View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12737_low_1 (Length: 712)
Name: NF12737_low_1
Description: NF12737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12737_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 556; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 14 - 682
Target Start/End: Original strand, 5051697 - 5052371
Alignment:
| Q |
14 |
cgttcactgaattggagctgtgagatta------agaagcgctttgcgatggatttgcatctcactcctgtcttgtatggacacgactccatatctccat |
107 |
Q |
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|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5051697 |
cgttcattgaattggagctgtgagattattgctaagaagcgctttgcgatggatttgcatctcactcctgtcttgtatggacacgactccatatctccat |
5051796 |
T |
|
| Q |
108 |
ccatatatcatctgataagttctccatgttgattgtagtatatattgcta-tagattgtatgttcacgagctattacctaccaaattttaattggataat |
206 |
Q |
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| T |
5051797 |
ccatatatcatctgataagttctccatgttgattgtagtatatattgctaatagattgtatgttcacgagctattacctaccaaatttaaattggataat |
5051896 |
T |
|
| Q |
207 |
ggattttgatacttagttgaacaattatgatagccctttgcccaactgttaaattatgtattattgctgacttgattgatcccggccccaatcacgagga |
306 |
Q |
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| T |
5051897 |
tgattctgatacttagttgaacaattatgatagccctttgcccaactgtcaaattatgtattgttgctgacttgattgatcccggccccgatcacgagga |
5051996 |
T |
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| Q |
307 |
gaagattgaggggacatgacatttgatatctattagttgtgtactttaaccccctcattccctttacttactgccatgttcataggccactcttaaagat |
406 |
Q |
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| T |
5051997 |
gaagattgaggggacatgacatttgatatctattagttgtgtactttaaccccctcattccctttacttactgccatgttcataggccactctcaaagac |
5052096 |
T |
|
| Q |
407 |
agtgaggttcaaagtattgacattgccaagaaggcgtttacaggaatgtgagtttggattggaatattcagtgaacattgaagacaatagtaccttggtt |
506 |
Q |
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| T |
5052097 |
agtgaggttcaatgtattgacattgccaagaaggcgtttacaggaatgtgagtttggattggaa-attcagtgaacatttaagacaatagtaccttggtt |
5052195 |
T |
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| Q |
507 |
tcaaatgttttatggtcatgacgtaggcatgatctcatcaaatttggatatgttttaatgttttgcattgacttaactagtcaatgttnnnnnnnttgat |
606 |
Q |
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| T |
5052196 |
tcagatgttttatggtcatgacgtaggcatgatctcatcaaatttggatatgttttaatgctttgcattgacttaactagtcaatgttaaaaaatttgat |
5052295 |
T |
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| Q |
607 |
tataatatacaatatggatttcaaatatagtagttaatatcaaatttgcacggtgatataacagggatgcccttca |
682 |
Q |
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| T |
5052296 |
tataatatacaatatggctttcaaatatagtagttaatatcaaatttgcacggtgctataacagggatgcccttca |
5052371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 496 - 575
Target Start/End: Original strand, 5048194 - 5048273
Alignment:
| Q |
496 |
gtaccttggtttcaaatgttttatggtcatgacgtaggcatgatctcatcaaatttggatatgttttaatgttttgcatt |
575 |
Q |
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| T |
5048194 |
gtaccttagtttcaaatgtttgactgttctgacttggtcatgatctcatcaaatttggatatgttttaatgctttgcatt |
5048273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 638 - 695
Target Start/End: Original strand, 5048513 - 5048569
Alignment:
| Q |
638 |
agttaatatcaaatttgcacggtgatataacagggatgcccttcacttctgtgatgtg |
695 |
Q |
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| T |
5048513 |
agttaatatcaaatttgcacggtccta-aatagggatgcccttcacttttgtgatgtg |
5048569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 4e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 13 - 225
Target Start/End: Complemental strand, 51273673 - 51273452
Alignment:
| Q |
13 |
tcgttcactgaattggagctgtgagattaa------gaagcgctttgcgatggatttgcatctcactcctgtcttgtatgga-cacgactccatatctcc |
105 |
Q |
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||||||| |||||||||||||||||||||| ||| ||||||| |||||||||||| |||||| |||||||||| | | |||||||||||||||| |
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| T |
51273673 |
tcgttcaatgaattggagctgtgagattaaagctaagaaacgctttgagatggatttgcaactcactgctgtcttgtacgaaacacgactccatatctct |
51273574 |
T |
|
| Q |
106 |
atccatatatcatctgataagttctccatgttgattgtagtatatattgcta-tagattg-tatgttcacgagctattacctaccaaattttaattggat |
203 |
Q |
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||| ||| |||||||||||| ||||||||||||||| ||||||||||||||| | |||| |||||||| ||||||| | |||||||||||||||||||| |
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| T |
51273573 |
atcaataaatcatctgataaattctccatgttgattttagtatatattgctagaatattgttatgttcaagagctataagctaccaaattttaattggat |
51273474 |
T |
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| Q |
204 |
aatggattttgatacttagttg |
225 |
Q |
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||| |||| |||||||| |||| |
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| T |
51273473 |
aatcgattctgatacttggttg |
51273452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 40 - 159
Target Start/End: Complemental strand, 14907717 - 14907597
Alignment:
| Q |
40 |
taagaagcgctttgcgatggatttgcatctcactcctgtcttgtatgga-cacgactccatatctccatccatatatcatctgataagttctccatgttg |
138 |
Q |
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||||| |||||||| |||||||||| | |||||| ||| ||||||| | ||||| ||||| |||| ||| ||| |||||||||||| |||||||||||| |
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| T |
14907717 |
taagatgcgctttgagatggatttgtaactcactgatgttttgtatgaaacacgaatccatgtctctatcaataaatcatctgataaattctccatgttg |
14907618 |
T |
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| Q |
139 |
attgtagtatatattgctata |
159 |
Q |
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||| |||||||||||||||| |
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| T |
14907617 |
atttaagtatatattgctata |
14907597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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