View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12736_low_5 (Length: 283)
Name: NF12736_low_5
Description: NF12736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12736_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 44853543 - 44853282
Alignment:
| Q |
1 |
gaatatggaccaaaatgatttgttataaacgcgttaaaataaaatcgacaggcctgctaaatccaatatacgcaacccggcccattgtaaactacatgat |
100 |
Q |
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|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
44853543 |
gaatatggaccaaaataattttttataaacgcgttaaaataaaatcgacaggcctgctaaatccaatatacgcaacccgacccattgtaaactacatgac |
44853444 |
T |
|
| Q |
101 |
tcgattctaaccctagaaaccacggcaccaacggcgcggataaatatcattttcctttttatcttttaccgnnnnnnntaatgataaaataccattttct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
44853443 |
tcgattctaaccctagaaaccacggcaccaacggcgcg-----------ttttcctttttatcttttacccaaaaaaataatgataaaataccattttct |
44853355 |
T |
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| Q |
201 |
ttttcatcttttaccacaaaaatcgtactataggacaaaatattaaatcagatttgaacaaaatttgatgtcc |
273 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
44853354 |
ttttcatcttttaccataaaaatcgtactataggacaaaatattaaatcagatttgaacaaaatttgaagtcc |
44853282 |
T |
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