View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12737_low_15 (Length: 346)
Name: NF12737_low_15
Description: NF12737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12737_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 13410332 - 13410622
Alignment:
| Q |
1 |
ccataacctcattctggtatgagattaaaaatgcccgtaaagtattggtagtacacaacttttcctatcataagagagactaaggtctgcccctccaagg |
100 |
Q |
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||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13410332 |
ccatagcctcattctggtatgagattaaaaatgccagtgaagtattggtagtacacaacttttcctatcataagagagactaaggtctgcccctccaagg |
13410431 |
T |
|
| Q |
101 |
gattgcagtgttttgtttacttatggatcattcaaaggctgaaacttgttcctataagaagccagaaaagtagagtatatgaaacatcaaaatttgtgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
13410432 |
aattgcagtgttttgtttacttatggatcattcaaaggctgaaacttgttcatataagaa-ccagaaaagtagagtatctgaaacatcaaaatttgtgtt |
13410530 |
T |
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| Q |
201 |
caaaaggagttaaggtttgggaatagaaatttggaaaaaatcaaaatgcaatgaaattgagaggaaactcaccctgaaggtaatttaaatga |
292 |
Q |
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| T |
13410531 |
caaacgaagttaaggtttgggaatagaaatttggaaaaaatcaaaatgcaatgaaattgagaggaaactcaccctgaaggtaatttaaatga |
13410622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 337
Target Start/End: Original strand, 13410646 - 13410690
Alignment:
| Q |
293 |
tagatggtggcattaaagatggatgtttcaaggaaagtgaacgag |
337 |
Q |
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| T |
13410646 |
tagacggtggcattcaagatggatgtttcaaggaaagtggacgag |
13410690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 3276602 - 3276313
Alignment:
| Q |
1 |
ccataacctcattctggtatgagattaaaaatgcccgtaaagtattggtagtacacaacttttcctatcataagagagactaaggtctgcccctccaagg |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3276602 |
ccatagcctcattctggtatgagattaaaaatgcccgtaaagtattggcagtacacaacttttcctatcataagagagactaaggtctgcccctccaagg |
3276503 |
T |
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| Q |
101 |
gattgcagtgttttgtttacttatggatcattcaaaggctgaaacttgttcctataagaagccagaaaagtagagtatatgaaacatcaaaatttgtgtt |
200 |
Q |
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||||||| ||||||||||||||||||||||||||||| |||||||||||| | |||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
3276502 |
aattgcagcgttttgtttacttatggatcattcaaaggttgaaacttgttcatgtaagaa-ccagaaaagtagagtatctgaaacatcaaaatttgtgtt |
3276404 |
T |
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| Q |
201 |
caaaaggagttaaggtttgggaatagaaatttggaaaaaatcaaaatgcaatgaaattgagaggaaactcaccctgaaggtaatttaaatga |
292 |
Q |
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|||||||||||| |||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3276403 |
caaaaggagttatggtttgggaataaaaatttggaagcaat-aaaatgcaatgaaattgagaggaaactcaccctgaaggtaatttaaatga |
3276313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 293 - 331
Target Start/End: Complemental strand, 3276289 - 3276251
Alignment:
| Q |
293 |
tagatggtggcattaaagatggatgtttcaaggaaagtg |
331 |
Q |
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||||| ||||||||||||||||||||||||||||||||| |
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| T |
3276289 |
tagattgtggcattaaagatggatgtttcaaggaaagtg |
3276251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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