View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12736_high_3 (Length: 412)
Name: NF12736_high_3
Description: NF12736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12736_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 381; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 37419340 - 37419732
Alignment:
| Q |
1 |
tcatgttagaacaacgattatgaaattatccaagagatagagtaaatgaaatgaaccattagacaatttttcactagtgaaagttcaaaacttcataatc |
100 |
Q |
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| T |
37419340 |
tcatgttagaacaacgattatgaaattatccaagagatagagtaaatgaaatgaaccattagacaatttatcactagtgaaagttcaaaacttcataatc |
37419439 |
T |
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| Q |
101 |
atataatatgctaaagtattttaatcaccagagaacaattattaaaaagtctcccgagccttgtatattacttactaattacaaatttagttatttactt |
200 |
Q |
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| T |
37419440 |
atataatatgctaaagtattttaatcaccagagaacaattattaaaaagtctcccgagccttgtatattacttactaattacaaatttagttatttactt |
37419539 |
T |
|
| Q |
201 |
tgatacaacaatgtaaatttcttcttatcaacattaacttaaaggttgaagcaagaaaacataccggattaagatacagataaagccgtaaacattccac |
300 |
Q |
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| T |
37419540 |
tgatacaacaatgtaaatttcttcttatcaacattaacttaaaggttgaagcaagaaaacataccggattaagatacagataaagccgtaaacattccac |
37419639 |
T |
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| Q |
301 |
attaataatactgaaaagcttgcgaacaaaaacccccatttgttgcacactcttgacctttgaagttattagagaaatatcagccttcgcaac |
393 |
Q |
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| T |
37419640 |
attaataatactgaaaagcttgcgaacaaaaatccccatttgttgcacgctcttgacctttgaagttattagagaaatatcagccttcgcaac |
37419732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 113 - 291
Target Start/End: Original strand, 37427906 - 37428084
Alignment:
| Q |
113 |
aaagtattttaatcaccagagaacaattattaaaaagtctcccgagccttgtatattacttactaattacaaatttagttatttactttgatacaacaat |
212 |
Q |
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| T |
37427906 |
aaagtgttttaaccaccagagaacaattattaaaaagtttccctagccttgtattttacttactaattacaaatttagttatttactttgatacaacaat |
37428005 |
T |
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| Q |
213 |
gtaaatttcttcttatcaacattaacttaaaggttgaagcaagaaaacataccggattaagatacagataaagccgtaa |
291 |
Q |
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| T |
37428006 |
gtaaatttcttcttatcaacattaacttaaaggttgaagcaagaaaacataccggattaagatgcagataaagccgtaa |
37428084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 37427826 - 37427902
Alignment:
| Q |
1 |
tcatgttagaacaacg-attatgaaattatccaagagatagagtaaatgaaatgaaccattagacaatttttcacta |
76 |
Q |
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| T |
37427826 |
tcatgttagaacaacatattaagaaattatccaagagattgagtaaatgaaatgaacaattagacaatttttcacta |
37427902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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