View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12736_low_1 (Length: 443)
Name: NF12736_low_1
Description: NF12736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12736_low_1 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 11 - 443
Target Start/End: Complemental strand, 36193167 - 36192727
Alignment:
| Q |
11 |
cacagatttgatgatttaaacactgagaagttgcgcatgtcagcaagacaaagtggaacagagatagatttattttacttcgacccaaaagagattgatt |
110 |
Q |
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| T |
36193167 |
cacagatttgatgatttaaacactgagaagttgcgcatgtcagcaagacaaagtggaacagagatagatttattttacttcgacccaaaagagatggatt |
36193068 |
T |
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| Q |
111 |
gggaagattactttatgaacactcatctccctggtttagtcaagtacattttcaagtgatacatatacgaagatttgattaaattcaaatgtgc------ |
204 |
Q |
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| T |
36193067 |
gggaagattactttatgaacactcatctccctggtttagtcaagtacattttcaagtgatac------gaagatttgattaaattcaaatgtgctatata |
36192974 |
T |
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| Q |
205 |
--------actacattacattattgtggggttgtatatttaattatttattgttcaagggtggtgcaattgatatattaggttgcttccataatattcac |
296 |
Q |
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| T |
36192973 |
gaagaaggactacattacattattgtggggttgtatatttaattatttattgttcaagggtggtgtaattgatat--taggttgcttccataatattgac |
36192876 |
T |
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| Q |
297 |
aacgtttcctggagtctcacctatcatccatgcttttttcatcaacaaatctcgaattcgagtcttgttgatgagacaaaatatggttggaagaagacac |
396 |
Q |
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| T |
36192875 |
aacgtttcctggagtctcacctatcatccatgcttttttcatcaacaaatctcgaattcgagtcttgttgatgagacaaaatgtggttggaagaagacac |
36192776 |
T |
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| Q |
397 |
tccactaaaagttaaa--agtcaagtcagattctttggtgaaacttaat |
443 |
Q |
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| T |
36192775 |
tccattaaaagttaaaggactcaagtcagattctttggtgaaaattaat |
36192727 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 51 - 100
Target Start/End: Original strand, 19507432 - 19507481
Alignment:
| Q |
51 |
cagcaagacaaagtggaacagagatagatttattttacttcgacccaaaa |
100 |
Q |
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| T |
19507432 |
cagcaagacaaagtggagtagagatggatttattttactttgacccaaaa |
19507481 |
T |
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