View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12735_low_22 (Length: 231)
Name: NF12735_low_22
Description: NF12735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12735_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 1e-95; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 28494683 - 28494883
Alignment:
| Q |
18 |
tcaagaatccaccaactgccacgtggcttaatatcttcatttgtggggcccattcagtgcataccactccacgcactttggttcgttcttcaaacccttc |
117 |
Q |
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| T |
28494683 |
tcaagaatccaccaactgccacgtggcttaatatcttcatttgtggggcccattcagtgcataccactccacgtactttggttcgttcttcaaacccttc |
28494782 |
T |
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| Q |
118 |
tggcaaatgtaacacaaccttatctgtaggcccacgtcgaaccctaaggacccaaaagaatggaagatttgacttctctaaccctaaagctatctcattc |
217 |
Q |
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| T |
28494783 |
tggcaactgcaacacaaccttatctgtaggcccacgtcgtaccctaaggacccaaaagaatggaaggtttgacttctccaaccctaaagctatctcattc |
28494882 |
T |
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| Q |
218 |
a |
218 |
Q |
| |
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| T |
28494883 |
a |
28494883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 28507229 - 28507429
Alignment:
| Q |
18 |
tcaagaatccaccaactgccacgtggcttaatatcttcatttgtggggcccattcagtgcataccactccacgcactttggttcgttcttcaaacccttc |
117 |
Q |
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||||||||||||||||||||| ||| | ||||||||||||||||||| |||| |||||||||||||||||||| ||||||| || || ||||| ||||| |
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| T |
28507229 |
tcaagaatccaccaactgccatgtgacctaatatcttcatttgtgggacccaatcagtgcataccactccacgtcctttggtccgctcctcaaatccttc |
28507328 |
T |
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| Q |
118 |
tggcaaatgtaacacaaccttatctgtaggcccacgtcgaaccctaaggacccaaaagaatggaagatttgacttctctaaccctaaagctatctcattc |
217 |
Q |
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|||||| || |||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
28507329 |
tggcaattgcaacacaactttatctgtaggcccacgtcgaaccttaaggacccaaaagaatggaaggtttgacttctctaaccctaaagctatctcattc |
28507428 |
T |
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| Q |
218 |
a |
218 |
Q |
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| T |
28507429 |
a |
28507429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 27 - 216
Target Start/End: Original strand, 28491373 - 28491562
Alignment:
| Q |
27 |
caccaactgccacgtggcttaatatcttcatttgtggggcccattcagtgcataccactccacgcactttggttcgttcttcaaacccttctggcaaatg |
126 |
Q |
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|||||| ||||| ||| | ||||||||||||||| || ||||| ||||||||||| ||||| ||| ||||||| || || ||||| ||||| ||||| || |
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| T |
28491373 |
caccaattgccatgtgccctaatatcttcatttgcggagcccaatcagtgcatacaactccgcgccctttggtgcgatcctcaaatccttccggcaattg |
28491472 |
T |
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| Q |
127 |
taacacaaccttatctgtaggcccacgtcgaaccctaaggacccaaaagaatggaagatttgacttctctaaccctaaagctatctcatt |
216 |
Q |
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|||||| |||| ||| || ||||| || || |||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| |
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| T |
28491473 |
taacaccgccttgtctttacgcccatgttgagccctaaggacccaaaagaatggaagattcgacttctccaatcctaaagctatctcatt |
28491562 |
T |
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