggattca 204  Q
    |||||||||||| ||||||||||||||| |||  |||    ||||||||||||||| ||||||||   ||| | |   ||||| ||||| ||||||||||    
T  28098766 tcttacttctcaaactcttcttacttccatttcttttctcatctcatggctatgctccaatcatcttcctctttc---tcttcattctcttatggattca 28098670  T
Q  205 cctatgacgtgttccttagttttagaggtagtgacactcgctatggtttt 254  Q
    ||||||||||||| |||| |||||| || |  |||||||| |||||||||    
T  28098669 cctatgacgtgtttcttaattttaggggcaccgacactcggtatggtttt 28098620  T

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Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 26936959 - 26937022
Alignment:
Q  183 tcttccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgct 246  Q
    ||||||||||| |||||||||||||||||||||||||| ||||| ||||| |  ||||||||||    
T  26936959 tcttccttctcttatggattcacctatgacgtgttcctcagtttcagaggcaccgacactcgct 26937022  T

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Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 254
Target Start/End: Complemental strand, 26342256 - 26342185
Alignment:
Q  183 tcttccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggtttt 254  Q
    ||||| ||||| ||||||||||| ||||| |||||||| | |||||| || | || ||||||||||||||||    
T  26342256 tcttcattctcatatggattcacatatgatgtgttcctcaattttaggggcattggcactcgctatggtttt 26342185  T

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Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 253
Target Start/End: Original strand, 26884028 - 26884098
Alignment:
Q  183 tcttccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttt 253  Q
    ||||| || |||||||||||||| ||  | |||||||| ||||| ||||| ||||||||||| ||||||||    
T  26884028 tcttcattttcctatggattcacttaccaagtgttcctcagtttcagaggaagtgacactcggtatggttt 26884098  T

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Target: scaffold0038 (Bit Score: 96; Significance: 4e-47; HSPs: 4)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 116 - 254
Target Start/End: Original strand, 34518 - 34661
Alignment:
Q  116 tctcatactcttcttacttcctttttattttct-----catggctatgcttcaatcatccgtctcctccccttcttccttctcctatggattcacctatg 210  Q
    |||||||||||||||||||||||||| || |||     ||||||| ||||||||||||||||| || || ||||||| ||||||||||||||||||||||    
T  34518 tctcatactcttcttacttcctttttgttctctactctcatggctctgcttcaatcatccgtccccccctcttcttctttctcctatggattcacctatg 34617  T
Q  211 acgtgttccttagttttagaggtagtgacactcgctatggtttt 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  34618 acgtgttccttagttttagaggtagtgacactcgctatggtttt 34661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 104 - 254
Target Start/End: Original strand, 27227 - 27384
Alignment:
Q  104 cacattcttacttctcatactcttcttacttcctttttatt-----ttctcat--ggctatgcttcaatcatccgtctcctccccttcttccttctccta 196  Q
    |||||||||| ||||||||| ||| ||||||||||| ||||     |||||||  ||||||||||||||||||||||||  |||||||||||||||| ||    
T  27227 cacattcttaattctcatacacttattacttcctttctattctctattctcatatggctatgcttcaatcatccgtctctcccccttcttccttctctta 27326  T
Q  197 tggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggtttt 254  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  27327 tggattcacctatgacgtgttccttagttttagaggtattgacactcgttatggtttt 27384  T

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Target: scaffold0038; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 107 - 254
Target Start/End: Original strand, 116580 - 116732
Alignment:
Q  107 attcttacttctcatactcttcttacttcctttttattt-----tctcatggctatgcttcaatcatccgtctcctccccttcttccttctcctatggat 201  Q
    |||||| |||||||||||||||| | ||||| ||||||      |||||||||| | |||||||||||| |||| ||| | |||||||| ||||||||||    
T  116580 attcttccttctcatactcttctcatttcctctttattcactactctcatggctctacttcaatcatccatctcttcctcctcttccttttcctatggat 116679  T
Q  202 tcacctatgacgtgttccttagttttagaggtagtgacactcgctatggtttt 254  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  116680 tcacctatgacgtgttccttagttttagaggtagtgacactcgttatggtttt 116732  T

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Target: scaffold0038; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 183 - 254
Target Start/End: Original strand, 42831 - 42902
Alignment:
Q  183 tcttccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggtttt 254  Q
    |||||| |||||||||| || |||||||| || ||||||||||||||||||||||||||||| |||||||||    
T  42831 tcttccctctcctatgggtttacctatgatgtcttccttagttttagaggtagtgacactcgttatggtttt 42902  T

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Target: scaffold0019 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 126 - 254
Target Start/End: Complemental strand, 58666 - 58533
Alignment:
Q  126 ttcttacttcctttttattttc-----tcatggctatgcttcaatcatccgtctcctccccttcttccttctcctatggattcacctatgacgtgttcct 220  Q
    ||||||||||||||||||| ||     ||||||||||||||||||||||| |||| ||| | ||||||||||||||||||||||||||| ||||||||||    
T  58666 ttcttacttcctttttattctctactgtcatggctatgcttcaatcatccatctcttcctcctcttccttctcctatggattcacctatcacgtgttcct 58567  T
Q  221 tagttttagaggtagtgacactcgctatggtttt 254  Q
    ||| ||||||||| ||||||||||||||||||||    
T  58566 tagctttagaggttgtgacactcgctatggtttt 58533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 185 - 254
Target Start/End: Original strand, 3279555 - 3279624
Alignment:
Q  185 ttccttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggtttt 254  Q
    ||||||||| |||||||||||||||||||| ||| | |||||||| || | |||||||||||||||||||    
T  3279555 ttccttctcttatggattcacctatgacgtattcttgagttttaggggcactgacactcgctatggtttt 3279624  T

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