View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12736_low_7 (Length: 241)
Name: NF12736_low_7
Description: NF12736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12736_low_7 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 36192354 - 36192581
Alignment:
| Q |
19 |
attgttaacataagagactatataaacgacgtgttataatttaaatgatgtaattgttaaactattttgatagcactaactatttcaacgatcaatttgc |
118 |
Q |
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| T |
36192354 |
attgttaacataagagactatataaacgacgtgttataatttaaatgatgtaattgttaaactattttgatagcactaactatttcaacgatcaatttgc |
36192453 |
T |
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| Q |
119 |
ttatttgctctaaatttgtacctttactttcacgtccaaatcaacgttaagactttgtacccnnnnnnnntaatacacaaca-----ttaacacgagaga |
213 |
Q |
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| T |
36192454 |
ttatttgctctaaatttttacctttactttcacgtccaaaacaacattaagactttgtacccaaaaaaaaaaatacacaacattaagttaagacgagaga |
36192553 |
T |
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| Q |
214 |
aagagtgtatacgaacatttgccaaagc |
241 |
Q |
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| T |
36192554 |
aagagtgtatacgaacatttcccaaagc |
36192581 |
T |
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