View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12735_low_9 (Length: 399)
Name: NF12735_low_9
Description: NF12735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12735_low_9 |
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| [»] chr5 (3 HSPs) |
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| [»] scaffold0036 (1 HSPs) |
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| [»] scaffold0891 (1 HSPs) |
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| [»] scaffold2086 (1 HSPs) |
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| [»] scaffold1996 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 38 - 399
Target Start/End: Original strand, 26901113 - 26901474
Alignment:
| Q |
38 |
agaacccacggagacacataacaacacactaggaaagtaacattttggaaatttatgacaataatagcacgtgacgaatcatgttgtccaaattcaccaa |
137 |
Q |
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||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
26901113 |
agaacccacatagacacataacaacacactacgaaagtaacattttggaaatttatgacaataatagcacgtgatgaatcatgttgtccaaattcaccaa |
26901212 |
T |
|
| Q |
138 |
tgaagatccaaatgccccataagcattataatgtgccaattctttcaacctcaaagctttctctttcatttctttacccttttctccatccatcaattcc |
237 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||| |
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| T |
26901213 |
tgaagatccaaatgccccataagcattatcatgtgccaattctttcaacctcaaagctttctctttcatttctttacccttttctccttccattaactcc |
26901312 |
T |
|
| Q |
238 |
ctcacaagaccctcaatcttaaccctcttagcatcttcaatctccaaaccaatgccccattcattacaacaaaatctacaattagtttgttgttcagcaa |
337 |
Q |
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|||||||| |||||| ||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26901313 |
ttcacaagaatctcaattttatccctcttagcatcttcaatttccaaaccaatcccccattcattacaacaaaatctacaattagtttgttgttcagcaa |
26901412 |
T |
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| Q |
338 |
agaaaggccaacatatcattggaacaccaccacaaacgctttctaacgttgaattccaacca |
399 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
26901413 |
aaaaaggccaacatatcattggaacaccaccacaaacactttctaacgttgaattccaacca |
26901474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 189 - 399
Target Start/End: Original strand, 26671978 - 26672188
Alignment:
| Q |
189 |
caaagctttctctttcatttctttacccttttctccatccatcaattccctcacaagaccctcaatcttaaccctcttagcatcttcaatctccaaacca |
288 |
Q |
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||||||||| |||||||| ||||||||||||||||| ||||| || ||| |||||||| ||| || || ||||||||||||||||||||||||||||| |
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| T |
26671978 |
caaagctttttctttcatctctttacccttttctccttccattaactccttcacaagaatctctattttgtccctcttagcatcttcaatctccaaacca |
26672077 |
T |
|
| Q |
289 |
atgccccattcattacaacaaaatctacaattagtttgttgttcagcaaagaaaggccaacatatcattggaacaccaccacaaacgctttctaacgttg |
388 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
26672078 |
atcccccattcattacaacaaaatctacaattagtttgttgttcagcaaaaaaaggccaacatatcattggaacaccaccacaaacactttccaacgttg |
26672177 |
T |
|
| Q |
389 |
aattccaacca |
399 |
Q |
| |
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||||||||||| |
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|
| T |
26672178 |
aattccaacca |
26672188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 189 - 399
Target Start/End: Original strand, 26943576 - 26943786
Alignment:
| Q |
189 |
caaagctttctctttcatttctttacccttttctccatccatcaattccctcacaagaccctcaatcttaaccctcttagcatcttcaatctccaaacca |
288 |
Q |
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||||||||| |||||||| ||||||||||||||||| ||||| || ||| |||||||| ||| || || ||||||||||||||||||||||||||||| |
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| T |
26943576 |
caaagctttttctttcatctctttacccttttctccttccattaactccttcacaagaatctctattttgtccctcttagcatcttcaatctccaaacca |
26943675 |
T |
|
| Q |
289 |
atgccccattcattacaacaaaatctacaattagtttgttgttcagcaaagaaaggccaacatatcattggaacaccaccacaaacgctttctaacgttg |
388 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
26943676 |
atcccccattcattacaacaaaatctacaattagtttgttgttcagcaaaaaaaggccaacatatcattggaacaccaccacaaacactttccaacgttg |
26943775 |
T |
|
| Q |
389 |
aattccaacca |
399 |
Q |
| |
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||||||||||| |
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| T |
26943776 |
aattccaacca |
26943786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 189 - 399
Target Start/End: Complemental strand, 91664 - 91454
Alignment:
| Q |
189 |
caaagctttctctttcatttctttacccttttctccatccatcaattccctcacaagaccctcaatcttaaccctcttagcatcttcaatctccaaacca |
288 |
Q |
| |
|
||||||||| ||||||| |||||||||||||| ||||||| ||| ||| ||||||| | |||||| || ||||||||||||||||||||||||||||| |
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|
| T |
91664 |
caaagcttttgctttcatctctttacccttttcaccatccaacaactccttcacaaggctctcaattttgtccctcttagcatcttcaatctccaaacca |
91565 |
T |
|
| Q |
289 |
atgccccattcattacaacaaaatctacaattagtttgttgttcagcaaagaaaggccaacatatcattggaacaccaccacaaacgctttctaacgttg |
388 |
Q |
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|| |||| |||||||||||||| ||||||||||||||||| || |||||||| ||||||||||||||||||||||| |||| || || || ||||| | |
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| T |
91564 |
atctcccactcattacaacaaaacctacaattagtttgttgctccgcaaagaacggccaacatatcattggaacaccggcacacacactctccaacgtcg |
91465 |
T |
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| Q |
389 |
aattccaacca |
399 |
Q |
| |
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||||||||||| |
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|
| T |
91464 |
aattccaacca |
91454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0891 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0891
Description:
Target: scaffold0891; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 313 - 350
Target Start/End: Complemental strand, 3542 - 3505
Alignment:
| Q |
313 |
ctacaattagtttgttgttcagcaaagaaaggccaaca |
350 |
Q |
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|||||||| ||||||||||||||||||||||||||||| |
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| T |
3542 |
ctacaatttgtttgttgttcagcaaagaaaggccaaca |
3505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 395
Target Start/End: Original strand, 37399191 - 37399271
Alignment:
| Q |
315 |
acaattagtttgttgttcagcaaagaaaggccaacatatcattggaacaccaccacaaacgctttctaacgttgaattcca |
395 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| || ||| ||||| |||||| |||||| || ||||| ||||| |
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| T |
37399191 |
acaattagtttgttgttcagcaaaaaaaggccaacaagccaatggcacaccctcacaaatgctttccaatgttgagttcca |
37399271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2086 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold2086
Description:
Target: scaffold2086; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 350
Target Start/End: Complemental strand, 405 - 368
Alignment:
| Q |
313 |
ctacaattagtttgttgttcagcaaagaaaggccaaca |
350 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||| |
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|
| T |
405 |
ctacaatttgtttgttgctcagcaaagaaaggccaaca |
368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1996 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1996
Description:
Target: scaffold1996; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 350
Target Start/End: Complemental strand, 405 - 368
Alignment:
| Q |
313 |
ctacaattagtttgttgttcagcaaagaaaggccaaca |
350 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||| |
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|
| T |
405 |
ctacaatttgtttgttgctcagcaaagaaaggccaaca |
368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 350
Target Start/End: Original strand, 35866001 - 35866038
Alignment:
| Q |
313 |
ctacaattagtttgttgttcagcaaagaaaggccaaca |
350 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||| |
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|
| T |
35866001 |
ctacaatttgtttgttgctcagcaaagaaaggccaaca |
35866038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 349
Target Start/End: Original strand, 35735587 - 35735623
Alignment:
| Q |
313 |
ctacaattagtttgttgttcagcaaagaaaggccaac |
349 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||| |
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|
| T |
35735587 |
ctacaatttgtttgttgctcagcaaagaaaggccaac |
35735623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 10583133 - 10583101
Alignment:
| Q |
4 |
ttcggggacatccaataaaattgaaacgataca |
36 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |
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|
| T |
10583133 |
ttcggggacatccgataaaattgaaacgataca |
10583101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 6752068 - 6752104
Alignment:
| Q |
4 |
ttcggggacatccaataaaattgaaacgatacaaaga |
40 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |
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|
| T |
6752068 |
ttcggggacatcccgtaaaattgaaacgatacaaaga |
6752104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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