View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12737_low_10 (Length: 413)

Name: NF12737_low_10
Description: NF12737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12737_low_10
NF12737_low_10
[»] chr1 (6 HSPs)
chr1 (70-143)||(52689229-52689302)
chr1 (1-68)||(19180040-19180107)
chr1 (1-73)||(5649409-5649480)
chr1 (1-68)||(4168357-4168423)
chr1 (2-73)||(12622830-12622896)
chr1 (25-73)||(21864763-21864811)
[»] chr7 (11 HSPs)
chr7 (1-68)||(21002108-21002175)
chr7 (1-68)||(9434382-9434449)
chr7 (1-68)||(5686677-5686745)
chr7 (1-73)||(6876943-6877014)
chr7 (30-68)||(5711419-5711457)
chr7 (24-73)||(8618538-8618587)
chr7 (2-73)||(22090323-22090391)
chr7 (25-73)||(17959797-17959845)
chr7 (2-73)||(4213170-4213236)
chr7 (2-73)||(168040-168107)
chr7 (1-57)||(19993116-19993171)
[»] chr6 (7 HSPs)
chr6 (1-68)||(9122165-9122232)
chr6 (1-63)||(25590321-25590382)
chr6 (1-73)||(7669444-7669513)
chr6 (1-57)||(27373899-27373955)
chr6 (1-57)||(27464252-27464308)
chr6 (25-73)||(32971532-32971580)
chr6 (2-73)||(34816808-34816875)
[»] chr5 (6 HSPs)
chr5 (1-68)||(5291630-5291697)
chr5 (1-68)||(27604508-27604576)
chr5 (1-73)||(39361422-39361495)
chr5 (1-68)||(40400141-40400207)
chr5 (1-57)||(31447658-31447714)
chr5 (2-73)||(22156227-22156294)
[»] chr8 (3 HSPs)
chr8 (1-73)||(26112419-26112490)
chr8 (1-67)||(19129892-19129960)
chr8 (2-73)||(6152242-6152309)
[»] chr3 (9 HSPs)
chr3 (1-68)||(37867618-37867686)
chr3 (1-68)||(37876136-37876204)
chr3 (1-75)||(6219690-6219763)
chr3 (1-75)||(19779548-19779621)
chr3 (2-73)||(13122839-13122906)
chr3 (2-73)||(20682770-20682837)
chr3 (1-57)||(16390577-16390633)
chr3 (357-401)||(46223009-46223053)
chr3 (2-73)||(14466766-14466832)
[»] chr2 (5 HSPs)
chr2 (1-68)||(43083789-43083857)
chr2 (1-73)||(24337416-24337486)
chr2 (1-68)||(29245346-29245415)
chr2 (25-73)||(4211034-4211082)
chr2 (2-73)||(22959356-22959423)
[»] chr4 (5 HSPs)
chr4 (3-73)||(19953997-19954068)
chr4 (1-73)||(17919243-17919314)
chr4 (1-73)||(24027078-24027147)
chr4 (2-73)||(16257063-16257129)
chr4 (5-65)||(40469636-40469694)
[»] scaffold1216 (1 HSPs)
scaffold1216 (5-65)||(227-285)


Alignment Details
Target: chr1 (Bit Score: 74; Significance: 8e-34; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 70 - 143
Target Start/End: Complemental strand, 52689302 - 52689229
Alignment:
Q  70 ctgcttactacaattttcacacttagaaaactcacctactaactagcccttatactcgttccatttattccact 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52689302 ctgcttactacaattttcacacttagaaaactcacctactaactagcccttatactcgttccatttattccact 52689229  T

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Target: chr1; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 19180107 - 19180040
Alignment:
Q  1 gcccaaccttagttgcacacccaattttctttgcttgttttaatctttgttctaagtactttagttgc 68  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  19180107 gcccaaccttagttgcacacccagttttctttgcttgttttaatctttgttctaagtactttagttgc 19180040  T

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Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 5649409 - 5649480
Alignment:
Q  1 gcccaaccttagttgcacacccaattttctttgcttgttttaatctttgttctaagtactttagttgctctgc 73  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  5649409 gcccaaccttagttgcacacc-aattttttttgcttgttttaatctttgttctaagtactttagttgcactgc 5649480  T

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Target: chr1; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 4168423 - 4168357
Alignment:
Q  1 gcccaaccttagttgcacacccaattttctttgcttgttttaatctttgttctaagtactttagttgc 68  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  4168423 gcccaaccttagttgcacacccattttt-tttgcttgttttaatctttgttctaagtactttagttgc 4168357  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 12622830 - 12622896
Alignment:
Q  2 cccaaccttagttgcacacccaattttctttgcttgttttaatctttgttctaagtactttagttgctctgc 73  Q
    ||||||||||||||||||     |||| ||||||||||||||| ||||||||||||||||||||||| ||||    
T  12622830 cccaaccttagttgcaca-----ttttttttgcttgttttaatttttgttctaagtactttagttgcactgc 12622896  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 21864811 - 21864763
Alignment:
Q  25 ttttctttgcttgttttaatctttgttctaagtactttagttgctctgc 73  Q
    |||| |||||||||||||||  |||||||||||||||||||||| ||||    
T  21864811 ttttttttgcttgttttaattcttgttctaagtactttagttgcactgc 21864763  T

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Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 21002108 - 21002175
Alignment:
Q  1 gcccaaccttagttgcacacccaattttctttgcttgttttaatctttgttctaagtactttagttgc 68  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21002108 gcccaaccttagttgcacacccaattttctttgcttgttttaatctttgttctaagtactttagttgc 21002175  T

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Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 9434449 - 9434382
Alignment:
Q  1 gcccaaccttagttgcacacccaattttctttgcttgttttaatctttgttctaagtactttagttgc 68  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  9434449 gcccaaccttagttgcacacccatttttctttgcttgttttaatttttgttctaagtactttagttgc 9434382  T

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Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 5686745 - 5686677
Alignment:
Q  1 gcccaaccttagttgcacacccaatttt-ctttgcttgttttaatctttgttctaagtactttagttgc 68  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  5686745 gcccaaccttagttgcacacccattttttctttgcttgttttaatctttgttctaagtactttagttgc 5686677  T

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Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 6876943 - 6877014
Alignment:
Q  1 gcccaaccttagttgcacacccaattttctttgcttgttttaatctttgttctaagtactttagttgctctgc 73  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  6876943 gcccaaccttagttgcacacccattttt-tttgcttgttttaatctttgttctaagtactttagttgcactgc 6877014  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 5711457 - 5711419
Alignment:
Q  30 tttgcttgttttaatctttgttctaagtactttagttgc 68  Q
    |||||||||||||||||||||||||||||||||||||||    
T  5711457 tttgcttgttttaatctttgttctaagtactttagttgc 5711419  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 8618587 - 8618538
Alignment:
Q  24 attttctttgcttgttttaatctttgttctaagtactttagttgctctgc 73  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||| ||||    
T  8618587 attttttttgcttgttttaatttttgttctaagtactttagttgcactgc 8618538  T

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Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 22090391 - 22090323
Alignment:
Q  2 cccaaccttagttgcacacccaattttctttgcttgttttaatctttgttctaagtactttagttgctctgc 73  Q
    ||||||||||||||||||||   |||| |||||||||||||||  |||||||| ||||||||||||| ||||    
T  22090391 cccaaccttagttgcacacc---ttttttttgcttgttttaattcttgttctacgtactttagttgcactgc 22090323  T

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Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 17959797 - 17959845
Alignment:
Q  25 ttttctttgcttgttttaatctttgttctaagtactttagttgctctgc 73  Q
    |||| ||||||||||||||| ||||||||||||||||||||||| ||||    
T  17959797 ttttttttgcttgttttaatttttgttctaagtactttagttgcactgc 17959845  T

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Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 4213236 - 4213170
Alignment:
Q  2 cccaaccttagttgcacacccaattttctttgcttgttttaatctttgttctaagtactttagttgctctgc 73  Q
    ||||||||||||||||||     |||| |||||||||||||||  |||||||||||||||||||||| ||||    
T  4213236 cccaaccttagttgcaca-----ttttttttgcttgttttaattcttgttctaagtactttagttgcactgc 4213170  T

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Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 168107 - 168040
Alignment:
Q  2 cccaaccttagttgcacacccaattttctttgcttgttttaatctttgttctaagtactttagttgctctgc 73  Q
    ||||||||||||||||||     |||| |||||||||||||||  |||||||||||||||||||||| ||||    
T  168107 cccaaccttagttgcacat----ttttttttgcttgttttaattgttgttctaagtactttagttgcactgc 168040  T

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Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 19993116 - 19993171
Alignment:
Q  1 gcccaaccttagttgcacacccaattttctttgcttgttttaatctttgttctaagt 57  Q
    ||||||||||||||||||||||||   |||||||||| |||||| ||||||||||||    
T  19993116 gcccaaccttagttgcacacccaacactctttgcttg-tttaatttttgttctaagt 19993171  T

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Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 9122165 - 9122232
Alignment:
Q  1 gcccaaccttagttgcacacccaattttctttgcttgttttaatctttgttctaagtactttagttgc 68  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9122165 gcccaaccttagttgcacacccaattttctttgcttgttttaatctttgttctaagtactttagttgc 9122232  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 25590382 - 25590321
Alignment:
Q  1 gcccaaccttagttgcacacccaattttctttgcttgttttaatctttgttctaagtacttta 63  Q
    ||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||    
T  25590382 gcccaaccttagttgcacacccatttttctt-gctagttttaatctttgttctaagtacttta 25590321  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 7669444 - 7669513
Alignment:
Q  1 gcccaaccttagttgcacacccaatt-ttctttgcttgttttaatctttgttctaagtactttagttgctctgc 73  Q
    ||||||||||||||||||||||| || ||||||||||||    |||||||||||||||||||||||||| ||||    
T  7669444 gcccaaccttagttgcacacccatttattctttgcttgt----atctttgttctaagtactttagttgcactgc 7669513  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 27373955 - 27373899
Alignment:
Q  1 gcccaaccttagttgcacacccaattttctttgcttgttttaatctttgttctaagt 57  Q
    ||||||||||||||||||||||||   ||||||||||||||||| ||||||||||||    
T  27373955 gcccaaccttagttgcacacccaacactctttgcttgttttaatttttgttctaagt 27373899  T

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Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 27464308 - 27464252
Alignment:
Q  1 gcccaaccttagttgcacacccaattttctttgcttgttttaatctttgttctaagt 57  Q
    ||||||||||||||||||||||||   ||||||||||||||||| ||||||||||||    
T  27464308 gcccaaccttagttgcacacccaacactctttgcttgttttaatttttgttctaagt 27464252  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 32971532 - 32971580
Alignment:
Q  25 ttttctttgcttgttttaatctttgttctaagtactttagttgctctgc 73  Q
    |||| ||||| ||||||||| ||||||||||||||||||||||| ||||    
T  32971532 ttttttttgcctgttttaatttttgttctaagtactttagttgcactgc 32971580  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 34816808 - 34816875
Alignment:
Q  2 cccaaccttagttgcacacccaattttctttgcttgttttaatcttt-gttctaagtactttagttgctctgc 73  Q
    ||||||||||||||||||     |||| ||||||||||||||| ||| |||||||||||||||||||| ||||    
T  34816808 cccaaccttagttgcaca-----ttttttttgcttgttttaattttttgttctaagtactttagttgcactgc 34816875  T

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Target: chr5 (Bit Score: 64; Significance: 7e-28; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 5291697 - 5291630
Alignment:
Q  1 gcccaaccttagttgcacacccaattttctttgcttgttttaatctttgttctaagtactttagttgc 68  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5291697 gcccaaccttagttgcacacccagttttctttgcttgttttaatctttgttctaagtactttagttgc 5291630  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 27604576 - 27604508
Alignment:
Q  1 gcccaaccttagttgcacacccaatt-ttctttgcttgttttaatctttgttctaagtactttagttgc 68  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  27604576 gcccaaccttagttgcacacccatttattctttgcttgttttaatctttgttctaagtactttagttgc 27604508  T

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Target: chr5; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 39361422 - 39361495
Alignment:
Q  1 gcccaaccttagttgcacacccaatt-ttctttgcttgttttaatctttgttctaagtactttagttgctctgc 73  Q
    ||||||||||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||| ||||    
T  39361422 gcccaaccttagttgcacacccttttattctttgcttgttttaatctttgttctaagtactttagttgcactgc 39361495  T

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Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 40400141 - 40400207
Alignment:
Q  1 gcccaaccttagttgcacacccaattttctttgcttgttttaatctttgttctaagtactttagttgc 68  Q
    |||||||| |||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||    
T  40400141 gcccaaccctagttgcacacc-aattttttttgcttgttttaatctttattctaagtactttagttgc 40400207  T

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Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 31447658 - 31447714
Alignment:
Q  1 gcccaaccttagttgcacacccaattttctttgcttgttttaatctttgttctaagt 57  Q
    ||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||    
T  31447658 gcccaaccttagttgcacacccaacattctttgcttgttttaatttttgttctaagt 31447714  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 22156227 - 22156294
Alignment:
Q  2 cccaaccttagttgcacacccaattttctttgcttgttttaatcttt-gttctaagtactttagttgctctgc 73  Q
    ||||||||||||||||||     |||| ||||||||||||||| ||| |||||||||||||||||||| ||||    
T  22156227 cccaaccttagttgcaca-----ttttttttgcttgttttaattttttgttctaagtactttagttgcactgc 22156294  T

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Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 26112490 - 26112419
Alignment:
Q  1 gcccaaccttagttgcacacccaattttctttgcttgttttaatctttgttctaagtactttagttgctctgc 73  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  26112490 gcccaaccttagttgcacacccattttt-tttgcttgttttaatctttgttctaagtactttagttgcactgc 26112419  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 19129960 - 19129892
Alignment:
Q  1 gcccaaccttagttgcacacccaatttt--ctttgcttgttttaatctttgttctaagtactttagttg 67  Q
    ||||||||||||||||||||||| ||||  ||||||||||| |||||||||||||||||| ||||||||    
T  19129960 gcccaaccttagttgcacacccatttttttctttgcttgttataatctttgttctaagtattttagttg 19129892  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 6152309 - 6152242
Alignment:
Q  2 cccaaccttagttgcacacccaattttctttgcttgttttaatctttgttctaagtactttagttgctctgc 73  Q
    ||||||||||||||||||     |||| ||||||||||||||| ||||||||||||||||||||||| ||||    
T  6152309 cccaaccttagttgcacat----ttttttttgcttgttttaatttttgttctaagtactttagttgcactgc 6152242  T

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Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 37867686 - 37867618
Alignment:
Q  1 gcccaaccttagttgcacacccaatt-ttctttgcttgttttaatctttgttctaagtactttagttgc 68  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  37867686 gcccaaccttagttgcacacccatttattctttgcttgttttaatctttgttctaagtactttagttgc 37867618  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 37876204 - 37876136
Alignment:
Q  1 gcccaaccttagttgcacacccaatt-ttctttgcttgttttaatctttgttctaagtactttagttgc 68  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  37876204 gcccaaccttagttgcacacccatttattctttgcttgttttaatctttgttctaagtactttagttgc 37876136  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 6219690 - 6219763
Alignment:
Q  1 gcccaaccttagttgcacacccaattttctttgcttgttttaatctttgttctaagtactttagttgctctgctt 75  Q
    ||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||| ||||||    
T  6219690 gcccaaccttagttgcacacc-aattttttttgcttgctttaatctttgttctaagtactttagttgcactgctt 6219763  T

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Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 19779621 - 19779548
Alignment:
Q  1 gcccaaccttagttgcacacccaattttctttgcttgttttaatctttgttctaagtactttagttgctctgctt 75  Q
    ||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  19779621 gcccaaccttagttgcacaccctttttt-tttgcttgttttaatctttgttctaagtactttagttgcactgctt 19779548  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 13122906 - 13122839
Alignment:
Q  2 cccaaccttagttgcacacccaattttctttgcttgttttaatctttgttctaagtactttagttgctctgc 73  Q
    ||||||||||||||||||     |||| ||||||||||||||| ||||||||||||||||||||||| ||||    
T  13122906 cccaaccttagttgcacat----ttttttttgcttgttttaatttttgttctaagtactttagttgcactgc 13122839  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 20682770 - 20682837
Alignment:
Q  2 cccaaccttagttgcacacccaattttctttgcttgttttaatctttgttctaagtactttagttgctctgc 73  Q
    ||||||||||||||||||     |||| ||||||||||||||| ||||||||||||||||||||||| ||||    
T  20682770 cccaaccttagttgcacat----ttttttttgcttgttttaatttttgttctaagtactttagttgcactgc 20682837  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 16390577 - 16390633
Alignment:
Q  1 gcccaaccttagttgcacacccaattttctttgcttgttttaatctttgttctaagt 57  Q
    |||||||||||||||||||||| |  |||||||||||||||||| |||| |||||||    
T  16390577 gcccaaccttagttgcacacccgacattctttgcttgttttaatttttgctctaagt 16390633  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 357 - 401
Target Start/End: Complemental strand, 46223053 - 46223009
Alignment:
Q  357 aagttgtatgctttctagttcaagtagcaattcctgtctctgctt 401  Q
    |||| ||||| |||||||||||||||||||||| |||||||||||    
T  46223053 aagtagtatgttttctagttcaagtagcaattcatgtctctgctt 46223009  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 14466832 - 14466766
Alignment:
Q  2 cccaaccttagttgcacacccaattttctttgcttgttttaatctttgttctaagtactttagttgctctgc 73  Q
    ||||||||||||||||||     |||| ||||||||||||||| |||||||||| ||||||| |||| ||||    
T  14466832 cccaaccttagttgcaca-----ttttttttgcttgttttaatttttgttctaactactttacttgcactgc 14466766  T

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Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 43083857 - 43083789
Alignment:
Q  1 gcccaaccttagttgcacacccaatt-ttctttgcttgttttaatctttgttctaagtactttagttgc 68  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  43083857 gcccaaccttagttgcacacccatttattctttgcttgttttaatctttgttctaagtactttagttgc 43083789  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 24337416 - 24337486
Alignment:
Q  1 gcccaaccttagttgcacacccaattttctttgcttgttttaatctttgttctaagtactttagttgctctgc 73  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  24337416 gcccaaccttagttgcacacc-aatttt-tttgcttgttttaatctttgttctaagtactttagttgcactgc 24337486  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 29245415 - 29245346
Alignment:
Q  1 gcccaaccttagttgcacacccaatttt--ctttgcttgttttaatctttgttctaagtactttagttgc 68  Q
    ||||||||||||||||||||||| ||||  |||||||||||||||||| ||||||||||| |||||||||    
T  29245415 gcccaaccttagttgcacacccatttttttctttgcttgttttaatctctgttctaagtattttagttgc 29245346  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 4211082 - 4211034
Alignment:
Q  25 ttttctttgcttgttttaatctttgttctaagtactttagttgctctgc 73  Q
    |||| ||||||||||||||| ||||||||||||||||||||||| ||||    
T  4211082 ttttttttgcttgttttaatttttgttctaagtactttagttgcactgc 4211034  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 22959356 - 22959423
Alignment:
Q  2 cccaaccttagttgcacacccaattttctttgcttgttttaatcttt-gttctaagtactttagttgctctgc 73  Q
    ||||||||||||||||||     |||| ||||||||||||||| ||| |||||||||||||||||||| ||||    
T  22959356 cccaaccttagttgcaca-----ttttttttgcttgttttaattttttgttctaagtactttagttgcactgc 22959423  T

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Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 19953997 - 19954068
Alignment:
Q  3 ccaaccttagttgcacacccaatt-ttctttgcttgttttaatctttgttctaagtactttagttgctctgc 73  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||    
T  19953997 ccaaccttagttgcacacccatttattctttgcttgttttaatctttgttctaagtactttagttgcactgc 19954068  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 17919314 - 17919243
Alignment:
Q  1 gcccaaccttagttgcacacccaattttctttgcttgttttaatctttgttctaagtactttagttgctctgc 73  Q
    ||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  17919314 gcccaaccttagttgcacacctattttt-tttgcttgttttaatctttgttctaagtactttagttgcactgc 17919243  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 24027078 - 24027147
Alignment:
Q  1 gcccaaccttagttgcacacccaatt-ttctttgcttgttttaatctttgttctaagtactttagttgctctgc 73  Q
    ||||||||||||||||||||||| || ||||||||||||    |||||||||||||||||||||||||| ||||    
T  24027078 gcccaaccttagttgcacacccatttattctttgcttgt----atctttgttctaagtactttagttgcactgc 24027147  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 16257129 - 16257063
Alignment:
Q  2 cccaaccttagttgcacacccaattttctttgcttgttttaatctttgttctaagtactttagttgctctgc 73  Q
    ||||||||||||||||||     |||| ||||||||||||||| ||||||||||||||||||||||| ||||    
T  16257129 cccaaccttagttgcaca-----ttttttttgcttgttttaatttttgttctaagtactttagttgcactgc 16257063  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 40469636 - 40469694
Alignment:
Q  5 aaccttagttgcacacccaattttctttgcttgttttaatctttgttctaagtactttagt 65  Q
    |||||||||||||||||| ||||| |||||||| |||||| |||||||||| || ||||||    
T  40469636 aaccttagttgcacaccc-attttttttgcttg-tttaatttttgttctaaatattttagt 40469694  T

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Target: scaffold1216 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1216
Description:

Target: scaffold1216; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 285 - 227
Alignment:
Q  5 aaccttagttgcacacccaattttctttgcttgttttaatctttgttctaagtactttagt 65  Q
    ||||||||||||||||||| | |||||||||||||| ||| ||||||||||||| ||||||    
T  285 aaccttagttgcacaccca-tcttctttgcttgttt-aatttttgttctaagtattttagt 227  T

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