View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12737_high_18 (Length: 236)

Name: NF12737_high_18
Description: NF12737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12737_high_18
NF12737_high_18
[»] chr3 (2 HSPs)
chr3 (1-232)||(10172-10403)
chr3 (151-208)||(13836653-13836710)
[»] chr6 (4 HSPs)
chr6 (151-232)||(1639268-1639349)
chr6 (151-208)||(1584451-1584508)
chr6 (151-204)||(1590459-1590512)
chr6 (152-232)||(23621050-23621129)
[»] chr7 (7 HSPs)
chr7 (151-208)||(15731653-15731710)
chr7 (155-208)||(7507350-7507403)
chr7 (74-132)||(11309588-11309646)
chr7 (151-204)||(13849731-13849784)
chr7 (151-208)||(16573415-16573472)
chr7 (151-208)||(16592190-16592247)
chr7 (151-204)||(15725649-15725702)
[»] chr2 (6 HSPs)
chr2 (151-232)||(20353256-20353337)
chr2 (151-208)||(40261454-40261511)
chr2 (151-208)||(21903338-21903395)
chr2 (159-208)||(23085573-23085622)
chr2 (154-208)||(23375091-23375145)
chr2 (151-207)||(24160440-24160496)
[»] chr8 (4 HSPs)
chr8 (151-208)||(22434448-22434505)
chr8 (151-208)||(43112199-43112256)
chr8 (151-232)||(20385355-20385437)
chr8 (151-190)||(15003925-15003964)
[»] scaffold0117 (1 HSPs)
scaffold0117 (152-232)||(33833-33913)
[»] chr5 (2 HSPs)
chr5 (151-206)||(21559272-21559327)
chr5 (151-208)||(21980865-21980922)
[»] scaffold0364 (1 HSPs)
scaffold0364 (151-204)||(7284-7337)
[»] scaffold0034 (1 HSPs)
scaffold0034 (157-208)||(34733-34784)
[»] scaffold0556 (1 HSPs)
scaffold0556 (151-232)||(9803-9884)
[»] scaffold0371 (1 HSPs)
scaffold0371 (159-208)||(5547-5596)
[»] scaffold0149 (1 HSPs)
scaffold0149 (159-208)||(27879-27928)
[»] chr4 (5 HSPs)
chr4 (151-208)||(13881579-13881636)
chr4 (151-207)||(16371545-16371601)
chr4 (151-206)||(15416701-15416756)
chr4 (157-208)||(33662400-33662451)
chr4 (151-208)||(13877951-13878008)
[»] chr1 (3 HSPs)
chr1 (151-232)||(20901280-20901361)
chr1 (157-208)||(28204555-28204606)
chr1 (74-132)||(10813212-10813270)
[»] scaffold0126 (1 HSPs)
scaffold0126 (165-208)||(5947-5990)


Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 10403 - 10172
Alignment:
Q  1 cgtgtatgctgtttggttattcctttgggttaaattaataaatattcatgactgtattattttactaggaacgtgattaattattgattaatgggatgtg 100  Q
    |||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10403 cgtgcatgctgtttggttgttcctttgggttaaattaataactattcatgactgtattattttactaggaacgtgattaattattgattaatgggatgtg 10304  T
Q  101 tatatatgattatatgaatatgcattatgttggtgaagttcgtcgtttatgttgttgtgtcacaagttgaccatgttgaggtgtaagtcacatctaaata 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10303 tatatatgattatatgaatatgcattatgttggtgaagttcgtcgtgtatgttgttgtgtcacaagttgaccatgttgaggtgtaagtcacatctaaata 10204  T
Q  201 tgcactgtcatgtaattgatgttgatgtccat 232  Q
    |||||||||||||||||||||||| |||||||    
T  10203 tgcactgtcatgtaattgatgttgttgtccat 10172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 151 - 208
Target Start/End: Complemental strand, 13836710 - 13836653
Alignment:
Q  151 gttgttgtgtcacaagttgaccatgttgaggtgtaagtcacatctaaatatgcactgt 208  Q
    |||||||||||||||||||||||||||||| |||| |||| || ||||||||||||||    
T  13836710 gttgttgtgtcacaagttgaccatgttgagatgtacgtcatatttaaatatgcactgt 13836653  T

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Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 151 - 232
Target Start/End: Complemental strand, 1639349 - 1639268
Alignment:
Q  151 gttgttgtgtcacaagttgaccatgttgaggtgtaagtcacatctaaatatgcactgtcatgtaattgatgttgatgtccat 232  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||| | ||||||| |||||||    
T  1639349 gttgttgtgtcacaagttgaccatgttgaggtgtaagtcatatttaaatatgcactgttatgtagtagatgttgttgtccat 1639268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 151 - 208
Target Start/End: Complemental strand, 1584508 - 1584451
Alignment:
Q  151 gttgttgtgtcacaagttgaccatgttgaggtgtaagtcacatctaaatatgcactgt 208  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  1584508 gttgttgtgtcacaagttgaccatgttgaggtgtaagtcatatttaaatatgcactgt 1584451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 204
Target Start/End: Original strand, 1590459 - 1590512
Alignment:
Q  151 gttgttgtgtcacaagttgaccatgttgaggtgtaagtcacatctaaatatgca 204  Q
    |||||||||||||||| |||| ||||||| |||||||||| || ||||||||||    
T  1590459 gttgttgtgtcacaagatgacaatgttgaagtgtaagtcatatttaaatatgca 1590512  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 232
Target Start/End: Original strand, 23621050 - 23621129
Alignment:
Q  152 ttgttgtgtcacaagttgaccatgttgaggtgtaagtcacatctaaatatgcactgtcatgtaattgatgttgatgtccat 232  Q
    |||||||||||||| ||||| |||||||||| |||||||    ||||||||||||||  |||| | ||||||| |||||||    
T  23621050 ttgttgtgtcacaaattgacgatgttgaggt-taagtcaggaataaatatgcactgttgtgtagtagatgttgttgtccat 23621129  T

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Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 151 - 208
Target Start/End: Original strand, 15731653 - 15731710
Alignment:
Q  151 gttgttgtgtcacaagttgaccatgttgaggtgtaagtcacatctaaatatgcactgt 208  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  15731653 gttgttgtgtcacaagttgaccatgttgaggtgtaagtcatatttaaatatgcactgt 15731710  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 7507350 - 7507403
Alignment:
Q  155 ttgtgtcacaagttgaccatgttgaggtgtaagtcacatctaaatatgcactgt 208  Q
    |||||||||||||||| ||||||||||||||||||| || ||||||||||||||    
T  7507350 ttgtgtcacaagttgatcatgttgaggtgtaagtcatatttaaatatgcactgt 7507403  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 74 - 132
Target Start/End: Complemental strand, 11309646 - 11309588
Alignment:
Q  74 tgattaattattgattaatgggatgtgtatatatgattatatgaatatgcattatgttg 132  Q
    ||||||||||| |||||||| |||||||||||||||| ||||||||||  |||||||||    
T  11309646 tgattaattatcgattaatgagatgtgtatatatgatcatatgaatatatattatgttg 11309588  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 204
Target Start/End: Original strand, 13849731 - 13849784
Alignment:
Q  151 gttgttgtgtcacaagttgaccatgttgaggtgtaagtcacatctaaatatgca 204  Q
    ||||||||||||| ||||||||||||||||||||||| || || ||||||||||    
T  13849731 gttgttgtgtcacgagttgaccatgttgaggtgtaaggcatatttaaatatgca 13849784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 208
Target Start/End: Complemental strand, 16573472 - 16573415
Alignment:
Q  151 gttgttgtgtcacaagttgaccatgttgaggtgtaagtcacatctaaatatgcactgt 208  Q
    ||||||| ||||| ||||||||||||||||||||||| || || ||||||||||||||    
T  16573472 gttgttgcgtcacgagttgaccatgttgaggtgtaagacatatttaaatatgcactgt 16573415  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 208
Target Start/End: Original strand, 16592190 - 16592247
Alignment:
Q  151 gttgttgtgtcacaagttgaccatgttgaggtgtaagtcacatctaaatatgcactgt 208  Q
    ||||||| ||||| ||||||||||||||||||||||| || || ||||||||||||||    
T  16592190 gttgttgcgtcacgagttgaccatgttgaggtgtaagacatatttaaatatgcactgt 16592247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 15725702 - 15725649
Alignment:
Q  151 gttgttgtgtcacaagttgaccatgttgaggtgtaagtcacatctaaatatgca 204  Q
    |||||||||||||||| |||| ||||||| |||||||||| || ||||||||||    
T  15725702 gttgttgtgtcacaagatgacaatgttgaagtgtaagtcatatttaaatatgca 15725649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 151 - 232
Target Start/End: Original strand, 20353256 - 20353337
Alignment:
Q  151 gttgttgtgtcacaagttgaccatgttgaggtgtaagtcacatctaaatatgcactgtcatgtaattgatgttgatgtccat 232  Q
    |||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||  |||| | ||||||| |||||||    
T  20353256 gttgttgtgtcacaagttgaccatgttgaggtgtaagtcatatttaagtatgcactgttgtgtagtagatgttgttgtccat 20353337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 151 - 208
Target Start/End: Complemental strand, 40261511 - 40261454
Alignment:
Q  151 gttgttgtgtcacaagttgaccatgttgaggtgtaagtcacatctaaatatgcactgt 208  Q
    |||||||||||||||||||||||||||||| |||| |||| || ||||||||||||||    
T  40261511 gttgttgtgtcacaagttgaccatgttgagatgtacgtcatatttaaatatgcactgt 40261454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 208
Target Start/End: Complemental strand, 21903395 - 21903338
Alignment:
Q  151 gttgttgtgtcacaagttgaccatgttgaggtgtaagtcacatctaaatatgcactgt 208  Q
    |||||| ||||||||||||||||||||||| |||| |||| || ||||||||||||||    
T  21903395 gttgttatgtcacaagttgaccatgttgagatgtacgtcatatttaaatatgcactgt 21903338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 23085622 - 23085573
Alignment:
Q  159 gtcacaagttgaccatgttgaggtgtaagtcacatctaaatatgcactgt 208  Q
    |||||||||||||||||||||| |||| |||| || ||||||||||||||    
T  23085622 gtcacaagttgaccatgttgagatgtacgtcatatttaaatatgcactgt 23085573  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 23375145 - 23375091
Alignment:
Q  154 gttgtgtcacaagttgaccatgttgaggtgtaagtcacatctaaatatgcactgt 208  Q
    |||||||||  ||||||||||||| ||||||||| || || ||||||||||||||    
T  23375145 gttgtgtcatgagttgaccatgttaaggtgtaagacatatttaaatatgcactgt 23375091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 207
Target Start/End: Complemental strand, 24160496 - 24160440
Alignment:
Q  151 gttgttgtgtcacaagttgaccatgttgaggtgtaagtcacatctaaatatgcactg 207  Q
    |||||| |||||  ||||||||||||||| |||||||||| || || ||||||||||    
T  24160496 gttgttatgtcattagttgaccatgttgatgtgtaagtcatatttatatatgcactg 24160440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 151 - 208
Target Start/End: Original strand, 22434448 - 22434505
Alignment:
Q  151 gttgttgtgtcacaagttgaccatgttgaggtgtaagtcacatctaaatatgcactgt 208  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||| |||||    
T  22434448 gttgttgtgtcacaagttgaccatgttgaggtgtaagtcatatttaaatatgtactgt 22434505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 208
Target Start/End: Complemental strand, 43112256 - 43112199
Alignment:
Q  151 gttgttgtgtcacaagttgaccatgttgaggtgtaagtcacatctaaatatgcactgt 208  Q
    ||||||||||||| |||| |||||||||||||||||| || || ||||||||||||||    
T  43112256 gttgttgtgtcacgagttaaccatgttgaggtgtaagacatatttaaatatgcactgt 43112199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 232
Target Start/End: Complemental strand, 20385437 - 20385355
Alignment:
Q  151 gttgttgtgtcacaagttgaccatgttgaggtgtaagtcaca-tctaaatatgcactgtcatgtaattgatgttgatgtccat 232  Q
    ||||||||||||| |||||||||  ||||||||||||||| | | ||||||||||||||  |||| | ||||| |||||||||    
T  20385437 gttgttgtgtcacgagttgaccacattgaggtgtaagtcatattttaaatatgcactgttgtgtagtagatgtcgatgtccat 20385355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 190
Target Start/End: Original strand, 15003925 - 15003964
Alignment:
Q  151 gttgttgtgtcacaagttgaccatgttgaggtgtaagtca 190  Q
    ||||||||||||||| ||||| ||||||||||||||||||    
T  15003925 gttgttgtgtcacaaattgacaatgttgaggtgtaagtca 15003964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 232
Target Start/End: Complemental strand, 33913 - 33833
Alignment:
Q  152 ttgttgtgtcacaagttgaccatgttgaggtgtaagtcacatctaaatatgcactgtcatgtaattgatgttgatgtccat 232  Q
    |||||||||||||||||||| ||||||| |||||||||| || |||||||| | |||  |||| | |||||||||||||||    
T  33913 ttgttgtgtcacaagttgacaatgttgaagtgtaagtcatatttaaatatgaattgttgtgtagtagatgttgatgtccat 33833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 151 - 206
Target Start/End: Original strand, 21559272 - 21559327
Alignment:
Q  151 gttgttgtgtcacaagttgaccatgttgaggtgtaagtcacatctaaatatgcact 206  Q
    ||||||||||||||||||| |||||||||||| ||||||| || ||||||||||||    
T  21559272 gttgttgtgtcacaagttgcccatgttgaggtataagtcatatttaaatatgcact 21559327  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 208
Target Start/End: Original strand, 21980865 - 21980922
Alignment:
Q  151 gttgttgtgtcacaagttgaccatgttgaggtgtaagtcacatctaaatatgcactgt 208  Q
    |||||||| |||| |||||||||||| ||| ||||||||| || ||||||||||||||    
T  21980865 gttgttgtatcacgagttgaccatgtggagatgtaagtcatatttaaatatgcactgt 21980922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0364 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0364
Description:

Target: scaffold0364; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 7337 - 7284
Alignment:
Q  151 gttgttgtgtcacaagttgaccatgttgaggtgtaagtcacatctaaatatgca 204  Q
    ||||||||||||| |||||||||||||||||||||||||| || | ||||||||    
T  7337 gttgttgtgtcacgagttgaccatgttgaggtgtaagtcatatttcaatatgca 7284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 208
Target Start/End: Original strand, 34733 - 34784
Alignment:
Q  157 gtgtcacaagttgaccatgttgaggtgtaagtcacatctaaatatgcactgt 208  Q
    ||||||| ||||||||||||||||||||||| || || ||||||||||||||    
T  34733 gtgtcacgagttgaccatgttgaggtgtaagacatatttaaatatgcactgt 34784  T

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Target: scaffold0556 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0556
Description:

Target: scaffold0556; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 232
Target Start/End: Complemental strand, 9884 - 9803
Alignment:
Q  151 gttgttgtgtcacaagttgaccatgttgaggtgtaagtcacatctaaatatgcactgtcatgtaattgatgttgatgtccat 232  Q
    ||||||||||||||| ||||| ||||||||||||||||||    ||||||| ||||||  |||| | ||||||| |||||||    
T  9884 gttgttgtgtcacaaattgacaatgttgaggtgtaagtcatgaataaatatacactgttgtgtagtagatgttgttgtccat 9803  T

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Target: scaffold0371 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0371
Description:

Target: scaffold0371; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 5596 - 5547
Alignment:
Q  159 gtcacaagttgaccatgttgaggtgtaagtcacatctaaatatgcactgt 208  Q
    |||||||||||||||||||||| |||| |||| || ||||||||||||||    
T  5596 gtcacaagttgaccatgttgagatgtacgtcatatttaaatatgcactgt 5547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0149 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 27879 - 27928
Alignment:
Q  159 gtcacaagttgaccatgttgaggtgtaagtcacatctaaatatgcactgt 208  Q
    |||||||||||||||||||||| |||| |||| || ||||||||||||||    
T  27879 gtcacaagttgaccatgttgagatgtacgtcatatttaaatatgcactgt 27928  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 208
Target Start/End: Complemental strand, 13881636 - 13881579
Alignment:
Q  151 gttgttgtgtcacaagttgaccatgttgaggtgtaagtcacatctaaatatgcactgt 208  Q
    ||||||||||||||| ||||| ||||||||||||||||||    ||||||||||||||    
T  13881636 gttgttgtgtcacaaattgacaatgttgaggtgtaagtcatgaataaatatgcactgt 13881579  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 207
Target Start/End: Original strand, 16371545 - 16371601
Alignment:
Q  151 gttgttgtgtcacaagttgaccatgttgaggtgtaagtcacatctaaatatgcactg 207  Q
    |||||||||| || ||||||||||||||| |||||||||| || || ||||||||||    
T  16371545 gttgttgtgttactagttgaccatgttgatgtgtaagtcatatttatatatgcactg 16371601  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 206
Target Start/End: Original strand, 15416701 - 15416756
Alignment:
Q  151 gttgttgtgtcacaagttgaccatgttgaggtgtaagtcacatctaaatatgcact 206  Q
    ||||||||||||  ||||||||||||||| |||||||||| || || |||||||||    
T  15416701 gttgttgtgtcattagttgaccatgttgatgtgtaagtcatatttatatatgcact 15416756  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 208
Target Start/End: Original strand, 33662400 - 33662451
Alignment:
Q  157 gtgtcacaagttgaccatgttgaggtgtaagtcacatctaaatatgcactgt 208  Q
    ||||||| |||| |||||||||||||||||| || || ||||||||||||||    
T  33662400 gtgtcacgagttaaccatgttgaggtgtaagacatatttaaatatgcactgt 33662451  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 208
Target Start/End: Complemental strand, 13878008 - 13877951
Alignment:
Q  151 gttgttgtgtcacaagttgaccatgttgaggtgtaagtcacatctaaatatgcactgt 208  Q
    |||||||||||||||  |||| ||||||||||||||||||    ||||||||||||||    
T  13878008 gttgttgtgtcacaaactgacaatgttgaggtgtaagtcatgaataaatatgcactgt 13877951  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 232
Target Start/End: Complemental strand, 20901361 - 20901280
Alignment:
Q  151 gttgttgtgtcacaagttgaccatgttgaggtgtaagtcacatctaaatatgcactgtcatgtaattgatgttgatgtccat 232  Q
    ||||||||||||||| ||||  ||||||||||||||||||    ||||||||||||||  || | | |||||||||||||||    
T  20901361 gttgttgtgtcacaaattgataatgttgaggtgtaagtcatgaataaatatgcactgttgtgaagtagatgttgatgtccat 20901280  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 208
Target Start/End: Original strand, 28204555 - 28204606
Alignment:
Q  157 gtgtcacaagttgaccatgttgaggtgtaagtcacatctaaatatgcactgt 208  Q
    ||||||| |||| |||||||||||||||||| || || ||||||||||||||    
T  28204555 gtgtcacgagttaaccatgttgaggtgtaagacatatttaaatatgcactgt 28204606  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 132
Target Start/End: Original strand, 10813212 - 10813270
Alignment:
Q  74 tgattaattattgattaatgggatgtgtatatatgattatatgaatatgcattatgttg 132  Q
    ||||||||||| |||||||| ||  |||||||||||| ||||||||||  |||||||||    
T  10813212 tgattaattatcgattaatgagacatgtatatatgatcatatgaatatatattatgttg 10813270  T

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Target: scaffold0126 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 208
Target Start/End: Complemental strand, 5990 - 5947
Alignment:
Q  165 agttgaccatgttgaggtgtaagtcacatctaaatatgcactgt 208  Q
    ||||||||||||||||||||||| || || ||||||||||||||    
T  5990 agttgaccatgttgaggtgtaagacatatttaaatatgcactgt 5947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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