View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12737_high_7 (Length: 329)
Name: NF12737_high_7
Description: NF12737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12737_high_7 |
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| [»] scaffold0536 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 316
Target Start/End: Original strand, 3417067 - 3417365
Alignment:
| Q |
18 |
caaactttcctcttcctatcaccatgtgcagtaaaccaccaaaggttctcagtaaattcataggactgatgcttgacacagtgttcaaaagtaatggctt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3417067 |
caaactttcctcttcctatcaccatgtgcagtaaaccaccaaaggttctcagtaaattcataggactgatgcttgacacagtgttcaaaagtaatggctt |
3417166 |
T |
|
| Q |
118 |
catcgtcaacaacttcattgaacttgatggagaagagtgtattcaacactatgagaaaaccgcaggtcacaaggcttggcatcttggtccatcttctatt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3417167 |
tatcgtcaacaacttcattgaacttgatggagaagagtgtattcaacactatgagaaaaccgtaggtcacaaggcttggcatcttggtccatcttctatt |
3417266 |
T |
|
| Q |
218 |
tggagaaccactctagagaaagcaggtgggggaaacgagggtgctgagagtgagcatgagtgcctgagttggctcaactcacaacaagttgactcagtg |
316 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
3417267 |
tggagaaccactctagagaaatcaggtgggggaaacgagggtgctgagagtgagcatgagtgcctgcgttggctcaactcacaacaagttaactcagtg |
3417365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 18 - 316
Target Start/End: Complemental strand, 12541327 - 12541026
Alignment:
| Q |
18 |
caaactttcctcttcctatcaccatgtgcagtaaaccaccaaaggttctcagtaaattcataggactgatgcttgacacagtgttcaaaagtaatggctt |
117 |
Q |
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|||| ||||||| || ||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
12541327 |
caaattttcctcatcgtatcaccatgtgcagtaaaccgtcaaaggttctcagcaaattcataggattgatgcttgacacagtgttcaaaagtacaggcta |
12541228 |
T |
|
| Q |
118 |
catcgtcaacaacttcattgaacttgatggagaagagtgtattcaacactatgagaaaaccgcaggtcacaaggcttggcatcttggtcca---tcttct |
214 |
Q |
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||| |||||||||| ||||||||||||||||||||||| | |||||||| ||||||||| | ||||||||||||||||||||||||||| |||| | |
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| T |
12541227 |
cattatcaacaactttgttgaacttgatggagaagagtgtgtccaacactacgagaaaaccacgggtcacaaggcttggcatcttggtccaacttctttt |
12541128 |
T |
|
| Q |
215 |
atttggagaaccactctagagaaagcaggtgggggaaacgagggtgctgagagtgagcatgagtgcctgagttggctcaactcacaacaagttgactcag |
314 |
Q |
| |
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||| || || || || |||||||||||| ||||||| |||||||||| ||| ||||| |||| ||| || |||||||||||||| |||||| |||||| |
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| T |
12541127 |
attcagaaaaacattcaagagaaagcagggaggggaaatgagggtgctgcgagcgagcacgagtcccttagctggctcaactcacagcaagttaactcag |
12541028 |
T |
|
| Q |
315 |
tg |
316 |
Q |
| |
|
|| |
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|
| T |
12541027 |
tg |
12541026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 42 - 213
Target Start/End: Complemental strand, 28385952 - 28385781
Alignment:
| Q |
42 |
tgtgcagtaaaccaccaaaggttctcagtaaattcataggactgatgcttgacacagtgttcaaaagtaatggcttcatcgtcaacaacttcattgaact |
141 |
Q |
| |
|
|||| ||||||||||||||||||||||| | ||||||||| ||||||||||||| ||| ||||||||| |||| |||| |||||||||| ||||||| |
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| T |
28385952 |
tgtgtagtaaaccaccaaaggttctcagcatgttcataggaatgatgcttgacacggtgctcaaaagtacaggctacatcatcaacaactttgttgaact |
28385853 |
T |
|
| Q |
142 |
tgatggagaagagtgtattcaacactatgagaaaaccgcaggtcacaaggcttggcatcttggtccatcttc |
213 |
Q |
| |
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|||||||||||||||| | ||||||| ||||||||| | ||||||||||||||||||||||||||| |||| |
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| T |
28385852 |
tgatggagaagagtgtgtcaaacactacgagaaaaccacgggtcacaaggcttggcatcttggtccaacttc |
28385781 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 13440842 - 13440646
Alignment:
| Q |
18 |
caaactttcctcttcctatcaccatgtgcagtaaaccaccaaaggttctcagtaaattcataggactgatgcttgacacagtgttcaaaagtaatggctt |
117 |
Q |
| |
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|||| ||||||| || ||| ||| ||||| | ||||| |||||||| | || |||||| || | ||||||||| |||||| |||||||||| | | |
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| T |
13440842 |
caaattttcctcatcgtataaccttgtgcggaaaaccgccaaaggtaattagcaaattcctaaaaatgatgcttgggacagtgctcaaaagtaaagcact |
13440743 |
T |
|
| Q |
118 |
catcgtcaacaacttcattgaacttgatggagaagagtgtattcaacactatgagaaaaccgcaggtcacaaggcttggcatcttggtccatcttct |
214 |
Q |
| |
|
|||| |||||||||||| ||||||||| ||||||||||| || |||||||||||||||||| | |||||||||| ||||||||| |||||| ||||| |
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| T |
13440742 |
catcatcaacaacttcactgaacttgacggagaagagtgcatccaacactatgagaaaaccacgggtcacaaggtttggcatctcggtccaacttct |
13440646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 50 - 292
Target Start/End: Complemental strand, 13448973 - 13448728
Alignment:
| Q |
50 |
aaaccaccaaaggttctcagtaaattcataggactgatgcttgacacagtgttcaaaagtaatggcttcatcgtcaacaacttcattgaacttgatggag |
149 |
Q |
| |
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||||| |||||||| || ||| |||||| ||| |||||||||| || ||| | |||||||| | | ||| |||||||||||| |||||||||||||| |
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| T |
13448973 |
aaaccgccaaaggtaatcggtatattcatgggaatgatgcttgagacggtgcttaaaagtaaagcactaatcatcaacaacttcagtgaacttgatggag |
13448874 |
T |
|
| Q |
150 |
aagagtgtattcaacactatgagaaaaccgcaggtcacaaggcttggcatcttggtccatcttc---tatttggagaaccactctagagaaagcaggtgg |
246 |
Q |
| |
|
||||||| || |||||||| |||||| || | |||||||||| |||||||||||||||| |||| |||| | | ||| ||| ||||||| ||| | |
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|
| T |
13448873 |
aagagtgcatacaacactacgagaaagccacgggtcacaaggtttggcatcttggtccaacttctcttattcgcaaaactgctcaagagaaatcagagag |
13448774 |
T |
|
| Q |
247 |
gggaaacgagggtgctgagagtgagcatgagtgcctgagttggctc |
292 |
Q |
| |
|
|||||| |||||||||| || || ||| ||| |||||||||||||| |
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| T |
13448773 |
gggaaatgagggtgctgtgaatgtgcacgagagcctgagttggctc |
13448728 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 123 - 214
Target Start/End: Complemental strand, 13455371 - 13455280
Alignment:
| Q |
123 |
tcaacaacttcattgaacttgatggagaagagtgtattcaacactatgagaaaaccgcaggtcacaaggcttggcatcttggtccatcttct |
214 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||| || |||||||| || ||||| |||||||||||| ||||||| |||||||| ||||| |
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|
| T |
13455371 |
tcaacaacttcagtgaatttgatggagaagagtgcatccaacactacgaaaaaacaacaggtcacaaggtttggcatattggtccaacttct |
13455280 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 102 - 214
Target Start/End: Original strand, 12589787 - 12589899
Alignment:
| Q |
102 |
tcaaaagtaatggcttcatcgtcaacaacttcattgaacttgatggagaagagtgtattcaacactatgagaaaaccgcaggtcacaaggcttggcatct |
201 |
Q |
| |
|
||||||||||||| |||| || ||||||||| |||||||||||| |||||||| | ||||||||||||||||| |||||||||||||||||||||| |
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| T |
12589787 |
tcaaaagtaatggactcattgttaacaacttcgctgaacttgatggccaagagtgtgtcaaacactatgagaaaaccacaggtcacaaggcttggcatct |
12589886 |
T |
|
| Q |
202 |
tggtccatcttct |
214 |
Q |
| |
|
||||||| ||||| |
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| T |
12589887 |
tggtccagcttct |
12589899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 8e-21; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 84 - 207
Target Start/End: Complemental strand, 48958723 - 48958600
Alignment:
| Q |
84 |
tgatgcttgacacagtgttcaaaagtaatggcttcatcgtcaacaacttcattgaacttgatggagaagagtgtattcaacactatgagaaaaccgcagg |
183 |
Q |
| |
|
|||||||||| ||| | |||||||||| || ||||| ||||||||||||||||||||||||| |||||||| || ||||||| |||||| | | || |
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|
| T |
48958723 |
tgatgcttgagacaatcctcaaaagtaagggactcatcatcaacaacttcattgaacttgatggtgaagagtgcatcgaacactacaagaaaatcacggg |
48958624 |
T |
|
| Q |
184 |
tcacaaggcttggcatcttggtcc |
207 |
Q |
| |
|
|||||||| ||||||||||||||| |
|
|
| T |
48958623 |
tcacaaggtttggcatcttggtcc |
48958600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 117 - 208
Target Start/End: Complemental strand, 48962837 - 48962746
Alignment:
| Q |
117 |
tcatcgtcaacaacttcattgaacttgatggagaagagtgtattcaacactatgagaaaaccgcaggtcacaaggcttggcatcttggtcca |
208 |
Q |
| |
|
|||| |||||||||||| ||||||||| || |||||||| || ||||||| ||||||||| | |||||||||||||||||||| |||||| |
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|
| T |
48962837 |
tcattgtcaacaacttcgctgaacttgacggtgaagagtgcatcgaacactacgagaaaaccacgggtcacaaggcttggcatctcggtcca |
48962746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 214
Target Start/End: Original strand, 48911950 - 48912075
Alignment:
| Q |
89 |
cttgacacagtgttcaaaagtaatggcttcatcgtcaacaacttcattgaacttgatggagaagagtgtattcaacactatgagaaaaccgcaggtcaca |
188 |
Q |
| |
|
||||| ||||| ||||||||||| || || | |||||||| || ||||||||| || ||||||| ||| ||||||| |||||||| | |||||| |
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|
| T |
48911950 |
cttgagacagttttcaaaagtaacggaatccttgtcaacaattttgctgaacttgacggtgaagagtatatcgaacactacgagaaaactacttgtcaca |
48912049 |
T |
|
| Q |
189 |
aggcttggcatcttggtccatcttct |
214 |
Q |
| |
|
| |||||||||||||||||| ||||| |
|
|
| T |
48912050 |
aagcttggcatcttggtccagcttct |
48912075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 155
Target Start/End: Complemental strand, 48974652 - 48974614
Alignment:
| Q |
117 |
tcatcgtcaacaacttcattgaacttgatggagaagagt |
155 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
48974652 |
tcatcgtcaacaacttcactgagcttgatggagaagagt |
48974614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 208
Target Start/End: Original strand, 12641122 - 12641205
Alignment:
| Q |
125 |
aacaacttcattgaacttgatggagaagagtgtattcaacactatgagaaaaccgcaggtcacaaggcttggcatcttggtcca |
208 |
Q |
| |
|
|||||||| ||||||||||||| ||||| || || ||||||||||||||||| ||| ||||||||||||||||||||||| |
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|
| T |
12641122 |
aacaactttgttgaacttgatggtgaagattgcatcaaacactatgagaaaaccatgggttacaaggcttggcatcttggtcca |
12641205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 207
Target Start/End: Original strand, 6163 - 6234
Alignment:
| Q |
136 |
tgaacttgatggagaagagtgtattcaacactatgagaaaaccgcaggtcacaaggcttggcatcttggtcc |
207 |
Q |
| |
|
||||||||| || ||||||| || ||||||| |||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
6163 |
tgaacttgacggtgaagagtacatcgaacactacgagaaaactacaggtcacaaagcttggcatcttggtcc |
6234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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