View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12737_high_3 (Length: 566)

Name: NF12737_high_3
Description: NF12737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12737_high_3
NF12737_high_3
[»] chr5 (7 HSPs)
chr5 (15-550)||(10301282-10301821)
chr5 (15-252)||(10293416-10293649)
chr5 (498-549)||(10293981-10294032)
chr5 (268-311)||(10293942-10293985)
chr5 (173-231)||(29814966-29815024)
chr5 (184-234)||(6296848-6296898)
chr5 (117-166)||(1410984-1411032)
[»] scaffold0036 (1 HSPs)
scaffold0036 (331-485)||(4119-4274)
[»] chr7 (8 HSPs)
chr7 (331-486)||(32831358-32831514)
chr7 (124-235)||(32002087-32002200)
chr7 (117-182)||(46896127-46896192)
chr7 (182-238)||(33084967-33085023)
chr7 (118-161)||(13636511-13636554)
chr7 (118-161)||(13697698-13697741)
chr7 (175-236)||(12272477-12272538)
chr7 (124-232)||(42713578-42713686)
[»] chr4 (6 HSPs)
chr4 (418-488)||(28715546-28715616)
chr4 (117-235)||(29728743-29728863)
chr4 (124-187)||(25209788-25209852)
chr4 (117-166)||(28485783-28485833)
chr4 (173-235)||(38020367-38020429)
chr4 (124-160)||(40147781-40147816)
[»] chr6 (1 HSPs)
chr6 (117-169)||(35107973-35108025)
[»] chr8 (3 HSPs)
chr8 (118-188)||(32535458-32535528)
chr8 (117-232)||(30005693-30005807)
chr8 (118-158)||(26413398-26413438)
[»] chr2 (5 HSPs)
chr2 (124-232)||(16452169-16452277)
chr2 (117-191)||(10697808-10697882)
chr2 (124-236)||(14195146-14195256)
chr2 (118-160)||(43821139-43821181)
chr2 (118-190)||(2579055-2579126)
[»] chr3 (4 HSPs)
chr3 (117-160)||(20464588-20464631)
chr3 (117-157)||(20494018-20494058)
chr3 (118-158)||(53506225-53506265)
chr3 (117-158)||(223143-223184)
[»] chr1 (2 HSPs)
chr1 (127-178)||(6108848-6108899)
chr1 (117-157)||(9922202-9922242)


Alignment Details
Target: chr5 (Bit Score: 413; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 15 - 550
Target Start/End: Original strand, 10301282 - 10301821
Alignment:
Q  15 caaaggcggctaaggtttcaataaaatacaattagcatgacttattcaagtaagagttacaagataatatag-gtaatacatgatggattaaacnnnnnn 113  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||          
T  10301282 caaaggaggctaaggtttcaataaaatacaattagcatgacttattctagtaagagttacaagataatatagagtaatacatgatggattaaactttttt 10301381  T
Q  114 naataatgataaatgttagtatgttaattattatgttagatttttctccttgttagaacttgaaccttggacctccaactccctaccccttaactccaac 213  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||| |||||||||||    
T  10301382 taataatgataaatgttagtatgttaattattatgttagatttttctccttgtcagaacttgaactttggacctccagctccctaccctttaactccaac 10301481  T
Q  214 cgattgagctacccaaccccccaccaaatggaccagactgagatataacctcaaaatattctaacatagaaaatcatatatgcatgtattaaactatccg 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10301482 cgattgagctacccaaccccccaccaaatggaccagactgagatataacctcaaaatatcctaacatagaaaatcatatatgcatgtattaaactatccg 10301581  T
Q  314 ggggaaacacccgcttc-ttgtatgagtgtccatgtgtaattatttgctatttttctgatggtgccttctgtatattggcaccattgactttgtaactgt 412  Q
    | ||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10301582 gtggaaagacccgcttctttgtatgggtgtccatgtgtaattatttgctatttttctgatggtgccttctgtatattggcaccattgactttgtaactgt 10301681  T
Q  413 tttcagtgttctctttcagcacgtcttatgcgggaagaattaccgttgttagtaatgcatttcattttggcttgtt--nnnnnnnnnctatctatgctac 510  Q
    |||  |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||           |||||||||||||    
T  10301682 ttttggtgttctctttcagcacgtcttatgcgggaagaattactgttgttagtaatgcatttcattttggcttgttaaaaaaaaaaactatctatgctac 10301781  T
Q  511 aactgttccataaaaaatcacatctaatatgagatcattt 550  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  10301782 aactgttccataaaaaatcacatctaatatgagatcattt 10301821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 15 - 252
Target Start/End: Original strand, 10293416 - 10293649
Alignment:
Q  15 caaaggcggctaaggtttcaataaaatacaattagcatgacttattcaagtaagagttacaagataatatag-gtaatacatgatggattaaacnnnnnn 113  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||| ||||||||||   ||||| ||          
T  10293416 caaagggggctaaggtttcaataaaatacaattagcatgatttattgaagtaagggttacaagataatatagagtaatacatg---gattagacattttt 10293512  T
Q  114 naataatgataaatgttagtatgttaattattatgttagatttttctccttgttagaacttgaaccttggacctccaactccctaccccttaactccaac 213  Q
      ||||||| |||||||||||||||||||||||||||| |||||||||  |||  |||||||||  |||||||||||||| |||| ||||||| || |||    
T  10293513 ttataatgacaaatgttagtatgttaattattatgttaaatttttctc--tgtcggaacttgaatattggacctccaactgcctaacccttaattcaaac 10293610  T
Q  214 cgattgagctacccaaccccccaccaaatggaccagact 252  Q
    |||||||||||||||||| |||||| ||||||| |||||    
T  10293611 cgattgagctacccaacctcccacctaatggactagact 10293649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 498 - 549
Target Start/End: Original strand, 10293981 - 10294032
Alignment:
Q  498 ctatctatgctacaactgttccataaaaaatcacatctaatatgagatcatt 549  Q
    ||||||||||||||| |||||||||||||||||||||||||  |||||||||    
T  10293981 ctatctatgctacaattgttccataaaaaatcacatctaatgagagatcatt 10294032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 268 - 311
Target Start/End: Original strand, 10293942 - 10293985
Alignment:
Q  268 aatattctaacatagaaaatcatatatgcatgtattaaactatc 311  Q
    |||||||| ||||||||||||||| |||||||||||||||||||    
T  10293942 aatattctgacatagaaaatcatagatgcatgtattaaactatc 10293985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 231
Target Start/End: Original strand, 29814966 - 29815024
Alignment:
Q  173 ttgaaccttggacctccaactccctaccccttaactccaaccgattgagctacccaacc 231  Q
    |||||||| |||||||||||||| || |||||| ||| |||| ||||||||||||||||    
T  29814966 ttgaacctaggacctccaactccttatcccttagctcaaaccaattgagctacccaacc 29815024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 184 - 234
Target Start/End: Complemental strand, 6296898 - 6296848
Alignment:
Q  184 acctccaactccctaccccttaactccaaccgattgagctacccaaccccc 234  Q
    |||||||||||| || |||||| ||| |||| |||||||||||||||||||    
T  6296898 acctccaactccttatcccttagctcaaaccaattgagctacccaaccccc 6296848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 1411032 - 1410984
Alignment:
Q  117 taatgataaatgttagtatgttaattattatgttagatttttctccttgt 166  Q
    ||||| ||||||||| |||||||||||||||||||| ||||||| |||||    
T  1411032 taatggtaaatgttaatatgttaattattatgttag-tttttcttcttgt 1410984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 331 - 485
Target Start/End: Original strand, 4119 - 4274
Alignment:
Q  331 ttgtatgagtgtccatgtgtaattatttg-ctatttttctgatggtgccttctgtatattggcaccattgactttgtaactgttttcagtgttctctttc 429  Q
    ||||||||||||||| ||||||||||||  ||||||||| ||||||||||||||| |||||||| | |||||||||||| ||||||| || |||||||||    
T  4119 ttgtatgagtgtccacgtgtaattattttactatttttcggatggtgccttctgtttattggcatcgttgactttgtaattgttttcggtattctctttc 4218  T
Q  430 agcacgtcttatgcgggaagaattaccgttgttagtaatgcatttcattttggctt 485  Q
    |||||| ||| || ||| ||||||||| ||||||||| ||||||||||||||||||    
T  4219 agcacgccttgtgtggggagaattaccattgttagtattgcatttcattttggctt 4274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 4e-27; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 331 - 486
Target Start/End: Complemental strand, 32831514 - 32831358
Alignment:
Q  331 ttgtatgagtgtccatgtgtaattattt--gctatttttctgatggtgccttctgtatattggcaccattgactttgtaactgttttcagtgttctcttt 428  Q
    |||||||  |||||| ||||||||||||  |||  |||||||||||||||||||||||||||||||  ||||| |||||| ||||||| |||||||||||    
T  32831514 ttgtatggatgtccacgtgtaattatttttgctgattttctgatggtgccttctgtatattggcactgttgacattgtaattgttttcggtgttctcttt 32831415  T
Q  429 cagcacgtcttatgcgggaagaattaccgttgttagtaatgcatttcattttggcttg 486  Q
     ||||| |||| ||| || |||||||| |||||||||||   ||||||||||| ||||    
T  32831414 tagcacttcttgtgcagg-agaattactgttgttagtaacatatttcattttgccttg 32831358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 235
Target Start/End: Original strand, 32002087 - 32002200
Alignment:
Q  124 aaatgttagtatgttaattattatgttag--atttttctccttgttagaacttgaaccttggacctccaactccctaccccttaactccaaccgattgag 221  Q
    ||||||||||||||||||| |||||||||   ||||||||||||  || |||| |||| | |||| ||||| || || |||||| ||| ||||  |||||    
T  32002087 aaatgttagtatgttaattgttatgttagttctttttctccttgccaggacttaaacccttgaccgccaacaccttaacccttagctcaaaccagttgag 32002186  T
Q  222 ctacccaacccccc 235  Q
    ||| ||||||||||    
T  32002187 ctaaccaacccccc 32002200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 117 - 182
Target Start/End: Original strand, 46896127 - 46896192
Alignment:
Q  117 taatgataaatgttagtatgttaattattatgttagatttttctccttgttagaacttgaaccttg 182  Q
    |||||| ||||||||||||||||||| |||| |||| ||||||| ||||| || |||| |||||||    
T  46896127 taatgacaaatgttagtatgttaattgttattttagttttttcttcttgtgaggactttaaccttg 46896192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 33084967 - 33085023
Alignment:
Q  182 ggacctccaactccctaccccttaactccaaccgattgagctacccaaccccccacc 238  Q
    |||||||||||||| || |||||| ||| ||||  ||||||||||||||||||||||    
T  33084967 ggacctccaactccatatcccttagctcaaaccagttgagctacccaaccccccacc 33085023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 161
Target Start/End: Original strand, 13636511 - 13636554
Alignment:
Q  118 aatgataaatgttagtatgttaattattatgttagatttttctc 161  Q
    |||||||||||||||| | |||||||||||||||| ||||||||    
T  13636511 aatgataaatgttagtgtattaattattatgttagttttttctc 13636554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 161
Target Start/End: Original strand, 13697698 - 13697741
Alignment:
Q  118 aatgataaatgttagtatgttaattattatgttagatttttctc 161  Q
    |||||||||||||||| | |||||||||||||||| ||||||||    
T  13697698 aatgataaatgttagtgtattaattattatgttagttttttctc 13697741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 12272477 - 12272538
Alignment:
Q  175 gaaccttggacctccaactccctaccccttaactccaaccgattgagctacccaacccccca 236  Q
    |||| |||||||||||||||| || || ||||||| ||||  ||||| ||||||||||||||    
T  12272477 gaactttggacctccaactccttaaccattaactcaaaccagttgagttacccaacccccca 12272538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 124 - 232
Target Start/End: Complemental strand, 42713686 - 42713578
Alignment:
Q  124 aaatgttagtatgttaattattatgttagatttttctccttgttagaacttgaaccttggacctccaactccctaccccttaactccaaccgattgagct 223  Q
    ||||||||||||||| |||  |||||||| ||||||||||||  |  |||| |||| |||||||| |||||  || |||||| ||| || |  |||||||    
T  42713686 aaatgttagtatgttgattgatatgttagttttttctccttgccaagacttaaaccctggacctctaactcgttaacccttagctcaaatcagttgagct 42713587  T
Q  224 acccaaccc 232  Q
     ||||||||    
T  42713586 gcccaaccc 42713578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 418 - 488
Target Start/End: Complemental strand, 28715616 - 28715546
Alignment:
Q  418 gtgttctctttcagcacgtcttatgcgggaagaattaccgttgttagtaatgcatttcattttggcttgtt 488  Q
    |||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||    
T  28715616 gtgttctctttcagcacgtcttgtgcggggagaattaccgttgtaagtaatgcatttcattttggcttgtt 28715546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 117 - 235
Target Start/End: Original strand, 29728743 - 29728863
Alignment:
Q  117 taatgataaatgttagtatgttaattattatgttagatttt--tctccttgttagaacttgaaccttggacctccaactccctaccccttaactccaacc 214  Q
    |||||| || |||||||||||||||| ||||||||| ||||  |||||||  ||| ||||||||| || | |||||||||| || |||||| ||| ||||    
T  29728743 taatgacaagtgttagtatgttaattgttatgttagttttttttctccttaataggacttgaaccctgaatctccaactccttaacccttagctcaaacc 29728842  T
Q  215 gattgagctacccaacccccc 235  Q
      |||||||||||||||||||    
T  29728843 agttgagctacccaacccccc 29728863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 124 - 187
Target Start/End: Complemental strand, 25209852 - 25209788
Alignment:
Q  124 aaatgttagtatgttaattattatgttag-atttttctccttgttagaacttgaaccttggacct 187  Q
    ||||||||||||||||||||||||||||| |||||||||||||  | |||||||||| |||||||    
T  25209852 aaatgttagtatgttaattattatgttagtatttttctccttgccaaaacttgaaccctggacct 25209788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 28485833 - 28485783
Alignment:
Q  117 taatgataaatgttagtatgttaattattatgtt-agatttttctccttgt 166  Q
    |||||| ||||||||||||||||||| ||||||| | ||||||||||||||    
T  28485833 taatgacaaatgttagtatgttaattgttatgttaatatttttctccttgt 28485783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 173 - 235
Target Start/End: Complemental strand, 38020429 - 38020367
Alignment:
Q  173 ttgaaccttggacctccaactccctaccccttaactccaaccgattgagctacccaacccccc 235  Q
    ||||||||||||||||||||||| || |||||| ||| ||||  ||||||||||  |||||||    
T  38020429 ttgaaccttggacctccaactccttaacccttagctcaaaccagttgagctacctgacccccc 38020367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 124 - 160
Target Start/End: Original strand, 40147781 - 40147816
Alignment:
Q  124 aaatgttagtatgttaattattatgttagatttttct 160  Q
    |||||||||||||||||||||||||||| ||||||||    
T  40147781 aaatgttagtatgttaattattatgtta-atttttct 40147816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 35108025 - 35107973
Alignment:
Q  117 taatgataaatgttagtatgttaattattatgttagatttttctccttgttag 169  Q
    |||||| |||||||||||||||||||||||| |||| ||||||||||||||||    
T  35108025 taatgacaaatgttagtatgttaattattatattagttttttctccttgttag 35107973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 118 - 188
Target Start/End: Complemental strand, 32535528 - 32535458
Alignment:
Q  118 aatgataaatgttagtatgttaattattatgttagatttttctccttgttagaacttgaaccttggacctc 188  Q
    ||||| |||||||| |||||||||| ||||||||| ||||||||||||| |  ||||||||| ||||||||    
T  32535528 aatgacaaatgttaatatgttaattgttatgttagctttttctccttgtcaagacttgaaccgtggacctc 32535458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 232
Target Start/End: Complemental strand, 30005807 - 30005693
Alignment:
Q  117 taatgataaatgttagtatgttaattattatgttagatttttctccttgttagaacttgaaccttggacctccaactccctaccccttaactccaaccga 216  Q
    ||||| ||||||||| | |||||||| ||||||||| ||||||||||||  || ||||| ||  |||||| |||||| | || |||||  ||| |||| |    
T  30005807 taatggtaaatgttactttgttaattgttatgttagttttttctccttgccaggacttggacgctggacc-ccaactacttaacccttggctcaaaccaa 30005709  T
Q  217 ttgagctacccaaccc 232  Q
    || |||||||||||||    
T  30005708 ttaagctacccaaccc 30005693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 118 - 158
Target Start/End: Original strand, 26413398 - 26413438
Alignment:
Q  118 aatgataaatgttagtatgttaattattatgttagattttt 158  Q
    ||||| ||||||||||||||||||| ||||||||| |||||    
T  26413398 aatgacaaatgttagtatgttaattgttatgttagcttttt 26413438  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 124 - 232
Target Start/End: Original strand, 16452169 - 16452277
Alignment:
Q  124 aaatgttagtatgttaattattatgttagatttttctccttgttagaacttgaaccttggacctccaactccctaccccttaactccaaccgattgagct 223  Q
    |||||||||||||||| || ||| ||||| |||||||||||| ||| |||||||||   |||||||||||    | |||||| ||| ||||  |||||||    
T  16452169 aaatgttagtatgttatttgttacgttagttttttctccttgctaggacttgaacccaagacctccaacttttgaacccttagctcaaaccagttgagct 16452268  T
Q  224 acccaaccc 232  Q
    |||||||||    
T  16452269 acccaaccc 16452277  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 191
Target Start/End: Complemental strand, 10697882 - 10697808
Alignment:
Q  117 taatgataaatgttagtatgttaattattatgttagatttttctccttgttagaacttgaaccttggacctccaa 191  Q
    ||||||||||| ||||||| ||| ||  |||||||| |||||||| ||||||||| |||||||||  ||||||||    
T  10697882 taatgataaatattagtatattagttgctatgttagttttttctctttgttagaatttgaaccttaaacctccaa 10697808  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 236
Target Start/End: Original strand, 14195146 - 14195256
Alignment:
Q  124 aaatgttagtatgttaattattatgttagattttt-ctccttgttagaacttgaaccttggacctccaactccctaccccttaactccaaccgattgagc 222  Q
    ||||||||||||||||||| | ||||||| ||||| ||||     |||||||||||  ||||||||||||||| || |||||| ||| ||||  ||||||    
T  14195146 aaatgttagtatgttaattttcatgttagtttttttctcccc---agaacttgaacactggacctccaactccttaacccttagctcaaaccagttgagc 14195242  T
Q  223 tacccaacccccca 236  Q
    |||||  |||||||    
T  14195243 tacccgtcccccca 14195256  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 118 - 160
Target Start/End: Original strand, 43821139 - 43821181
Alignment:
Q  118 aatgataaatgttagtatgttaattattatgttagatttttct 160  Q
    ||||||| ||||||||||||||||||||||||||  |||||||    
T  43821139 aatgatatatgttagtatgttaattattatgttaattttttct 43821181  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 118 - 190
Target Start/End: Complemental strand, 2579126 - 2579055
Alignment:
Q  118 aatgataaatgttagtatgttaattattatgttagatttttctccttgttagaacttgaaccttggacctcca 190  Q
    ||||||||||||||||||| ||||| ||||||||| |||||||| || | |  ||||||||| | ||||||||    
T  2579126 aatgataaatgttagtatgctaattgttatgttag-tttttctctttatcaagacttgaaccctagacctcca 2579055  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 117 - 160
Target Start/End: Complemental strand, 20464631 - 20464588
Alignment:
Q  117 taatgataaatgttagtatgttaattattatgttagatttttct 160  Q
    ||||||||||||||||||| |||||| |||||||||||||||||    
T  20464631 taatgataaatgttagtatattaattgttatgttagatttttct 20464588  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 117 - 157
Target Start/End: Complemental strand, 20494058 - 20494018
Alignment:
Q  117 taatgataaatgttagtatgttaattattatgttagatttt 157  Q
    |||||| ||||||||||||||||||||||||||||| ||||    
T  20494058 taatgacaaatgttagtatgttaattattatgttagttttt 20494018  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 118 - 158
Target Start/End: Complemental strand, 53506265 - 53506225
Alignment:
Q  118 aatgataaatgttagtatgttaattattatgttagattttt 158  Q
    ||||||||||||||||||||||||| ||||||||| |||||    
T  53506265 aatgataaatgttagtatgttaattgttatgttagtttttt 53506225  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 158
Target Start/End: Complemental strand, 223184 - 223143
Alignment:
Q  117 taatgataaatgttagtatgttaattattatgttagattttt 158  Q
    |||||||||||||||||||||||||| || |||||| |||||    
T  223184 taatgataaatgttagtatgttaattgttgtgttagtttttt 223143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 127 - 178
Target Start/End: Original strand, 6108848 - 6108899
Alignment:
Q  127 tgttagtatgttaattattatgttagatttttctccttgttagaacttgaac 178  Q
    ||||| |||||||||||||||||||| |||||||| |||| |||||||||||    
T  6108848 tgttaatatgttaattattatgttagttttttctctttgtcagaacttgaac 6108899  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 117 - 157
Target Start/End: Complemental strand, 9922242 - 9922202
Alignment:
Q  117 taatgataaatgttagtatgttaattattatgttagatttt 157  Q
    |||||| ||||||||||||||||||| ||||||||| ||||    
T  9922242 taatgacaaatgttagtatgttaattgttatgttagttttt 9922202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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