View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12735_low_3 (Length: 588)
Name: NF12735_low_3
Description: NF12735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12735_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 69 - 120
Target Start/End: Original strand, 4532197 - 4532248
Alignment:
| Q |
69 |
gaccacaactcattataattcaaatcttcagagacatgatttaattcaaatt |
120 |
Q |
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| T |
4532197 |
gaccacaactcattataattcaaatcttcagagacatgatttaattcaaatt |
4532248 |
T |
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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 166 - 330
Target Start/End: Complemental strand, 4327316 - 4327144
Alignment:
| Q |
166 |
tacatccctatactatgcttaaaattt-ctgcattttgtaacataatcatgtagaaaatgaggactgtaggtctctatttaagcagtctatttatgtgt- |
263 |
Q |
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| T |
4327316 |
tacatacctacaccatgctgaaaattttctgcattttataacataatcatgcagaatatctaaactgcaggtctctatttaagtagtacatttaagtgtt |
4327217 |
T |
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| Q |
264 |
------ctaaatctatgcaaaacacatttctttggaattattaaaagggaaaatatatagaaccattacactt |
330 |
Q |
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| T |
4327216 |
taaattctaaatcaatgcaaaacacgtttctttgaaattattaaaagggaaaacaattagaaccattagactt |
4327144 |
T |
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Target: chr7 (Bit Score: 46; Significance: 6e-17; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 348 - 409
Target Start/End: Original strand, 13763005 - 13763065
Alignment:
| Q |
348 |
attgctttattctcttgcaggtttggagaatcaatatgaaaaagttcttgagaaagcttaca |
409 |
Q |
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| T |
13763005 |
attgctttat-ctcttgcaggtttggacaatcaatatgaaaaagttcatgagaaagcttaca |
13763065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 232 - 310
Target Start/End: Original strand, 13762752 - 13762830
Alignment:
| Q |
232 |
taggtctctatttaagcagtctatttatgtgtctaaatctatgcaaaacacatttctttggaattattaaaagggaaaa |
310 |
Q |
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| T |
13762752 |
taggtctctatttaagtagtacatttaagtgtctaaatcaatgcaaaacatatttctttgaaattaccaaaagggaaaa |
13762830 |
T |
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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 508 - 567
Target Start/End: Complemental strand, 16263024 - 16262965
Alignment:
| Q |
508 |
tctttaatttaaaacattccaggattttgtggcagaccagaacctttgaatctcacagat |
567 |
Q |
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| T |
16263024 |
tctttaatttaacacattcaaagattttgaggcagatcagatcctttgaatctcacagat |
16262965 |
T |
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