View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12736_high_2 (Length: 436)

Name: NF12736_high_2
Description: NF12736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12736_high_2
NF12736_high_2
[»] chr2 (17 HSPs)
chr2 (13-436)||(30221127-30221550)
chr2 (13-436)||(30787662-30788085)
chr2 (23-436)||(30168587-30169000)
chr2 (13-436)||(30249312-30249735)
chr2 (23-436)||(30186961-30187374)
chr2 (16-436)||(30065600-30066020)
chr2 (16-436)||(30009103-30009523)
chr2 (13-389)||(30039890-30040266)
chr2 (13-389)||(30109368-30109744)
chr2 (13-389)||(30234028-30234404)
chr2 (13-282)||(30078942-30079211)
chr2 (24-433)||(30276915-30277324)
chr2 (13-378)||(30020440-30020805)
chr2 (13-378)||(30121067-30121432)
chr2 (13-378)||(30102838-30103203)
chr2 (13-282)||(30136084-30136353)
chr2 (22-284)||(31803001-31803263)
[»] chr1 (1 HSPs)
chr1 (37-142)||(30271265-30271370)


Alignment Details
Target: chr2 (Bit Score: 400; Significance: 0; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 13 - 436
Target Start/End: Complemental strand, 30221550 - 30221127
Alignment:
Q  13 gagaagaagcacggtaagaaattctgtcaaattttccttctgcgagaacttcagaaatctcttgtatcatctttttgcttttcctactcagttgatgcct 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  30221550 gagaagaagcacggtaagaaattctgtcaaattttccttctgcgagaacttcagaaatctcatgtatcatctttttgcttttcctactcagttgatgcct 30221451  T
Q  113 tgtgcacagattgggaaaatatctcatagaacattgagattttgcatggccctgagtgtcaataagtttctttacctcagcaacagtgttgtccacaccg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||     
T  30221450 tgtgcacagattgggaaaatatctcatagaacattgagatttttcatggccctgagtgtcaataagtttctttgcctcagcaacagtgttgtccacacca 30221351  T
Q  213 ttcagccacttcaggacaatattttcaatctcttctccgttccttctagcctcatcaacactgtgctgcacatgatcttttgatccttcgagcttttgga 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30221350 ttcagccacttcaggacaatattttcaatctcttctccgttccttctagcctcatcaacactgtgctgcacatgatcttttgatccttcgagcttttgga 30221251  T
Q  313 cctcaattttcatcctttcaaggtttcctttgtagtatagtatgtaaccaaattgacgaccaataggtacaaccgtatactcagaaatcttagcagcaac 412  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  30221250 cctcaattttcatcctttgaaggtttcctttgtagtatagtatgtaaccaaattgacaaccaataggtacaaccgtatactcagaaatcttagcagcaac 30221151  T
Q  413 tgaaataataacatccatggccac 436  Q
    ||||||||||||||||||||||||    
T  30221150 tgaaataataacatccatggccac 30221127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 13 - 436
Target Start/End: Complemental strand, 30788085 - 30787662
Alignment:
Q  13 gagaagaagcacggtaagaaattctgtcaaattttccttctgcgagaacttcagaaatctcttgtatcatctttttgcttttcctactcagttgatgcct 112  Q
    |||||| |||||||||||||||| |||  |||||||||||||| || ||||||||||||||||||  |||||||||| | ||||| || |||||||||||    
T  30788085 gagaagcagcacggtaagaaattttgtagaattttccttctgccaggacttcagaaatctcttgtgacatctttttgttcttcctgcttagttgatgcct 30787986  T
Q  113 tgtgcacagattgggaaaatatctcatagaacattgagattttgcatggccctgagtgtcaataagtttctttacctcagcaacagtgttgtccacaccg 212  Q
    ||| |||||||||||| | | |||||||||||| |||| ||||||||| || | ||  ||||||||||||||  ||| | ||| ||||||||||||   |    
T  30787985 tgtacacagattgggacagtgtctcatagaacactgagcttttgcatgaccttcagactcaataagtttcttagccttaccaagagtgttgtccactttg 30787886  T
Q  213 ttcagccacttcaggacaatattttcaatctcttctccgttccttctagcctcatcaacactgtgctgcacatgatcttttgatccttcgagcttttgga 312  Q
    |||||||| ||  ||||||||||||||||||||||||||||||||||||||| ||| ||  |||| ||||    ||||||||||||||| ||||||| ||    
T  30787885 ttcagccaattttggacaatattttcaatctcttctccgttccttctagccttatccacggtgtgttgcatgctatcttttgatccttccagctttttga 30787786  T
Q  313 cctcaattttcatcctttcaaggtttcctttgtagtatagtatgtaaccaaattgacgaccaataggtacaaccgtatactcagaaatcttagcagcaac 412  Q
    ||||  || |||||||||||||||| || |||||||| |||||||||||||||||||| ||||||||||||| | ||||||||| ||| |||||||||||    
T  30787785 cctcggttctcatcctttcaaggttgcccttgtagtagagtatgtaaccaaattgacgtccaataggtacaaacatatactcagcaattttagcagcaac 30787686  T
Q  413 tgaaataataacatccatggccac 436  Q
    ||||| ||||||||||||||||||    
T  30787685 tgaaaaaataacatccatggccac 30787662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 23 - 436
Target Start/End: Complemental strand, 30169000 - 30168587
Alignment:
Q  23 acggtaagaaattctgtcaaattttccttctgcgagaacttcagaaatctcttgtatcatctttttgcttttcctactcagttgatgccttgtgcacaga 122  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |  |||||| | ||||| ||||| || |||||||||||||||    
T  30169000 acggtaagaaattctgtcaaattttccttctgctaggacttcagaaatctcttgtattaagtttttggtcttcctgctcagctggtgccttgtgcacaga 30168901  T
Q  123 ttgggaaaatatctcatagaacattgagattttgcatggccctgagtgtcaataagtttctttacctcagcaacagtgttgtccacaccgttcagccact 222  Q
    |||||||| | ||  ||||||||||||  |||||||||||| | ||  ||| | ||||| ||| ||||||||||  || |||||||   ||||| ||| |    
T  30168900 ttgggaaagtgtcctatagaacattgaacttttgcatggccttcagattcagtgagtttatttgcctcagcaaccatgatgtccactttgttcatccagt 30168801  T
Q  223 tcaggacaatattttcaatctcttctccgttccttctagcctcatcaacactgtgctgcacatgatcttttgatccttcgagcttttggacctcaatttt 322  Q
    || | |||||||| ||||||||||||||||| |||||||||||||||||| |||| ||||||  | |||||| ||| || ||||||||||| | | ||||    
T  30168800 tctgaacaatattctcaatctcttctccgttgcttctagcctcatcaacagtgtgttgcacactagcttttgttccctccagcttttggacattagtttt 30168701  T
Q  323 catcctttcaaggtttcctttgtagtatagtatgtaaccaaattgacgaccaataggtacaaccgtatactcagaaatcttagcagcaactgaaataata 422  Q
    |||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||| |||||| ||    
T  30168700 catcctttcaaggtttcgcttgtagtagagtatgtaaccaaattgacgaccaataggtacaaccatatactcagcaattttagcagcaacagaaatagta 30168601  T
Q  423 acatccatggccac 436  Q
     |||||||||||||    
T  30168600 gcatccatggccac 30168587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 13 - 436
Target Start/End: Complemental strand, 30249735 - 30249312
Alignment:
Q  13 gagaagaagcacggtaagaaattctgtcaaattttccttctgcgagaacttcagaaatctcttgtatcatctttttgcttttcctactcagttgatgcct 112  Q
    |||||| || ||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||  |||||||||| | ||||| || |||||||||||    
T  30249735 gagaagcagaacggtaagaaattttgtcaaattttccttgtgcgaggacttcagaaatctcttgtgacatctttttgttcttcctgcttagttgatgcct 30249636  T
Q  113 tgtgcacagattgggaaaatatctcatagaacattgagattttgcatggccctgagtgtcaataagtttctttacctcagcaacagtgttgtccacaccg 212  Q
    ||| |||||||||||| | | |||||||||||| |||| ||||||||| || | ||  ||||||||||||||  ||| | ||| |||| ||||| |   |    
T  30249635 tgtacacagattgggacagtgtctcatagaacactgagcttttgcatgaccttcagactcaataagtttcttagccttaccaagagtgctgtccgctttg 30249536  T
Q  213 ttcagccacttcaggacaatattttcaatctcttctccgttccttctagcctcatcaacactgtgctgcacatgatcttttgatccttcgagcttttgga 312  Q
    |||||||| ||| | |||||||||||||||||||  |||||||||||||||||||||||  |||| |||||   ||||||||||||||| || |||| ||    
T  30249535 ttcagccagttctgcacaatattttcaatctcttgcccgttccttctagcctcatcaacggtgtgttgcacgctatcttttgatccttccagatttttga 30249436  T
Q  313 cctcaattttcatcctttcaaggtttcctttgtagtatagtatgtaaccaaattgacgaccaataggtacaaccgtatactcagaaatcttagcagcaac 412  Q
    ||||| || ||||||||||||||||||  |||||||| |||||||||||||||||||| ||||||||||||| | ||||||||  ||   ||||||||||    
T  30249435 cctcagttctcatcctttcaaggtttctcttgtagtagagtatgtaaccaaattgacgtccaataggtacaaacatatactcaacaaatgtagcagcaac 30249336  T
Q  413 tgaaataataacatccatggccac 436  Q
    || |||||||||||||||||||||    
T  30249335 tggaataataacatccatggccac 30249312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 23 - 436
Target Start/End: Original strand, 30186961 - 30187374
Alignment:
Q  23 acggtaagaaattctgtcaaattttccttctgcgagaacttcagaaatctcttgtatcatctttttgcttttcctactcagttgatgccttgtgcacaga 122  Q
    ||||||||||| | |||| |||||||| || || || |  | |||||| |||||   |||||||||| | | ||| |||||||| |||||||||||||||    
T  30186961 acggtaagaaactttgtcgaattttccatcggctaggatattagaaatatcttgcgacatctttttggtctccctgctcagttggtgccttgtgcacaga 30187060  T
Q  123 ttgggaaaatatctcatagaacattgagattttgcatggccctgagtgtcaataagtttctttacctcagcaacagtgttgtccacaccgttcagccact 222  Q
    |||||||  |  | |||||| || |||| |||||||||||| | | ||||||||||||||||| ||||||||||  |||||||||||| ||||||||| |    
T  30187061 ttgggaaggtggcccatagagcactgagcttttgcatggccttcactgtcaataagtttctttgcctcagcaaccatgttgtccacactgttcagccagt 30187160  T
Q  223 tcaggacaatattttcaatctcttctccgttccttctagcctcatcaacactgtgctgcacatgatcttttgatccttcgagcttttggacctcaatttt 322  Q
     | ||||||  ||||||||||||||||| ||  |||||||||| |||||  || | ||||||  |||||||| |||||| ||||||||||| ||| |||     
T  30187161 cctggacaaacttttcaatctcttctccattatttctagcctcgtcaactttgcgttgcacactatcttttgttccttctagcttttggacatcagtttc 30187260  T
Q  323 catcctttcaaggtttcctttgtagtatagtatgtaaccaaattgacgaccaataggtacaaccgtatactcagaaatcttagcagcaactgaaataata 422  Q
    |||||||| ||||||  | |||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||    
T  30187261 catcctttgaaggttgtccttgtagtagagtatgtaaccaaattgacgaccaataggtacaaccatatactcagcaattttagcagcaactgaaataata 30187360  T
Q  423 acatccatggccac 436  Q
     |||||||||||||    
T  30187361 ccatccatggccac 30187374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 16 - 436
Target Start/End: Complemental strand, 30066020 - 30065600
Alignment:
Q  16 aagaagcacggtaagaaattctgtcaaattttccttctgcgagaacttcagaaatctcttgtatcatctttttgcttttcctactcagttgatgccttgt 115  Q
    |||||||||||||||| ||||||||||||||||||||| | |  ||||||||||||| |||||||||||||||  | ||| | ||||| |||||||||||    
T  30066020 aagaagcacggtaagatattctgtcaaattttccttctactatgacttcagaaatcttttgtatcatctttttaatcttcttgctcagctgatgccttgt 30065921  T
Q  116 gcacagattgggaaaatatctcatagaacattgagattttgcatggccctgagtgtcaataagtttctttacctcagcaacagtgttgtccacaccgttc 215  Q
    || |||||||||||| | || |||||||| ||||  | ||||| || | | | ||||||| ||||| ||| |||| |||| ||||||||||||   | ||    
T  30065920 gctcagattgggaaagtttcgcatagaacgttgacctattgcaaggtcttcattgtcaattagtttatttgcctccgcaaaagtgttgtccactttgctc 30065821  T
Q  216 agccacttcaggacaatattttcaatctcttctccgttccttctagcctcatcaacactgtgctgcacatgatcttttgatccttcgagcttttggacct 315  Q
    | ||| ||  |||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||   | ||||  ||| || | ||||||||| |    
T  30065820 atccaattttggacaacattttcaatctcttctccgttccttctagcctcatcaacagtgtgttgcacactgttttttattccctccatcttttggacat 30065721  T
Q  316 caattttcatcctttcaaggtttcctttgtagtatagtatgtaaccaaattgacgaccaataggtacaaccgtatactcagaaatcttagcagcaactga 415  Q
    || |||||||| ||| |||||   | |||||||| |||||||||| ||||||||| ||||||||| ||||| ||   |||| ||  |||||||||| |||    
T  30065720 cagttttcatctttttaaggtagtccttgtagtagagtatgtaacgaaattgacgtccaataggtgcaaccataatttcagcaaatttagcagcaattga 30065621  T
Q  416 aataataacatccatggccac 436  Q
    |||||||||||||||||||||    
T  30065620 aataataacatccatggccac 30065600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 16 - 436
Target Start/End: Complemental strand, 30009523 - 30009103
Alignment:
Q  16 aagaagcacggtaagaaattctgtcaaattttccttctgcgagaacttcagaaatctcttgtatcatctttttgcttttcctactcagttgatgccttgt 115  Q
    |||||||||||||||| ||||||||||||||||||||| | |  ||||||||||||| |||||||||||||||  | ||| | ||||| |||||||||||    
T  30009523 aagaagcacggtaagatattctgtcaaattttccttctactatgacttcagaaatcttttgtatcatctttttaatcttcttgctcagctgatgccttgt 30009424  T
Q  116 gcacagattgggaaaatatctcatagaacattgagattttgcatggccctgagtgtcaataagtttctttacctcagcaacagtgttgtccacaccgttc 215  Q
    || |||||||||||| | || |||||||| ||||  | ||||| || | | | ||||||| ||||| ||| |||| |||| ||||||||||||   | ||    
T  30009423 gcgcagattgggaaagtttcgcatagaacgttgacctattgcaaggtcttcattgtcaattagtttatttgcctccgcaaaagtgttgtccactttgctc 30009324  T
Q  216 agccacttcaggacaatattttcaatctcttctccgttccttctagcctcatcaacactgtgctgcacatgatcttttgatccttcgagcttttggacct 315  Q
    | ||| ||  |||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||   | |||   ||| || | ||| ||||| |    
T  30009323 atccaattttggacaacattttcaatctcttctccgttccttctagcctcatcaacagtgtgttgcacactgtttttaattccctccaacttctggacat 30009224  T
Q  316 caattttcatcctttcaaggtttcctttgtagtatagtatgtaaccaaattgacgaccaataggtacaaccgtatactcagaaatcttagcagcaactga 415  Q
    || |||||||| ||| |||||   | |||||||| |||||||||| ||||||||| ||||||||| ||||| ||   |||| ||| |||||||||| |||    
T  30009223 cagttttcatctttttaaggtagtccttgtagtagagtatgtaacgaaattgacgtccaataggtgcaaccataatttcagcaattttagcagcaattga 30009124  T
Q  416 aataataacatccatggccac 436  Q
    |||||||||||||||||||||    
T  30009123 aataataacatccatggccac 30009103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 13 - 389
Target Start/End: Original strand, 30039890 - 30040266
Alignment:
Q  13 gagaagaagcacggtaagaaattctgtcaaattttccttctgcgagaacttcagaaatctcttgtatcatctttttgcttttcctactcagttgatgcct 112  Q
    |||||| |||||||||||||||| | |||||  |||||||||| |  | ||||||||||| ||| ||||||||| |  | |||||||| || || |||||    
T  30039890 gagaagcagcacggtaagaaattttatcaaaacttccttctgctacgagttcagaaatcttttgcatcatctttatcatcttcctacttagctggtgcct 30039989  T
Q  113 tgtgcacagattgggaaaatatctcatagaacattgagattttgcatggccctgagtgtcaataagtttctttacctcagcaacagtgttgtccacaccg 212  Q
    |||||||| ||||||||||| ||||||||||||||||| |||||||||||| | | ||||||||||||  ||| |||| |||||||||||||||||   |    
T  30039990 tgtgcacaaattgggaaaatgtctcatagaacattgagcttttgcatggccttcactgtcaataagttcatttgcctccgcaacagtgttgtccactgtg 30040089  T
Q  213 ttcagccacttcaggacaatattttcaatctcttctccgttccttctagcctcatcaacactgtgctgcacatgatcttttgatccttcgagcttttgga 312  Q
    |||| ||| ||| ||||||||||||||||||||||||||||||||||  ||||||||||| |||| |||| |   ||||||  ||| || |    |||||    
T  30040090 ttcaaccaattctggacaatattttcaatctcttctccgttccttctgacctcatcaacattgtgttgcaaaatgtcttttattccctccacacgttgga 30040189  T
Q  313 cctcaattttcatcctttcaaggtttcctttgtagtatagtatgtaaccaaattgacgaccaataggtacaaccgta 389  Q
    | ||| || |||||||   |||||| || ||||| || |||||||||||||||||||||||||||| | ||||||||    
T  30040190 catcagttgtcatcctggtaaggttgcccttgtaataaagtatgtaaccaaattgacgaccaatagcttcaaccgta 30040266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 13 - 389
Target Start/End: Original strand, 30109368 - 30109744
Alignment:
Q  13 gagaagaagcacggtaagaaattctgtcaaattttccttctgcgagaacttcagaaatctcttgtatcatctttttgcttttcctactcagttgatgcct 112  Q
    |||||| |||||||||||||||| | |||||  |||||||||| |  | ||||||||||| ||| ||||||||| |  | |||||||| || || |||||    
T  30109368 gagaagcagcacggtaagaaattttatcaaaacttccttctgctacgagttcagaaatcttttgcatcatctttatcatcttcctacttagctggtgcct 30109467  T
Q  113 tgtgcacagattgggaaaatatctcatagaacattgagattttgcatggccctgagtgtcaataagtttctttacctcagcaacagtgttgtccacaccg 212  Q
    |||||||| ||||||||||| ||||||||||||||||| |||||||||||| | | ||||||||||||  ||| |||| |||||||||||||||||   |    
T  30109468 tgtgcacaaattgggaaaatgtctcatagaacattgagcttttgcatggccttcactgtcaataagttcatttgcctccgcaacagtgttgtccactgtg 30109567  T
Q  213 ttcagccacttcaggacaatattttcaatctcttctccgttccttctagcctcatcaacactgtgctgcacatgatcttttgatccttcgagcttttgga 312  Q
    |||| ||| ||| ||||||||||||||||||||||||||||||||||  ||||||||||| |||| |||| |   ||||||  ||| || |    |||||    
T  30109568 ttcaaccaattctggacaatattttcaatctcttctccgttccttctgacctcatcaacattgtgttgcaaaatgtcttttattccctccacacgttgga 30109667  T
Q  313 cctcaattttcatcctttcaaggtttcctttgtagtatagtatgtaaccaaattgacgaccaataggtacaaccgta 389  Q
    | ||| || |||||||   |||||| || ||||| || |||||||||||||||||||||||||||| | ||||||||    
T  30109668 catcagttgtcatcctggtaaggttgcccttgtaataaagtatgtaaccaaattgacgaccaatagcttcaaccgta 30109744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 13 - 389
Target Start/End: Original strand, 30234028 - 30234404
Alignment:
Q  13 gagaagaagcacggtaagaaattctgtcaaattttccttctgcgagaacttcagaaatctcttgtatcatctttttgcttttcctactcagttgatgcct 112  Q
    |||||| |||||||||||||||| | |||||  |||||||||| |  | ||||||||||| ||| ||||||||| |  | |||||||| || || |||||    
T  30234028 gagaagcagcacggtaagaaattttatcaaaacttccttctgctacgagttcagaaatcttttgcatcatctttatcatcttcctacttagctggtgcct 30234127  T
Q  113 tgtgcacagattgggaaaatatctcatagaacattgagattttgcatggccctgagtgtcaataagtttctttacctcagcaacagtgttgtccacaccg 212  Q
    |||||||| ||||||||||| ||||||||||||||||| |||||||||||| | | ||||||||||||  ||| |||| |||||||||||||||||   |    
T  30234128 tgtgcacaaattgggaaaatgtctcatagaacattgagcttttgcatggccttcactgtcaataagttcatttgcctccgcaacagtgttgtccactgtg 30234227  T
Q  213 ttcagccacttcaggacaatattttcaatctcttctccgttccttctagcctcatcaacactgtgctgcacatgatcttttgatccttcgagcttttgga 312  Q
    |||| ||| ||| ||||||||||||||||||||||||||||||||||  ||||||||||| |||| |||| |   ||||||  ||| || |    |||||    
T  30234228 ttcaaccaattctggacaatattttcaatctcttctccgttccttctgacctcatcaacattgtgttgcaaaatgtcttttattccctccacacgttgga 30234327  T
Q  313 cctcaattttcatcctttcaaggtttcctttgtagtatagtatgtaaccaaattgacgaccaataggtacaaccgta 389  Q
    | ||| || |||||||   |||||| || ||||| || |||||||||||||||||||||||||||| | ||||||||    
T  30234328 catcagttgtcatcctggtaaggttgcccttgtaataaagtatgtaaccaaattgacgaccaatagcttcaaccgta 30234404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 13 - 282
Target Start/End: Complemental strand, 30079211 - 30078942
Alignment:
Q  13 gagaagaagcacggtaagaaattctgtcaaattttccttctgcgagaacttcagaaatctcttgtatcatctttttgcttttcctactcagttgatgcct 112  Q
    |||||| ||| |||||||||||| | |||||  |||||||||| |  | ||||||||||  ||| ||||||||| |  | |||||||| || || |||||    
T  30079211 gagaagcagcgcggtaagaaattttatcaaaacttccttctgctacgatttcagaaatcgtttgcatcatctttatcatcttcctacttagctggtgcct 30079112  T
Q  113 tgtgcacagattgggaaaatatctcatagaacattgagattttgcatggccctgagtgtcaataagtttctttacctcagcaacagtgttgtccacaccg 212  Q
    |||||||| ||||||||||| ||||||||||||||||| |||||||||||| | | ||||||||||||  ||| |||| |||||||||||||||||   |    
T  30079111 tgtgcacaaattgggaaaatgtctcatagaacattgagcttttgcatggccttcactgtcaataagttcatttgcctccgcaacagtgttgtccactgtg 30079012  T
Q  213 ttcagccacttcaggacaatattttcaatctcttctccgttccttctagcctcatcaacactgtgctgca 282  Q
    |||| ||| ||| |||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||    
T  30079011 ttcaaccaattctggacaatattttcaatctcttctccgttccttctggcctcatcaacattgtgttgca 30078942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 24 - 433
Target Start/End: Complemental strand, 30277324 - 30276915
Alignment:
Q  24 cggtaagaaattctgtcaaattttccttctgcgagaacttcagaaatctcttgtatcatctttttgcttttcctactcagttgatgccttgtgcacagat 123  Q
    |||||||||||||| ||||||||||||||| | || || |||||||||||||||||   ||||||| | ||| | || ||||| ||||||||| ||||||    
T  30277324 cggtaagaaattctctcaaattttccttcttctaggacatcagaaatctcttgtattgcctttttggtcttcttgctaagttggtgccttgtgtacagat 30277225  T
Q  124 tgggaaaatatctcatagaacattgagattttgcatggccctgagtgtcaataagtttctttacctcagcaacagtgttgtccacaccgttcagccactt 223  Q
    | || || | || ||| |||||||||| |||||||||||| |  |||||||||||||||||  |||||||||  |||| ||  ||   ||||||||| ||    
T  30277224 tagggaagtgtcccatggaacattgagcttttgcatggccttctgtgtcaataagtttcttggcctcagcaatggtgtagtttactttgttcagccagtt 30277125  T
Q  224 caggacaatattttcaatctcttctccgttccttctagcctcatcaacactgtgctgcacatgatcttttgatccttcgagcttttggacctcaattttc 323  Q
    | |||| |||||||||||||||||||| |||| |||||||||||||||| |||| ||||||   |||||| |||| || || |||||||   |   | ||    
T  30277124 ctggacgatattttcaatctcttctccattccgtctagcctcatcaacagtgtgttgcacactgtcttttaatccctccagattttggatagcggctgtc 30277025  T
Q  324 atcctttcaaggtttcctttgtagtatagtatgtaaccaaattgacgaccaataggtacaaccgtatactcagaaatcttagcagcaactgaaataataa 423  Q
    | ||||  |||||| || ||||| |||| |||||||||||||||  | ||||||||| |||||||| | |||||||| ||||| |||| |||||| |||     
T  30277024 acccttaaaaggttgcccttgtaatatattatgtaaccaaattgttgtccaataggtgcaaccgtaaattcagaaattttagctgcaattgaaatgatag 30276925  T
Q  424 catccatggc 433  Q
     |||||||||    
T  30276924 aatccatggc 30276915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 13 - 378
Target Start/End: Complemental strand, 30020805 - 30020440
Alignment:
Q  13 gagaagaagcacggtaagaaattctgtcaaattttccttctgcgagaacttcagaaatctcttgtatcatctttttgcttttcctactcagttgatgcct 112  Q
    |||||| ||||||||| |||||| | |||||  ||| |||||| |  | ||||||||||  ||| ||||| ||| |  | |||||||| || || |||||    
T  30020805 gagaagcagcacggtatgaaattttatcaaaacttctttctgctacgagttcagaaatcgtttgcatcatgtttgtcatcttcctacttagctggtgcct 30020706  T
Q  113 tgtgcacagattgggaaaatatctcatagaacattgagattttgcatggccctgagtgtcaataagtttctttacctcagcaacagtgttgtccacaccg 212  Q
    |||||||| ||||||||||| ||||||||||||||||| |||||||||||| | | ||||||||| ||  ||| | || |||||||||||||||||   |    
T  30020705 tgtgcacaaattgggaaaatgtctcatagaacattgagcttttgcatggccttcactgtcaataatttcatttgcatctgcaacagtgttgtccactgtg 30020606  T
Q  213 ttcagccacttcaggacaatattttcaatctcttctccgttccttctagcctcatcaacactgtgctgcacatgatcttttgatccttcgagcttttgga 312  Q
    |||| ||| ||| |||||||||||||||||||||||||||||||||| |||||||||||| |||| |||| |   ||||||  ||| || |  | |||||    
T  30020605 ttcaaccaattctggacaatattttcaatctcttctccgttccttctggcctcatcaacattgtgttgcaaaatgtcttttattccctccaaatgttgga 30020506  T
Q  313 cctcaattttcatcctttcaaggtttcctttgtagtatagtatgtaaccaaattgacgaccaatag 378  Q
    | ||| || ||||| |   |||||| || ||||| || ||||||||||||||||||||||||||||    
T  30020505 catcagttgtcatcttggtaaggttgcccttgtaatagagtatgtaaccaaattgacgaccaatag 30020440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 13 - 378
Target Start/End: Original strand, 30121067 - 30121432
Alignment:
Q  13 gagaagaagcacggtaagaaattctgtcaaattttccttctgcgagaacttcagaaatctcttgtatcatctttttgcttttcctactcagttgatgcct 112  Q
    |||||| ||||||||| |||||| | |||||  ||| |||||| |  | ||||||||||  ||| ||||| ||| |  | |||||||| || || |||||    
T  30121067 gagaagcagcacggtatgaaattttatcaaaacttctttctgctacgagttcagaaatcgtttgcatcatgtttgtcatcttcctacttagctggtgcct 30121166  T
Q  113 tgtgcacagattgggaaaatatctcatagaacattgagattttgcatggccctgagtgtcaataagtttctttacctcagcaacagtgttgtccacaccg 212  Q
    |||||||| ||||||||||| ||||||||||||||||| |||||||||||| | | ||||||||| ||  ||| | || |||||||||||||||||   |    
T  30121167 tgtgcacaaattgggaaaatgtctcatagaacattgagcttttgcatggccttcactgtcaataatttcatttgcatctgcaacagtgttgtccactgtg 30121266  T
Q  213 ttcagccacttcaggacaatattttcaatctcttctccgttccttctagcctcatcaacactgtgctgcacatgatcttttgatccttcgagcttttgga 312  Q
    |||| ||| ||| |||||||||||||||||||||||||||||||||| |||||||||||| |||| |||| |   ||||||  ||| || |  | |||||    
T  30121267 ttcaaccaattctggacaatattttcaatctcttctccgttccttctggcctcatcaacattgtgttgcaaaatgtcttttattccctccaaatgttgga 30121366  T
Q  313 cctcaattttcatcctttcaaggtttcctttgtagtatagtatgtaaccaaattgacgaccaatag 378  Q
    | ||| || ||||| |   |||||| || ||||| || ||||||||||||||||||||||||||||    
T  30121367 catcagttgtcatcttggtaaggttgcccttgtaatagagtatgtaaccaaattgacgaccaatag 30121432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 13 - 378
Target Start/End: Original strand, 30102838 - 30103203
Alignment:
Q  13 gagaagaagcacggtaagaaattctgtcaaattttccttctgcgagaacttcagaaatctcttgtatcatctttttgcttttcctactcagttgatgcct 112  Q
    |||||| ||||||||| |||||| | |||||  ||| |||||| |  | ||||||||||  ||| ||||| ||| |  | |||||||| || || |||||    
T  30102838 gagaagcagcacggtatgaaattttatcaaaacttctttctgctacgagttcagaaatcgtttgcatcatgtttgtcatcttcctacttagctggtgcct 30102937  T
Q  113 tgtgcacagattgggaaaatatctcatagaacattgagattttgcatggccctgagtgtcaataagtttctttacctcagcaacagtgttgtccacaccg 212  Q
    |||||||| ||||||||||| ||||||||||||||||| |||||||||||| | | ||||||||| ||  ||| | |||||||||||| |||||||   |    
T  30102938 tgtgcacaaattgggaaaatgtctcatagaacattgagcttttgcatggccttcactgtcaataaattcatttgcatcagcaacagtgatgtccactgtg 30103037  T
Q  213 ttcagccacttcaggacaatattttcaatctcttctccgttccttctagcctcatcaacactgtgctgcacatgatcttttgatccttcgagcttttgga 312  Q
    |||| ||| ||| |||||||||||||||||||||| ||||||||||| |||||||||||| |||| |||| |   ||||||  ||| || |  | |||||    
T  30103038 ttcaaccaattctggacaatattttcaatctcttcaccgttccttctggcctcatcaacattgtgttgcaaaatgtcttttattccctccaaatgttgga 30103137  T
Q  313 cctcaattttcatcctttcaaggtttcctttgtagtatagtatgtaaccaaattgacgaccaatag 378  Q
    | ||| || ||||| |   |||||| || ||||| || ||||||||||||||||||||||||||||    
T  30103138 catcagttgtcatcttggtaaggttgcccttgtaatagagtatgtaaccaaattgacgaccaatag 30103203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 13 - 282
Target Start/End: Original strand, 30136084 - 30136353
Alignment:
Q  13 gagaagaagcacggtaagaaattctgtcaaattttccttctgcgagaacttcagaaatctcttgtatcatctttttgcttttcctactcagttgatgcct 112  Q
    |||||| ||||||||| |||||| | |||||  |||||| ||| |  | ||||||||||  ||| ||||||||| |  | ||| |||| || || |||||    
T  30136084 gagaagcagcacggtaggaaattttatcaaaacttccttttgctacgatttcagaaatcgtttgcatcatctttatcatcttcttacttagctggtgcct 30136183  T
Q  113 tgtgcacagattgggaaaatatctcatagaacattgagattttgcatggccctgagtgtcaataagtttctttacctcagcaacagtgttgtccacaccg 212  Q
    |||||||| ||||||||||| ||||||||||||||||| |||||||||||| | | ||||||||| ||  ||| | || |||||||||||||||||   |    
T  30136184 tgtgcacaaattgggaaaatgtctcatagaacattgagcttttgcatggccttcactgtcaataatttcatttgcatctgcaacagtgttgtccactgtg 30136283  T
Q  213 ttcagccacttcaggacaatattttcaatctcttctccgttccttctagcctcatcaacactgtgctgca 282  Q
    |||| ||| ||| |||||||||||||||||||||| ||||||||||| |||||||||||| |||| ||||    
T  30136284 ttcaaccaattctggacaatattttcaatctcttccccgttccttctggcctcatcaacattgtgttgca 30136353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 284
Target Start/End: Complemental strand, 31803263 - 31803001
Alignment:
Q  22 cacggtaagaaattctgtcaaattttccttctgcgagaacttcagaaatctcttgtatcatctttttgcttttcctactcagttgatgccttgtgcacag 121  Q
    |||||||||||||||  ||||||| ||||||||| |  ||||| ||||| ||||| |||||||||    | ||||| ||||   | |||||| ||  | |    
T  31803263 cacggtaagaaattcgttcaaattctccttctgctatgacttcggaaatatcttgaatcatctttgccatgttcctgctcaaccggtgccttttgatcgg 31803164  T
Q  122 attgggaaaatatctcatagaacattgagattttgcatggccctgagtgtcaataagtttctttacctcagcaacagtgttgtccacaccgttcagccac 221  Q
    ||||||| | | || ||||||||| |||   || |||||| | |  ||||||| |||||| ||| | |||||||| |||||| |  |   |||||||||     
T  31803163 attgggacagtgtcccatagaacactgaaccttcgcatggtcttcggtgtcaagaagtttgtttgcatcagcaacggtgttggcagctttgttcagccaa 31803064  T
Q  222 ttcaggacaatattttcaatctcttctccgttccttctagcctcatcaacactgtgctgcaca 284  Q
    ||  |||||| ||||||||| | ||||||||||||| |||||||||||||  |||| ||||||    
T  31803063 ttgtggacaagattttcaattttttctccgttccttatagcctcatcaactgtgtgttgcaca 31803001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 37 - 142
Target Start/End: Complemental strand, 30271370 - 30271265
Alignment:
Q  37 tgtcaaattttccttctgcgagaacttcagaaatctcttgtatcatctttttgcttttcctactcagttgatgccttgtgcacagattgggaaaatatct 136  Q
    ||||||||||||||||||| |  || ||||||||||||| |  |||||||||  | |||||    ||||||||||||||||||| || |||||||||||     
T  30271370 tgtcaaattttccttctgctattacctcagaaatctcttctgacatcttttttatcttcctgtctagttgatgccttgtgcacaaatagggaaaatatcc 30271271  T
Q  137 cataga 142  Q
    ||||||    
T  30271270 cataga 30271265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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