View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12737_low_12 (Length: 402)
Name: NF12737_low_12
Description: NF12737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12737_low_12 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 402
Target Start/End: Complemental strand, 25011137 - 25010756
Alignment:
| Q |
18 |
tcatgatcatacacagtctgcaattagaaagaaaataatcaaccaatgagcaatccgataccatgaatgtacgaaattgatcataggttataatcctata |
117 |
Q |
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| T |
25011137 |
tcatgatcatacacagtctgcaattagaaagaaaataatcaaccaatgagcaatccgataccatgaatgtacgaaattgat---aggttataatcctata |
25011041 |
T |
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| Q |
118 |
cacttctgatgtaaatatttcttacactgtcaatcagttacaaccttcggataattacgaatagttgacttaatcataattacttctaaagtcacacatg |
217 |
Q |
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| T |
25011040 |
cacttccggtgtaaagattttttacactgtcaatcagttacaaccgtcggataattacaaatatttgacttaatcagaattacttctaaagtcacacata |
25010941 |
T |
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| Q |
218 |
tgttatgatttgttaacagtgtaaacatttgacactggcagttgttaaactcaaattgatatatcagaacatctcagatnnnnnnnnnnngggttccctt |
317 |
Q |
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| T |
25010940 |
cgttgtgatttgttaacagtgtaaacatttgacactggcagttattaaactcaaattgatatatcagaacatctcagataaaaaaaaaatgggttccctt |
25010841 |
T |
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| Q |
318 |
ggagtactattatagaaacaatggttaaaatatataacgaaaggtaaaatatttatgatactgaaaagaaatcagattatacaat |
402 |
Q |
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| T |
25010840 |
ggagtactattaaagaaacaatggttaaaatatataaccaaaggtaaaatatttatgatattgaaaagaaatcagattatacaat |
25010756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 242
Target Start/End: Original strand, 35169998 - 35170056
Alignment:
| Q |
187 |
ttaatcataattacttctaaagtcacacatg---tgttatgatttgttaacagtgtaaa |
242 |
Q |
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| T |
35169998 |
ttaatcataactacttctaaagtcacacatgattggttatgatttgttgacagtgtaaa |
35170056 |
T |
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