View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12737_low_14 (Length: 375)
Name: NF12737_low_14
Description: NF12737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12737_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 28 - 362
Target Start/End: Complemental strand, 38567804 - 38567470
Alignment:
| Q |
28 |
ttaatattgcctcagaccagatgcggaacgacgcatacacgttactttttattgtcttgctgcttatgtgtggcagtgctatgataaacatgtagcctaa |
127 |
Q |
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| T |
38567804 |
ttaattttgcctcagtccagtagtggaacgaaacatacatgttgctttttattttcttgctgcttatgtgtggcagtgctatgataaacatgtagcctaa |
38567705 |
T |
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| Q |
128 |
tttccttcctcatgttgtgtgtattttcaggttgcttcctttactggtgaaaagcaagcagtagctaattacagcaaacatcttgtagatggttacaaat |
227 |
Q |
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| T |
38567704 |
cttccttcctcgtgttgtgtgtattttcaggttgcttcctttactggtgaaaagcaagcagtagctaattacagcaaacatcttgtagatggttacaaat |
38567605 |
T |
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| Q |
228 |
caggagtttttgaaggttttatatctggagtaggtgtaggcacatttatgtttcttatgttcctaggttatgctttggctgtatggtttggtgcaaagat |
327 |
Q |
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| T |
38567604 |
caggagtttttgaaggttttatatctggagtaggtgtaggcacatttatgtttcttatgttcctaggttatgctttggctgtatggtttggtgcaaagat |
38567505 |
T |
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| Q |
328 |
ggtcatggaaaaaggatataatggaggcacagtga |
362 |
Q |
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| T |
38567504 |
ggtcatggaaaaaggatataatggaggcacggtga |
38567470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 142 - 362
Target Start/End: Complemental strand, 38526562 - 38526342
Alignment:
| Q |
142 |
ttgtgtgtattttcaggttgcttcctttactggtgaaaagcaagcagtagctaattacagcaaacatcttgtagatggttacaaatcaggagtttttgaa |
241 |
Q |
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| T |
38526562 |
ttgtgtatattttcaggttgcatcctttactggggaaaagcaagcagtatctagttatagcaaatttcttgtagatgcttacaaatcaggagtttttgaa |
38526463 |
T |
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| Q |
242 |
ggttttatatctggagtaggtgtaggcacatttatgtttcttatgttcctaggttatgctttggctgtatggtttggtgcaaagatggtcatggaaaaag |
341 |
Q |
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| T |
38526462 |
ggtactatagctggagcaggactaggcacagttatgtttgttattttctgtggttatgctttggcagtatggtttggtgcaaagatgatcattgaaaaag |
38526363 |
T |
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| Q |
342 |
gatataatggaggcacagtga |
362 |
Q |
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|||||||||| ||||| |||| |
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| T |
38526362 |
gatataatggtggcaccgtga |
38526342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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