View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12737_low_16 (Length: 343)
Name: NF12737_low_16
Description: NF12737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12737_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 9 - 323
Target Start/End: Complemental strand, 9648141 - 9647823
Alignment:
| Q |
9 |
cactgaagaaggtgattcgcttcgtttcttggagtcccggatataaattttgcacaatgccacaaaaattagatgtgttcacaatgaaagaaataaaata |
108 |
Q |
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| T |
9648141 |
cactgaagaagatgattcgcttcgtttcttggagtcccggatataaattttgcacaatgccacaaaaattagacgtgttcacaatgaaagaaataaaata |
9648042 |
T |
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| Q |
109 |
aataatgaagtggttgaatcgaatgaagcacaaaataatacaccttggtctttctttggcgatgttttatgcagcgagtcatgtttgattagctcagagt |
208 |
Q |
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| T |
9648041 |
aataatgaagtggttgaattgaatgaagcaaacaataatacaccttggtctttctttggcgatgttttatgcagcgagtcatgtttgattagctcagagt |
9647942 |
T |
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| Q |
209 |
ctt----nnnnnnnnnnnnnnnncagtaagccaaatgaattataaaggaatagtaagctatgaaacaccgacaaagatacaaaaacgataataatttgcg |
304 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
9647941 |
cttaaaaaaaaaaaaaaaaaaaacagtaagccaaatgaattataaaggaatagtaagctatgaaacaccgacaaagatacagacacgataataatttgcg |
9647842 |
T |
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| Q |
305 |
aaattgaatgtaatcgtat |
323 |
Q |
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||||||||||||||||||| |
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| T |
9647841 |
aaattgaatgtaatcgtat |
9647823 |
T |
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