View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12736_low_2 (Length: 436)

Name: NF12736_low_2
Description: NF12736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12736_low_2
NF12736_low_2
[»] chr2 (17 HSPs)
chr2 (13-436)||(30221127-30221550)
chr2 (13-436)||(30787662-30788085)
chr2 (23-436)||(30168587-30169000)
chr2 (13-436)||(30249312-30249735)
chr2 (23-436)||(30186961-30187374)
chr2 (16-436)||(30065600-30066020)
chr2 (16-436)||(30009103-30009523)
chr2 (13-389)||(30039890-30040266)
chr2 (13-389)||(30109368-30109744)
chr2 (13-389)||(30234028-30234404)
chr2 (13-282)||(30078942-30079211)
chr2 (24-433)||(30276915-30277324)
chr2 (13-378)||(30020440-30020805)
chr2 (13-378)||(30121067-30121432)
chr2 (13-378)||(30102838-30103203)
chr2 (13-282)||(30136084-30136353)
chr2 (22-284)||(31803001-31803263)
[»] chr1 (1 HSPs)
chr1 (37-142)||(30271265-30271370)


Alignment Details
Target: chr2 (Bit Score: 400; Significance: 0; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 13 - 436
Target Start/End: Complemental strand, 30221550 - 30221127
Alignment:
Q  13 gagaagaagcacggtaagaaattctgtcaaattttccttctgcgagaacttcagaaatctcttgtatcatctttttgcttttcctactcagttgatgcct 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  30221550 gagaagaagcacggtaagaaattctgtcaaattttccttctgcgagaacttcagaaatctcatgtatcatctttttgcttttcctactcagttgatgcct 30221451  T
Q  113 tgtgcacagattgggaaaatatctcatagaacattgagattttgcatggccctgagtgtcaataagtttctttacctcagcaacagtgttgtccacaccg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||     
T  30221450 tgtgcacagattgggaaaatatctcatagaacattgagatttttcatggccctgagtgtcaataagtttctttgcctcagcaacagtgttgtccacacca 30221351  T
Q  213 ttcagccacttcaggacaatattttcaatctcttctccgttccttctagcctcatcaacactgtgctgcacatgatcttttgatccttcgagcttttgga 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30221350 ttcagccacttcaggacaatattttcaatctcttctccgttccttctagcctcatcaacactgtgctgcacatgatcttttgatccttcgagcttttgga 30221251  T
Q  313 cctcaattttcatcctttcaaggtttcctttgtagtatagtatgtaaccaaattgacgaccaataggtacaaccgtatactcagaaatcttagcagcaac 412  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  30221250 cctcaattttcatcctttgaaggtttcctttgtagtatagtatgtaaccaaattgacaaccaataggtacaaccgtatactcagaaatcttagcagcaac 30221151  T
Q  413 tgaaataataacatccatggccac 436  Q
    ||||||||||||||||||||||||    
T  30221150 tgaaataataacatccatggccac 30221127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 13 - 436
Target Start/End: Complemental strand, 30788085 - 30787662
Alignment:
Q  13 gagaagaagcacggtaagaaattctgtcaaattttccttctgcgagaacttcagaaatctcttgtatcatctttttgcttttcctactcagttgatgcct 112  Q
    |||||| |||||||||||||||| |||  |||||||||||||| || ||||||||||||||||||  |||||||||| | ||||| || |||||||||||    
T  30788085 gagaagcagcacggtaagaaattttgtagaattttccttctgccaggacttcagaaatctcttgtgacatctttttgttcttcctgcttagttgatgcct 30787986  T
Q  113 tgtgcacagattgggaaaatatctcatagaacattgagattttgcatggccctgagtgtcaataagtttctttacctcagcaacagtgttgtccacaccg 212  Q
    ||| |||||||||||| | | |||||||||||| |||| ||||||||| || | ||  ||||||||||||||  ||| | ||| ||||||||||||   |    
T  30787985 tgtacacagattgggacagtgtctcatagaacactgagcttttgcatgaccttcagactcaataagtttcttagccttaccaagagtgttgtccactttg 30787886  T
Q  213 ttcagccacttcaggacaatattttcaatctcttctccgttccttctagcctcatcaacactgtgctgcacatgatcttttgatccttcgagcttttgga 312  Q
    |||||||| ||  ||||||||||||||||||||||||||||||||||||||| ||| ||  |||| ||||    ||||||||||||||| ||||||| ||    
T  30787885 ttcagccaattttggacaatattttcaatctcttctccgttccttctagccttatccacggtgtgttgcatgctatcttttgatccttccagctttttga 30787786  T
Q  313 cctcaattttcatcctttcaaggtttcctttgtagtatagtatgtaaccaaattgacgaccaataggtacaaccgtatactcagaaatcttagcagcaac 412  Q
    ||||  || |||||||||||||||| || |||||||| |||||||||||||||||||| ||||||||||||| | ||||||||| ||| |||||||||||    
T  30787785 cctcggttctcatcctttcaaggttgcccttgtagtagagtatgtaaccaaattgacgtccaataggtacaaacatatactcagcaattttagcagcaac 30787686  T
Q  413 tgaaataataacatccatggccac 436  Q
    ||||| ||||||||||||||||||    
T  30787685 tgaaaaaataacatccatggccac 30787662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 23 - 436
Target Start/End: Complemental strand, 30169000 - 30168587
Alignment:
Q  23 acggtaagaaattctgtcaaattttccttctgcgagaacttcagaaatctcttgtatcatctttttgcttttcctactcagttgatgccttgtgcacaga 122  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |  |||||| | ||||| ||||| || |||||||||||||||    
T  30169000 acggtaagaaattctgtcaaattttccttctgctaggacttcagaaatctcttgtattaagtttttggtcttcctgctcagctggtgccttgtgcacaga 30168901  T
Q  123 ttgggaaaatatctcatagaacattgagattttgcatggccctgagtgtcaataagtttctttacctcagcaacagtgttgtccacaccgttcagccact 222  Q
    |||||||| | ||  ||||||||||||  |||||||||||| | ||  ||| | ||||| ||| ||||||||||  || |||||||   ||||| ||| |    
T  30168900 ttgggaaagtgtcctatagaacattgaacttttgcatggccttcagattcagtgagtttatttgcctcagcaaccatgatgtccactttgttcatccagt 30168801  T
Q  223 tcaggacaatattttcaatctcttctccgttccttctagcctcatcaacactgtgctgcacatgatcttttgatccttcgagcttttggacctcaatttt 322  Q
    || | |||||||| ||||||||||||||||| |||||||||||||||||| |||| ||||||  | |||||| ||| || ||||||||||| | | ||||    
T  30168800 tctgaacaatattctcaatctcttctccgttgcttctagcctcatcaacagtgtgttgcacactagcttttgttccctccagcttttggacattagtttt 30168701  T
Q  323 catcctttcaaggtttcctttgtagtatagtatgtaaccaaattgacgaccaataggtacaaccgtatactcagaaatcttagcagcaactgaaataata 422  Q
    |||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||| |||||| ||    
T  30168700 catcctttcaaggtttcgcttgtagtagagtatgtaaccaaattgacgaccaataggtacaaccatatactcagcaattttagcagcaacagaaatagta 30168601  T
Q  423 acatccatggccac 436  Q
     |||||||||||||    
T  30168600 gcatccatggccac 30168587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 13 - 436
Target Start/End: Complemental strand, 30249735 - 30249312
Alignment:
Q  13 gagaagaagcacggtaagaaattctgtcaaattttccttctgcgagaacttcagaaatctcttgtatcatctttttgcttttcctactcagttgatgcct 112  Q
    |||||| || ||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||  |||||||||| | ||||| || |||||||||||    
T  30249735 gagaagcagaacggtaagaaattttgtcaaattttccttgtgcgaggacttcagaaatctcttgtgacatctttttgttcttcctgcttagttgatgcct 30249636  T
Q  113 tgtgcacagattgggaaaatatctcatagaacattgagattttgcatggccctgagtgtcaataagtttctttacctcagcaacagtgttgtccacaccg 212  Q
    ||| |||||||||||| | | |||||||||||| |||| ||||||||| || | ||  ||||||||||||||  ||| | ||| |||| ||||| |   |    
T  30249635 tgtacacagattgggacagtgtctcatagaacactgagcttttgcatgaccttcagactcaataagtttcttagccttaccaagagtgctgtccgctttg 30249536  T
Q  213 ttcagccacttcaggacaatattttcaatctcttctccgttccttctagcctcatcaacactgtgctgcacatgatcttttgatccttcgagcttttgga 312  Q
    |||||||| ||| | |||||||||||||||||||  |||||||||||||||||||||||  |||| |||||   ||||||||||||||| || |||| ||    
T  30249535 ttcagccagttctgcacaatattttcaatctcttgcccgttccttctagcctcatcaacggtgtgttgcacgctatcttttgatccttccagatttttga 30249436  T
Q  313 cctcaattttcatcctttcaaggtttcctttgtagtatagtatgtaaccaaattgacgaccaataggtacaaccgtatactcagaaatcttagcagcaac 412  Q
    ||||| || ||||||||||||||||||  |||||||| |||||||||||||||||||| ||||||||||||| | ||||||||  ||   ||||||||||    
T  30249435 cctcagttctcatcctttcaaggtttctcttgtagtagagtatgtaaccaaattgacgtccaataggtacaaacatatactcaacaaatgtagcagcaac 30249336  T
Q  413 tgaaataataacatccatggccac 436  Q
    || |||||||||||||||||||||    
T  30249335 tggaataataacatccatggccac 30249312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 23 - 436
Target Start/End: Original strand, 30186961 - 30187374
Alignment:
Q  23 acggtaagaaattctgtcaaattttccttctgcgagaacttcagaaatctcttgtatcatctttttgcttttcctactcagttgatgccttgtgcacaga 122  Q
    ||||||||||| | |||| |||||||| || || || |  | |||||| |||||   |||||||||| | | ||| |||||||| |||||||||||||||    
T  30186961 acggtaagaaactttgtcgaattttccatcggctaggatattagaaatatcttgcgacatctttttggtctccctgctcagttggtgccttgtgcacaga 30187060  T
Q  123 ttgggaaaatatctcatagaacattgagattttgcatggccctgagtgtcaataagtttctttacctcagcaacagtgttgtccacaccgttcagccact 222  Q
    |||||||  |  | |||||| || |||| |||||||||||| | | ||||||||||||||||| ||||||||||  |||||||||||| ||||||||| |    
T  30187061 ttgggaaggtggcccatagagcactgagcttttgcatggccttcactgtcaataagtttctttgcctcagcaaccatgttgtccacactgttcagccagt 30187160  T
Q  223 tcaggacaatattttcaatctcttctccgttccttctagcctcatcaacactgtgctgcacatgatcttttgatccttcgagcttttggacctcaatttt 322  Q
     | ||||||  ||||||||||||||||| ||  |||||||||| |||||  || | ||||||  |||||||| |||||| ||||||||||| ||| |||     
T  30187161 cctggacaaacttttcaatctcttctccattatttctagcctcgtcaactttgcgttgcacactatcttttgttccttctagcttttggacatcagtttc 30187260  T
Q  323 catcctttcaaggtttcctttgtagtatagtatgtaaccaaattgacgaccaataggtacaaccgtatactcagaaatcttagcagcaactgaaataata 422  Q
    |||||||| ||||||  | |||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||    
T  30187261 catcctttgaaggttgtccttgtagtagagtatgtaaccaaattgacgaccaataggtacaaccatatactcagcaattttagcagcaactgaaataata 30187360  T
Q  423 acatccatggccac 436  Q
     |||||||||||||    
T  30187361 ccatccatggccac 30187374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 16 - 436
Target Start/End: Complemental strand, 30066020 - 30065600
Alignment:
Q  16 aagaagcacggtaagaaattctgtcaaattttccttctgcgagaacttcagaaatctcttgtatcatctttttgcttttcctactcagttgatgccttgt 115  Q
    |||||||||||||||| ||||||||||||||||||||| | |  ||||||||||||| |||||||||||||||  | ||| | ||||| |||||||||||    
T  30066020 aagaagcacggtaagatattctgtcaaattttccttctactatgacttcagaaatcttttgtatcatctttttaatcttcttgctcagctgatgccttgt 30065921  T
Q  116 gcacagattgggaaaatatctcatagaacattgagattttgcatggccctgagtgtcaataagtttctttacctcagcaacagtgttgtccacaccgttc 215  Q
    || |||||||||||| | || |||||||| ||||  | ||||| || | | | ||||||| ||||| ||| |||| |||| ||||||||||||   | ||    
T  30065920 gctcagattgggaaagtttcgcatagaacgttgacctattgcaaggtcttcattgtcaattagtttatttgcctccgcaaaagtgttgtccactttgctc 30065821  T
Q  216 agccacttcaggacaatattttcaatctcttctccgttccttctagcctcatcaacactgtgctgcacatgatcttttgatccttcgagcttttggacct 315  Q
    | ||| ||  |||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||   | ||||  ||| || | ||||||||| |    
T  30065820 atccaattttggacaacattttcaatctcttctccgttccttctagcctcatcaacagtgtgttgcacactgttttttattccctccatcttttggacat 30065721  T
Q  316 caattttcatcctttcaaggtttcctttgtagtatagtatgtaaccaaattgacgaccaataggtacaaccgtatactcagaaatcttagcagcaactga 415  Q
    || |||||||| ||| |||||   | |||||||| |||||||||| ||||||||| ||||||||| ||||| ||   |||| ||  |||||||||| |||    
T  30065720 cagttttcatctttttaaggtagtccttgtagtagagtatgtaacgaaattgacgtccaataggtgcaaccataatttcagcaaatttagcagcaattga 30065621  T
Q  416 aataataacatccatggccac 436  Q
    |||||||||||||||||||||    
T  30065620 aataataacatccatggccac 30065600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 16 - 436
Target Start/End: Complemental strand, 30009523 - 30009103
Alignment:
Q  16 aagaagcacggtaagaaattctgtcaaattttccttctgcgagaacttcagaaatctcttgtatcatctttttgcttttcctactcagttgatgccttgt 115  Q
    |||||||||||||||| ||||||||||||||||||||| | |  ||||||||||||| |||||||||||||||  | ||| | ||||| |||||||||||    
T  30009523 aagaagcacggtaagatattctgtcaaattttccttctactatgacttcagaaatcttttgtatcatctttttaatcttcttgctcagctgatgccttgt 30009424  T
Q  116 gcacagattgggaaaatatctcatagaacattgagattttgcatggccctgagtgtcaataagtttctttacctcagcaacagtgttgtccacaccgttc 215  Q
    || |||||||||||| | || |||||||| ||||  | ||||| || | | | ||||||| ||||| ||| |||| |||| ||||||||||||   | ||    
T  30009423 gcgcagattgggaaagtttcgcatagaacgttgacctattgcaaggtcttcattgtcaattagtttatttgcctccgcaaaagtgttgtccactttgctc 30009324  T
Q  216 agccacttcaggacaatattttcaatctcttctccgttccttctagcctcatcaacactgtgctgcacatgatcttttgatccttcgagcttttggacct 315  Q
    | ||| ||  |||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||   | |||   ||| || | ||| ||||| |    
T  30009323 atccaattttggacaacattttcaatctcttctccgttccttctagcctcatcaacagtgtgttgcacactgtttttaattccctccaacttctggacat 30009224  T
Q  316 caattttcatcctttcaaggtttcctttgtagtatagtatgtaaccaaattgacgaccaataggtacaaccgtatactcagaaatcttagcagcaactga 415  Q
    || |||||||| ||| |||||   | |||||||| |||||||||| ||||||||| ||||||||| ||||| ||   |||| ||| |||||||||| |||    
T  30009223 cagttttcatctttttaaggtagtccttgtagtagagtatgtaacgaaattgacgtccaataggtgcaaccataatttcagcaattttagcagcaattga 30009124  T
Q  416 aataataacatccatggccac 436  Q
    |||||||||||||||||||||    
T  30009123 aataataacatccatggccac 30009103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 13 - 389
Target Start/End: Original strand, 30039890 - 30040266
Alignment:
Q  13 gagaagaagcacggtaagaaattctgtcaaattttccttctgcgagaacttcagaaatctcttgtatcatctttttgcttttcctactcagttgatgcct 112  Q
    |||||| |||||||||||||||| | |||||  |||||||||| |  | ||||||||||| ||| ||||||||| |  | |||||||| || || |||||    
T  30039890 gagaagcagcacggtaagaaattttatcaaaacttccttctgctacgagttcagaaatcttttgcatcatctttatcatcttcctacttagctggtgcct 30039989  T
Q  113 tgtgcacagattgggaaaatatctcatagaacattgagattttgcatggccctgagtgtcaataagtttctttacctcagcaacagtgttgtccacaccg 212  Q
    |||||||| ||||||||||| ||||||||||||||||| |||||||||||| | | ||||||||||||  ||| |||| |||||||||||||||||   |    
T  30039990 tgtgcacaaattgggaaaatgtctcatagaacattgagcttttgcatggccttcactgtcaataagttcatttgcctccgcaacagtgttgtccactgtg 30040089  T
Q  213 ttcagccacttcaggacaatattttcaatctcttctccgttccttctagcctcatcaacactgtgctgcacatgatcttttgatccttcgagcttttgga 312  Q
    |||| ||| ||| ||||||||||||||||||||||||||||||||||  ||||||||||| |||| |||| |   ||||||  ||| || |    |||||    
T  30040090 ttcaaccaattctggacaatattttcaatctcttctccgttccttctgacctcatcaacattgtgttgcaaaatgtcttttattccctccacacgttgga 30040189  T
Q  313 cctcaattttcatcctttcaaggtttcctttgtagtatagtatgtaaccaaattgacgaccaataggtacaaccgta 389  Q
    | ||| || |||||||   |||||| || ||||| || |||||||||||||||||||||||||||| | ||||||||    
T  30040190 catcagttgtcatcctggtaaggttgcccttgtaataaagtatgtaaccaaattgacgaccaatagcttcaaccgta 30040266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 13 - 389
Target Start/End: Original strand, 30109368 - 30109744
Alignment:
Q  13 gagaagaagcacggtaagaaattctgtcaaattttccttctgcgagaacttcagaaatctcttgtatcatctttttgcttttcctactcagttgatgcct 112  Q
    |||||| |||||||||||||||| | |||||  |||||||||| |  | ||||||||||| ||| ||||||||| |  | |||||||| || || |||||    
T  30109368 gagaagcagcacggtaagaaattttatcaaaacttccttctgctacgagttcagaaatcttttgcatcatctttatcatcttcctacttagctggtgcct 30109467  T
Q  113 tgtgcacagattgggaaaatatctcatagaacattgagattttgcatggccctgagtgtcaataagtttctttacctcagcaacagtgttgtccacaccg 212  Q
    |||||||| ||||||||||| ||||||||||||||||| |||||||||||| | | ||||||||||||  ||| |||| |||||||||||||||||   |    
T  30109468 tgtgcacaaattgggaaaatgtctcatagaacattgagcttttgcatggccttcactgtcaataagttcatttgcctccgcaacagtgttgtccactgtg 30109567  T
Q  213 ttcagccacttcaggacaatattttcaatctcttctccgttccttctagcctcatcaacactgtgctgcacatgatcttttgatccttcgagcttttgga 312  Q
    |||| ||| ||| ||||||||||||||||||||||||||||||||||  ||||||||||| |||| |||| |   ||||||  ||| || |    |||||    
T  30109568 ttcaaccaattctggacaatattttcaatctcttctccgttccttctgacctcatcaacattgtgttgcaaaatgtcttttattccctccacacgttgga 30109667  T
Q  313 cctcaattttcatcctttcaaggtttcctttgtagtatagtatgtaaccaaattgacgaccaataggtacaaccgta 389  Q
    | ||| || |||||||   |||||| || ||||| || |||||||||||||||||||||||||||| | ||||||||    
T  30109668 catcagttgtcatcctggtaaggttgcccttgtaataaagtatgtaaccaaattgacgaccaatagcttcaaccgta 30109744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 13 - 389
Target Start/End: Original strand, 30234028 - 30234404
Alignment:
Q  13 gagaagaagcacggtaagaaattctgtcaaattttccttctgcgagaacttcagaaatctcttgtatcatctttttgcttttcctactcagttgatgcct 112  Q
    |||||| |||||||||||||||| | |||||  |||||||||| |  | ||||||||||| ||| ||||||||| |  | |||||||| || || |||||    
T  30234028 gagaagcagcacggtaagaaattttatcaaaacttccttctgctacgagttcagaaatcttttgcatcatctttatcatcttcctacttagctggtgcct 30234127  T
Q  113 tgtgcacagattgggaaaatatctcatagaacattgagattttgcatggccctgagtgtcaataagtttctttacctcagcaacagtgttgtccacaccg 212  Q
    |||||||| ||||||||||| ||||||||||||||||| |||||||||||| | | ||||||||||||  ||| |||| |||||||||||||||||   |    
T  30234128 tgtgcacaaattgggaaaatgtctcatagaacattgagcttttgcatggccttcactgtcaataagttcatttgcctccgcaacagtgttgtccactgtg 30234227  T
Q  213 ttcagccacttcaggacaatattttcaatctcttctccgttccttctagcctcatcaacactgtgctgcacatgatcttttgatccttcgagcttttgga 312  Q
    |||| ||| ||| ||||||||||||||||||||||||||||||||||  ||||||||||| |||| |||| |   ||||||  ||| || |    |||||    
T  30234228 ttcaaccaattctggacaatattttcaatctcttctccgttccttctgacctcatcaacattgtgttgcaaaatgtcttttattccctccacacgttgga 30234327  T
Q  313 cctcaattttcatcctttcaaggtttcctttgtagtatagtatgtaaccaaattgacgaccaataggtacaaccgta 389  Q
    | ||| || |||||||   |||||| || ||||| || |||||||||||||||||||||||||||| | ||||||||    
T  30234328 catcagttgtcatcctggtaaggttgcccttgtaataaagtatgtaaccaaattgacgaccaatagcttcaaccgta 30234404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 13 - 282
Target Start/End: Complemental strand, 30079211 - 30078942
Alignment:
Q  13 gagaagaagcacggtaagaaattctgtcaaattttccttctgcgagaacttcagaaatctcttgtatcatctttttgcttttcctactcagttgatgcct 112  Q
    |||||| ||| |||||||||||| | |||||  |||||||||| |  | ||||||||||  ||| ||||||||| |  | |||||||| || || |||||    
T  30079211 gagaagcagcgcggtaagaaattttatcaaaacttccttctgctacgatttcagaaatcgtttgcatcatctttatcatcttcctacttagctggtgcct 30079112  T
Q  113 tgtgcacagattgggaaaatatctcatagaacattgagattttgcatggccctgagtgtcaataagtttctttacctcagcaacagtgttgtccacaccg 212  Q
    |||||||| ||||||||||| ||||||||||||||||| |||||||||||| | | ||||||||||||  ||| |||| |||||||||||||||||   |    
T  30079111 tgtgcacaaattgggaaaatgtctcatagaacattgagcttttgcatggccttcactgtcaataagttcatttgcctccgcaacagtgttgtccactgtg 30079012  T
Q  213 ttcagccacttcaggacaatattttcaatctcttctccgttccttctagcctcatcaacactgtgctgca 282  Q
    |||| ||| ||| |||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||    
T  30079011 ttcaaccaattctggacaatattttcaatctcttctccgttccttctggcctcatcaacattgtgttgca 30078942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 24 - 433
Target Start/End: Complemental strand, 30277324 - 30276915
Alignment:
Q  24 cggtaagaaattctgtcaaattttccttctgcgagaacttcagaaatctcttgtatcatctttttgcttttcctactcagttgatgccttgtgcacagat 123  Q
    |||||||||||||| ||||||||||||||| | || || |||||||||||||||||   ||||||| | ||| | || ||||| ||||||||| ||||||    
T  30277324 cggtaagaaattctctcaaattttccttcttctaggacatcagaaatctcttgtattgcctttttggtcttcttgctaagttggtgccttgtgtacagat 30277225  T
Q  124 tgggaaaatatctcatagaacattgagattttgcatggccctgagtgtcaataagtttctttacctcagcaacagtgttgtccacaccgttcagccactt 223  Q
    | || || | || ||| |||||||||| |||||||||||| |  |||||||||||||||||  |||||||||  |||| ||  ||   ||||||||| ||    
T  30277224 tagggaagtgtcccatggaacattgagcttttgcatggccttctgtgtcaataagtttcttggcctcagcaatggtgtagtttactttgttcagccagtt 30277125  T
Q  224 caggacaatattttcaatctcttctccgttccttctagcctcatcaacactgtgctgcacatgatcttttgatccttcgagcttttggacctcaattttc 323  Q
    | |||| |||||||||||||||||||| |||| |||||||||||||||| |||| ||||||   |||||| |||| || || |||||||   |   | ||    
T  30277124 ctggacgatattttcaatctcttctccattccgtctagcctcatcaacagtgtgttgcacactgtcttttaatccctccagattttggatagcggctgtc 30277025  T
Q  324 atcctttcaaggtttcctttgtagtatagtatgtaaccaaattgacgaccaataggtacaaccgtatactcagaaatcttagcagcaactgaaataataa 423  Q
    | ||||  |||||| || ||||| |||| |||||||||||||||  | ||||||||| |||||||| | |||||||| ||||| |||| |||||| |||     
T  30277024 acccttaaaaggttgcccttgtaatatattatgtaaccaaattgttgtccaataggtgcaaccgtaaattcagaaattttagctgcaattgaaatgatag 30276925  T
Q  424 catccatggc 433  Q
     |||||||||    
T  30276924 aatccatggc 30276915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 13 - 378
Target Start/End: Complemental strand, 30020805 - 30020440
Alignment:
Q  13 gagaagaagcacggtaagaaattctgtcaaattttccttctgcgagaacttcagaaatctcttgtatcatctttttgcttttcctactcagttgatgcct 112  Q
    |||||| ||||||||| |||||| | |||||  ||| |||||| |  | ||||||||||  ||| ||||| ||| |  | |||||||| || || |||||    
T  30020805 gagaagcagcacggtatgaaattttatcaaaacttctttctgctacgagttcagaaatcgtttgcatcatgtttgtcatcttcctacttagctggtgcct 30020706  T
Q  113 tgtgcacagattgggaaaatatctcatagaacattgagattttgcatggccctgagtgtcaataagtttctttacctcagcaacagtgttgtccacaccg 212  Q
    |||||||| ||||||||||| ||||||||||||||||| |||||||||||| | | ||||||||| ||  ||| | || |||||||||||||||||   |    
T  30020705 tgtgcacaaattgggaaaatgtctcatagaacattgagcttttgcatggccttcactgtcaataatttcatttgcatctgcaacagtgttgtccactgtg 30020606  T
Q  213 ttcagccacttcaggacaatattttcaatctcttctccgttccttctagcctcatcaacactgtgctgcacatgatcttttgatccttcgagcttttgga 312  Q
    |||| ||| ||| |||||||||||||||||||||||||||||||||| |||||||||||| |||| |||| |   ||||||  ||| || |  | |||||    
T  30020605 ttcaaccaattctggacaatattttcaatctcttctccgttccttctggcctcatcaacattgtgttgcaaaatgtcttttattccctccaaatgttgga 30020506  T
Q  313 cctcaattttcatcctttcaaggtttcctttgtagtatagtatgtaaccaaattgacgaccaatag 378  Q
    | ||| || ||||| |   |||||| || ||||| || ||||||||||||||||||||||||||||    
T  30020505 catcagttgtcatcttggtaaggttgcccttgtaatagagtatgtaaccaaattgacgaccaatag 30020440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 13 - 378
Target Start/End: Original strand, 30121067 - 30121432
Alignment:
Q  13 gagaagaagcacggtaagaaattctgtcaaattttccttctgcgagaacttcagaaatctcttgtatcatctttttgcttttcctactcagttgatgcct 112  Q
    |||||| ||||||||| |||||| | |||||  ||| |||||| |  | ||||||||||  ||| ||||| ||| |  | |||||||| || || |||||    
T  30121067 gagaagcagcacggtatgaaattttatcaaaacttctttctgctacgagttcagaaatcgtttgcatcatgtttgtcatcttcctacttagctggtgcct 30121166  T
Q  113 tgtgcacagattgggaaaatatctcatagaacattgagattttgcatggccctgagtgtcaataagtttctttacctcagcaacagtgttgtccacaccg 212  Q
    |||||||| ||||||||||| ||||||||||||||||| |||||||||||| | | ||||||||| ||  ||| | || |||||||||||||||||   |    
T  30121167 tgtgcacaaattgggaaaatgtctcatagaacattgagcttttgcatggccttcactgtcaataatttcatttgcatctgcaacagtgttgtccactgtg 30121266  T
Q  213 ttcagccacttcaggacaatattttcaatctcttctccgttccttctagcctcatcaacactgtgctgcacatgatcttttgatccttcgagcttttgga 312  Q
    |||| ||| ||| |||||||||||||||||||||||||||||||||| |||||||||||| |||| |||| |   ||||||  ||| || |  | |||||    
T  30121267 ttcaaccaattctggacaatattttcaatctcttctccgttccttctggcctcatcaacattgtgttgcaaaatgtcttttattccctccaaatgttgga 30121366  T
Q  313 cctcaattttcatcctttcaaggtttcctttgtagtatagtatgtaaccaaattgacgaccaatag 378  Q
    | ||| || ||||| |   |||||| || ||||| || ||||||||||||||||||||||||||||    
T  30121367 catcagttgtcatcttggtaaggttgcccttgtaatagagtatgtaaccaaattgacgaccaatag 30121432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 13 - 378
Target Start/End: Original strand, 30102838 - 30103203
Alignment:
Q  13 gagaagaagcacggtaagaaattctgtcaaattttccttctgcgagaacttcagaaatctcttgtatcatctttttgcttttcctactcagttgatgcct 112  Q
    |||||| ||||||||| |||||| | |||||  ||| |||||| |  | ||||||||||  ||| ||||| ||| |  | |||||||| || || |||||    
T  30102838 gagaagcagcacggtatgaaattttatcaaaacttctttctgctacgagttcagaaatcgtttgcatcatgtttgtcatcttcctacttagctggtgcct 30102937  T
Q  113 tgtgcacagattgggaaaatatctcatagaacattgagattttgcatggccctgagtgtcaataagtttctttacctcagcaacagtgttgtccacaccg 212  Q
    |||||||| ||||||||||| ||||||||||||||||| |||||||||||| | | ||||||||| ||  ||| | |||||||||||| |||||||   |    
T  30102938 tgtgcacaaattgggaaaatgtctcatagaacattgagcttttgcatggccttcactgtcaataaattcatttgcatcagcaacagtgatgtccactgtg 30103037  T
Q  213 ttcagccacttcaggacaatattttcaatctcttctccgttccttctagcctcatcaacactgtgctgcacatgatcttttgatccttcgagcttttgga 312  Q
    |||| ||| ||| |||||||||||||||||||||| ||||||||||| |||||||||||| |||| |||| |   ||||||  ||| || |  | |||||    
T  30103038 ttcaaccaattctggacaatattttcaatctcttcaccgttccttctggcctcatcaacattgtgttgcaaaatgtcttttattccctccaaatgttgga 30103137  T
Q  313 cctcaattttcatcctttcaaggtttcctttgtagtatagtatgtaaccaaattgacgaccaatag 378  Q
    | ||| || ||||| |   |||||| || ||||| || ||||||||||||||||||||||||||||    
T  30103138 catcagttgtcatcttggtaaggttgcccttgtaatagagtatgtaaccaaattgacgaccaatag 30103203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 13 - 282
Target Start/End: Original strand, 30136084 - 30136353
Alignment:
Q  13 gagaagaagcacggtaagaaattctgtcaaattttccttctgcgagaacttcagaaatctcttgtatcatctttttgcttttcctactcagttgatgcct 112  Q
    |||||| ||||||||| |||||| | |||||  |||||| ||| |  | ||||||||||  ||| ||||||||| |  | ||| |||| || || |||||    
T  30136084 gagaagcagcacggtaggaaattttatcaaaacttccttttgctacgatttcagaaatcgtttgcatcatctttatcatcttcttacttagctggtgcct 30136183  T
Q  113 tgtgcacagattgggaaaatatctcatagaacattgagattttgcatggccctgagtgtcaataagtttctttacctcagcaacagtgttgtccacaccg 212  Q
    |||||||| ||||||||||| ||||||||||||||||| |||||||||||| | | ||||||||| ||  ||| | || |||||||||||||||||   |    
T  30136184 tgtgcacaaattgggaaaatgtctcatagaacattgagcttttgcatggccttcactgtcaataatttcatttgcatctgcaacagtgttgtccactgtg 30136283  T
Q  213 ttcagccacttcaggacaatattttcaatctcttctccgttccttctagcctcatcaacactgtgctgca 282  Q
    |||| ||| ||| |||||||||||||||||||||| ||||||||||| |||||||||||| |||| ||||    
T  30136284 ttcaaccaattctggacaatattttcaatctcttccccgttccttctggcctcatcaacattgtgttgca 30136353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 284
Target Start/End: Complemental strand, 31803263 - 31803001
Alignment:
Q  22 cacggtaagaaattctgtcaaattttccttctgcgagaacttcagaaatctcttgtatcatctttttgcttttcctactcagttgatgccttgtgcacag 121  Q
    |||||||||||||||  ||||||| ||||||||| |  ||||| ||||| ||||| |||||||||    | ||||| ||||   | |||||| ||  | |    
T  31803263 cacggtaagaaattcgttcaaattctccttctgctatgacttcggaaatatcttgaatcatctttgccatgttcctgctcaaccggtgccttttgatcgg 31803164  T
Q  122 attgggaaaatatctcatagaacattgagattttgcatggccctgagtgtcaataagtttctttacctcagcaacagtgttgtccacaccgttcagccac 221  Q
    ||||||| | | || ||||||||| |||   || |||||| | |  ||||||| |||||| ||| | |||||||| |||||| |  |   |||||||||     
T  31803163 attgggacagtgtcccatagaacactgaaccttcgcatggtcttcggtgtcaagaagtttgtttgcatcagcaacggtgttggcagctttgttcagccaa 31803064  T
Q  222 ttcaggacaatattttcaatctcttctccgttccttctagcctcatcaacactgtgctgcaca 284  Q
    ||  |||||| ||||||||| | ||||||||||||| |||||||||||||  |||| ||||||    
T  31803063 ttgtggacaagattttcaattttttctccgttccttatagcctcatcaactgtgtgttgcaca 31803001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 37 - 142
Target Start/End: Complemental strand, 30271370 - 30271265
Alignment:
Q  37 tgtcaaattttccttctgcgagaacttcagaaatctcttgtatcatctttttgcttttcctactcagttgatgccttgtgcacagattgggaaaatatct 136  Q
    ||||||||||||||||||| |  || ||||||||||||| |  |||||||||  | |||||    ||||||||||||||||||| || |||||||||||     
T  30271370 tgtcaaattttccttctgctattacctcagaaatctcttctgacatcttttttatcttcctgtctagttgatgccttgtgcacaaatagggaaaatatcc 30271271  T
Q  137 cataga 142  Q
    ||||||    
T  30271270 cataga 30271265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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