View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12737_low_18 (Length: 339)
Name: NF12737_low_18
Description: NF12737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12737_low_18 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 14 - 321
Target Start/End: Complemental strand, 50821953 - 50821646
Alignment:
| Q |
14 |
ttcactgcgcacaaggttggctatgtgggagcattttgggttcaagccaatacaagatgatgatctgaattttcttctccaaggtaacaaccttgacatc |
113 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50821953 |
ttcactacgcacaaggttggctatgtgggagcattttgggttctagccaatacaagatgatgatctgaattttcttctccaaggtaacaaccttgacatc |
50821854 |
T |
|
| Q |
114 |
atagagaattttgatagaaccacattgtgtctcaaaacactgagcagtgaatatgatgatgacgtttaggattcagtttacagtttttgttaaaaagggt |
213 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50821853 |
atagagaattttgatagaaacacattgtgtctcaaaacactgagcagtgaatatgatgatgacgtttaggattcagtttacagtttttgttaaaaagggt |
50821754 |
T |
|
| Q |
214 |
agaaatgataatgctactgatattgctctagttgtctaggctttggatattgtgctagtttcctgttatttcactctctattttcctgttatcctttttg |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50821753 |
agaaatgataatgctactgatattgctctagttgtctaggctttggatattgtgctagtttcctgttatttcactctctattttcctgttatcctttttg |
50821654 |
T |
|
| Q |
314 |
tggtagtt |
321 |
Q |
| |
|
|||||||| |
|
|
| T |
50821653 |
tggtagtt |
50821646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 14 - 321
Target Start/End: Original strand, 50853908 - 50854215
Alignment:
| Q |
14 |
ttcactgcgcacaaggttggctatgtgggagcattttgggttcaagccaatacaagatgatgatctgaattttcttctccaaggtaacaaccttgacatc |
113 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50853908 |
ttcactacgcacaaggttggctatgtgggagcattttgggttctagccaatacaagatgatgatctgaattttcttctccaaggtaacaaccttgacatc |
50854007 |
T |
|
| Q |
114 |
atagagaattttgatagaaccacattgtgtctcaaaacactgagcagtgaatatgatgatgacgtttaggattcagtttacagtttttgttaaaaagggt |
213 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50854008 |
atagagaattttgatagaaacacattgtgtctcaaaacactgagcagtgaatatgatgatgacgtttaggattcagtttacagtttttgttaaaaagggt |
50854107 |
T |
|
| Q |
214 |
agaaatgataatgctactgatattgctctagttgtctaggctttggatattgtgctagtttcctgttatttcactctctattttcctgttatcctttttg |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50854108 |
agaaatgataatgctactgatattgctctagttgtctaggctttggatattgtgctagtttcctgttatttcactctctattttcctgttatcctttttg |
50854207 |
T |
|
| Q |
314 |
tggtagtt |
321 |
Q |
| |
|
|||||||| |
|
|
| T |
50854208 |
tggtagtt |
50854215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University