View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12735_low_24 (Length: 215)
Name: NF12735_low_24
Description: NF12735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12735_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 17 - 199
Target Start/End: Original strand, 1306894 - 1307076
Alignment:
| Q |
17 |
agaccaaattggcaatggatagcttagcttctgcgttacatgaagtatccgcagaagctagagataccaaagaaaaactattagccaaccaagctgaaca |
116 |
Q |
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| T |
1306894 |
agaccaaattggcaatggatagcttagcttctgcgttacatgaagtatccgcagaagctagagataccaaagaaaaactattagccaaccaagctgaaca |
1306993 |
T |
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| Q |
117 |
cgaaagctatgagactcagattgaagatttaaagtctgatttagaagctagcaaagaaaaatacgagtccatgcttaatgatg |
199 |
Q |
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| T |
1306994 |
cgaaagctatgagactcagattgaagatttaaagtcggatttagaagctagcaaagaaaaatacgagtccatgcttaatgatg |
1307076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 134 - 199
Target Start/End: Original strand, 1307086 - 1307151
Alignment:
| Q |
134 |
agattgaagatttaaagtctgatttagaagctagcaaagaaaaatacgagtccatgcttaatgatg |
199 |
Q |
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| T |
1307086 |
agattgaagatttaaagtcggatttagaagctagcaaagaaaaatacgagtccatgcttaatgatg |
1307151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 192
Target Start/End: Complemental strand, 30013909 - 30013744
Alignment:
| Q |
27 |
ggcaatggatagcttagcttctgcgttacatgaagtatccgcagaagctagagataccaaagaaaaactattagccaaccaagctgaacacgaaagctat |
126 |
Q |
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||||||||| |||||||||||||| |||||||||||||| || ||| ||||||| |||||||||| | || || |||||||||| ||||||||| |
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| T |
30013909 |
ggcaatggaaagcttagcttctgcattacatgaagtatctgctgaatctagagaagccaaagaaaattttctaagcacccaagctgaaagggaaagctat |
30013810 |
T |
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| Q |
127 |
gagactcagattgaagatttaaagtctgatttagaagctagcaaagaaaaatacgagtccatgctt |
192 |
Q |
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| T |
30013809 |
gagaaccagattgaagatttgaagttagtcttaaaaggtaccaatgaaaaatatgagtcaatgctt |
30013744 |
T |
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