View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12735_low_8 (Length: 459)
Name: NF12735_low_8
Description: NF12735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12735_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 196 - 448
Target Start/End: Original strand, 10498643 - 10498901
Alignment:
| Q |
196 |
gtagtaccatgtttcagattcccaacaaccgacccatcatcaccatgtttctgtttctgatcttcatcataaacatcatcatagtaacatc------atc |
289 |
Q |
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| T |
10498643 |
gtagtaccatgtttcagattcccaacaaccgacccattatcaccatgtttctgtttctgatcttcatcataaacatcatcacagtaacatcatcatcatc |
10498742 |
T |
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| Q |
290 |
agatcttcgacctgggttttactcaaaaacatgtccaaaagctgaaaccattgtcagagatgttatgagaaaagctcttataagagaaccaagaagtgtt |
389 |
Q |
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| T |
10498743 |
agatcttcgacctgggttttactcaaaaacatgtccaaaagctgaaaccattgtcagagatgttatgagaaaagctcttataagagaaccaagaagtgtt |
10498842 |
T |
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| Q |
390 |
gcctctgttatgagacttcagtttcatgattgctttgttaatgtatgttcgctctctct |
448 |
Q |
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| T |
10498843 |
gcctctgttatgagacttcagtttcatgattgctttgttaatgtatgttctctctctct |
10498901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 237 - 444
Target Start/End: Complemental strand, 10586554 - 10586347
Alignment:
| Q |
237 |
accatgtttctgtttctgatcttcatcataaacatcatcatagtaacatcatcagatcttcgacctgggttttactcaaaaacatgtccaaaagctgaaa |
336 |
Q |
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| T |
10586554 |
accatgcttatgtttctgatcttcatcataaacataatcatagtaacatcaacagatcttcgacctgggtattactcaaaaacatgtccacaagctgaaa |
10586455 |
T |
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| Q |
337 |
ccattgtcagagatgttatgagaaaagctcttataagagaaccaagaagtgttgcctctgttatgagacttcagtttcatgattgctttgttaatgtatg |
436 |
Q |
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| T |
10586454 |
caactgtgagagatgttatgagaaatgctcttaaaaaagaaccaagaagtgttgcctctgttatgagatttcaatttcatgattgctttgttaatgtatg |
10586355 |
T |
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| Q |
437 |
ttcgctct |
444 |
Q |
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| T |
10586354 |
ttctctct |
10586347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 25 - 150
Target Start/End: Original strand, 10498472 - 10498597
Alignment:
| Q |
25 |
aactcttaaccaattattgcatgacacatagtaccatagctcactcaatattttcatctaccattaaatatccttcaaatcaaagaggaaagttacaaaa |
124 |
Q |
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| T |
10498472 |
aactctcaaccaattattgcatgacacatagtaccatagctcactcaatattttcatctaccattaaatatccttcaaatcaaagaggaaagttacaaaa |
10498571 |
T |
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| Q |
125 |
ccttatgtctagtgtctcctctttcc |
150 |
Q |
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| T |
10498572 |
ccttatgtctagtgtctcctctttcc |
10498597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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