View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12737_low_19 (Length: 336)

Name: NF12737_low_19
Description: NF12737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12737_low_19
NF12737_low_19
[»] chr2 (13 HSPs)
chr2 (16-329)||(20415238-20415533)
chr2 (16-332)||(26869419-26869723)
chr2 (16-332)||(28377379-28377683)
chr2 (36-317)||(21129262-21129537)
chr2 (36-317)||(28729531-28729806)
chr2 (154-332)||(24423087-24423265)
chr2 (57-317)||(21170070-21170324)
chr2 (130-330)||(22766128-22766328)
chr2 (21-61)||(19310746-19310786)
chr2 (16-134)||(24423270-24423394)
chr2 (238-330)||(22749775-22749867)
chr2 (99-182)||(43084980-43085057)
chr2 (140-188)||(4212218-4212266)
[»] scaffold0272 (2 HSPs)
scaffold0272 (16-332)||(21586-21878)
scaffold0272 (16-332)||(16499-16791)
[»] chr3 (27 HSPs)
chr3 (21-323)||(11214265-11214558)
chr3 (16-332)||(14255498-14255805)
chr3 (16-332)||(4406623-4406930)
chr3 (36-317)||(15191720-15191995)
chr3 (94-323)||(9004050-9004279)
chr3 (46-331)||(9388808-9389093)
chr3 (19-323)||(16668676-16668986)
chr3 (16-329)||(1792107-1792411)
chr3 (36-323)||(17907684-17907964)
chr3 (19-94)||(1056103-1056178)
chr3 (156-325)||(14319187-14319356)
chr3 (36-203)||(7802291-7802452)
chr3 (19-143)||(15224474-15224607)
chr3 (238-330)||(29903746-29903838)
chr3 (238-330)||(29944912-29945004)
chr3 (238-330)||(29994066-29994158)
chr3 (217-325)||(14583743-14583851)
chr3 (238-325)||(1056313-1056400)
chr3 (140-182)||(18486370-18486412)
chr3 (238-331)||(15224301-15224394)
chr3 (19-143)||(29903918-29904051)
chr3 (19-143)||(29945084-29945217)
chr3 (19-143)||(29994238-29994371)
chr3 (140-188)||(37868823-37868871)
chr3 (140-188)||(37877341-37877389)
chr3 (94-140)||(15660518-15660564)
chr3 (140-182)||(19780782-19780824)
[»] chr4 (15 HSPs)
chr4 (16-332)||(15204944-15205248)
chr4 (16-332)||(3375207-3375514)
chr4 (19-323)||(10292951-10293261)
chr4 (144-332)||(16307648-16307836)
chr4 (16-321)||(19573337-19573633)
chr4 (19-323)||(11538277-11538587)
chr4 (238-331)||(11517643-11517736)
chr4 (19-143)||(11517430-11517563)
chr4 (19-94)||(39518672-39518747)
chr4 (16-92)||(16307529-16307605)
chr4 (99-182)||(40468417-40468494)
chr4 (21-61)||(16817104-16817144)
chr4 (140-182)||(17920472-17920514)
chr4 (140-182)||(19952819-19952861)
chr4 (140-182)||(24025908-24025950)
[»] chr5 (9 HSPs)
chr5 (16-332)||(17448935-17449242)
chr5 (36-331)||(19475684-19475973)
chr5 (16-332)||(34060285-34060592)
chr5 (16-332)||(21518837-21519153)
chr5 (56-317)||(23404143-23404398)
chr5 (36-323)||(20560088-20560369)
chr5 (36-323)||(24928346-24928627)
chr5 (238-325)||(21416786-21416873)
chr5 (140-182)||(37732213-37732255)
[»] scaffold1362 (1 HSPs)
scaffold1362 (144-332)||(1762-1950)
[»] chr7 (10 HSPs)
chr7 (16-332)||(25209384-25209679)
chr7 (36-203)||(9162010-9162171)
chr7 (36-265)||(15886072-15886295)
chr7 (36-323)||(10560456-10560737)
chr7 (238-331)||(18421673-18421766)
chr7 (247-323)||(15885993-15886069)
chr7 (19-143)||(18421460-18421593)
chr7 (87-182)||(2714149-2714238)
chr7 (36-182)||(21000905-21001045)
chr7 (140-182)||(9087559-9087601)
[»] scaffold0016 (1 HSPs)
scaffold0016 (16-329)||(194326-194633)
[»] chr8 (9 HSPs)
chr8 (36-323)||(19420662-19420943)
chr8 (140-332)||(23467572-23467764)
chr8 (36-317)||(30322969-30323245)
chr8 (16-121)||(18156106-18156217)
chr8 (36-174)||(19227245-19227377)
chr8 (246-323)||(3835329-3835406)
chr8 (143-183)||(18156209-18156249)
chr8 (280-331)||(25682244-25682295)
chr8 (140-182)||(26113651-26113693)
[»] chr1 (7 HSPs)
chr1 (144-332)||(21163498-21163686)
chr1 (36-323)||(23157571-23157852)
chr1 (36-203)||(26562751-26562912)
chr1 (40-123)||(7681554-7681637)
chr1 (140-185)||(7681633-7681678)
chr1 (99-182)||(19181180-19181257)
chr1 (140-182)||(5648185-5648227)
[»] scaffold0133 (1 HSPs)
scaffold0133 (36-317)||(40594-40869)
[»] chr6 (13 HSPs)
chr6 (144-329)||(18923647-18923832)
chr6 (36-323)||(20038111-20038392)
chr6 (94-331)||(25796187-25796418)
chr6 (231-331)||(25733091-25733191)
chr6 (217-323)||(13915636-13915742)
chr6 (238-331)||(22288450-22288543)
chr6 (19-143)||(13915462-13915577)
chr6 (16-92)||(18923875-18923951)
chr6 (19-143)||(22288237-22288370)
chr6 (19-329)||(25684259-25684578)
chr6 (87-182)||(26867054-26867143)
chr6 (140-182)||(16932700-16932742)
chr6 (154-203)||(9120893-9120942)
[»] scaffold0201 (1 HSPs)
scaffold0201 (94-331)||(789-1026)
[»] scaffold0017 (2 HSPs)
scaffold0017 (93-331)||(177817-178055)
scaffold0017 (21-58)||(51679-51716)
[»] scaffold0474 (1 HSPs)
scaffold0474 (36-323)||(3127-3408)
[»] scaffold0497 (4 HSPs)
scaffold0497 (19-143)||(8056-8186)
scaffold0497 (246-331)||(7883-7968)
scaffold0497 (294-331)||(4626-4663)
scaffold0497 (19-47)||(1854-1882)
[»] scaffold0411 (2 HSPs)
scaffold0411 (156-323)||(669-836)
scaffold0411 (156-323)||(4700-4867)
[»] scaffold0194 (1 HSPs)
scaffold0194 (36-323)||(1903-2184)
[»] scaffold1465 (1 HSPs)
scaffold1465 (218-332)||(36-150)
[»] scaffold0014 (1 HSPs)
scaffold0014 (238-331)||(218962-219055)
[»] scaffold2119 (1 HSPs)
scaffold2119 (81-182)||(132-227)
[»] scaffold0042 (1 HSPs)
scaffold0042 (246-331)||(88-173)
[»] scaffold0022 (1 HSPs)
scaffold0022 (99-182)||(51408-51485)
[»] scaffold0012 (4 HSPs)
scaffold0012 (21-61)||(2635-2675)
scaffold0012 (19-143)||(129965-130098)
scaffold0012 (19-53)||(22316-22350)
scaffold0012 (238-330)||(130178-130270)
[»] scaffold0547 (1 HSPs)
scaffold0547 (21-61)||(3115-3155)
[»] scaffold0099 (1 HSPs)
scaffold0099 (36-182)||(14593-14738)
[»] scaffold1002 (2 HSPs)
scaffold1002 (67-185)||(2057-2169)
scaffold1002 (247-311)||(1931-1995)
[»] scaffold0251 (1 HSPs)
scaffold0251 (144-203)||(24920-24979)
[»] scaffold0085 (1 HSPs)
scaffold0085 (36-139)||(56156-56259)
[»] scaffold1638 (1 HSPs)
scaffold1638 (58-311)||(273-520)


Alignment Details
Target: chr2 (Bit Score: 158; Significance: 5e-84; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 16 - 329
Target Start/End: Complemental strand, 20415533 - 20415238
Alignment:
Q  16 acatcatctgagtcagtggaggatgatgatgagggtgaggatggaaagtctggaatctgaacattgattttagcttttgaaggaatacctgaagaatgag 115  Q
    |||| |||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||    
T  20415533 acattatctaagtcagtcgaggatgatgatgagggtgaagatggaaagtctggaatctgaacattgactctagcttttgtaggaatacctgaagaatgag 20415434  T
Q  116 cttctggacgagcagcttctgatgctggagcttttgatgctggttctgaagaagtagctcctgaagcatgttttcctttcagagcttgtcttaacaggtt 215  Q
    |||||||| |||||||||               ||||||||||||||| |||||   ||||||||| ||| ||||||||||| |||||||||||||||      
T  20415433 cttctggatgagcagctt---------------ttgatgctggttctggagaag---ctcctgaagtatgctttcctttcagggcttgtcttaacagggc 20415352  T
Q  216 tgctccttcgttgatagtttcctcttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgagctgt 315  Q
    ||||||||| |||| |||||||||||||| ||||||||||| ||| ||||||| ||||||||||||| |||||||||||||||||||||||||||| |||    
T  20415351 tgctccttccttgacagtttcctcttccaattcagcagccagagaggcaataaaagctgctttctcaagagcaagctcataccctgctgccttgagttgt 20415252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 16 - 332
Target Start/End: Original strand, 26869419 - 26869723
Alignment:
Q  16 acatcatctgagtcagtggaggatgatgatgagggtgaggatggaaagtctggaatctgaacattgattttagcttttgaaggaatacctgaagaatgag 115  Q
    ||||||| |||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||| |      |||||||||| ||||    
T  26869419 acatcatatgagtcagtggaggatgatgatgagggtgaagatgaaaagtcaggaatctgaacattgattttagctttag------tacctgaagagtgag 26869512  T
Q  116 cttctggacgagcagcttctgatgctggagcttttgatgctggttctgaagaagtagctcctgaagcatgttttcctttcagagcttgtcttaacaggtt 215  Q
    ||||||| |||||||||||||      ||||||||||||||||||||||||  || ||| |||||||||| || ||||||||||||||| ||||||| ||    
T  26869513 cttctggtcgagcagcttctg------gagcttttgatgctggttctgaaggtgttgcttctgaagcatgcttacctttcagagcttgttttaacagatt 26869606  T
Q  216 tgctccttcgttgatagtttcctcttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgagctgt 315  Q
    ||||| ||| || | | ||| |||||| |  |||||||| ||||| |||| |||||| ||| | ||||||||| || |||||||||||||||| ||||||    
T  26869607 tgctcattccttaacaatttactcttcaaactcagcagctaaagaggcaaaaacagcagctgtttcaggagcaggcacataccctgctgcctttagctgt 26869706  T
Q  316 tcatctctctgcttctc 332  Q
    |||||||| ||||||||    
T  26869707 tcatctctttgcttctc 26869723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 16 - 332
Target Start/End: Complemental strand, 28377683 - 28377379
Alignment:
Q  16 acatcatctgagtcagtggaggatgatgatgagggtgaggatggaaagtctggaatctgaacattgattttagcttttg------aaggaatacctgaag 109  Q
    |||||||||||||||||||| || ||||| |||||||| ||||||| ||| |||||||||| ||||||||||||||| |      |||||||||||||||    
T  28377683 acatcatctgagtcagtggaagaagatgaggagggtgaagatggaaggtcaggaatctgaatattgattttagctttaggttgagaaggaatacctgaag 28377584  T
Q  110 aatgagcttctggacgagcagcttctgatgctggagcttttgatgctggttctgaagaagtagctcctgaagcatgttttcctttcagagcttgtcttaa 209  Q
    | ||||||||||    ||||||||||||||||||               |||||||||||   ||||||||| ||| ||||||||||| ||||| || ||    
T  28377583 actgagcttctgatttagcagcttctgatgctgg---------------ttctgaagaag---ctcctgaagtatgctttcctttcagggcttgcctgaa 28377502  T
Q  210 caggtttgctccttcgttgatagtttcctcttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttg 309  Q
    ||| |||||||||||  | | |||||||||||| | |||||||||||| ||||||||  | || | |||||||||||||||||||||||||||||| |||    
T  28377501 cagatttgctccttccctaacagtttcctcttcaagttcagcagccaaggaagcaatttctgcaggtttctcaggagcaagctcataccctgctgctttg 28377402  T
Q  310 agctgttcatctctctgcttctc 332  Q
    |||||||||||| | ||||||||    
T  28377401 agctgttcatctatttgcttctc 28377379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 36 - 317
Target Start/End: Complemental strand, 21129537 - 21129262
Alignment:
Q  36 ggatgatgatgagggtgaggatggaaagtctggaatctgaacattgattttagcttttgaaggaa-tacctgaagaatgagcttctggacgagcagcttc 134  Q
    |||||||||||||||||| ||||||| ||| | ||| |||  ||||| |||||||||| |||||| |||||||||| |||||||||||| ||   |||||    
T  21129537 ggatgatgatgagggtgaagatggaaggtcagtaatttgagtattgactttagctttt-aaggaagtacctgaagagtgagcttctggatgatttgcttc 21129439  T
Q  135 tgatgctggagcttttgatgctggttctgaagaagtagctcctgaagcatgttttcctttcagagcttgtcttaacaggtttgctccttcgttgatagtt 234  Q
    ||      ||||||| |||||||||||||| |||||||||||||||||||| |||||||||| ||||||   |||||  ||| ||||||| | || ||||    
T  21129438 tg------gagctttagatgctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgagataacaattttactccttcctggacagtt 21129345  T
Q  235 tcctcttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgagctgttc 317  Q
    || | ||| | ||||||||| |||| |||||   |||| || |||| ||||||||||||||||||||| |||||||| |||||    
T  21129344 tcttgttcaaattcagcagctaaagcagcaaactcagcagccttcttaggagcaagctcataccctgcagccttgagttgttc 21129262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 36 - 317
Target Start/End: Complemental strand, 28729806 - 28729531
Alignment:
Q  36 ggatgatgatgagggtgaggatggaaagtctggaatctgaacattgattttagcttttgaaggaa-tacctgaagaatgagcttctggacgagcagcttc 134  Q
    |||||||||||||||||| ||||||| ||| |||||||||  ||||| |||||||||| |||||| |||||||||| |||||||||||| |||| |||||    
T  28729806 ggatgatgatgagggtgaagatggaaggtcaggaatctgagtattgactttagctttt-aaggaagtacctgaagagtgagcttctggatgagctgcttc 28729708  T
Q  135 tgatgctggagcttttgatgctggttctgaagaagtagctcctgaagcatgttttcctttcagagcttgtcttaacaggtttgctccttcgttgatagtt 234  Q
    ||      ||||||| |||||||||||||| |||||||||||||||||||| ||  |||||| ||||||   |||||  ||| ||||||| | || ||||    
T  28729707 tg------gagctttagatgctggttctgatgaagtagctcctgaagcatgcttatctttcaaagcttgagataacaattttactccttcctggacagtt 28729614  T
Q  235 tcctcttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgagctgttc 317  Q
    || | ||| | ||||||||| |||| | |||   |||| || ||||||||||||| || ||||||||| |||||||| |||||    
T  28729613 tcttgttcaacttcagcagctaaagcaacaaactcagcagccttctcaggagcaaacttataccctgcagccttgagttgttc 28729531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 154 - 332
Target Start/End: Complemental strand, 24423265 - 24423087
Alignment:
Q  154 gctggttctgaagaagtagctcctgaagcatgttttcctttcagagcttgtcttaacaggtttgctccttcgttgatagtttcctcttccatttcagcag 253  Q
    ||||||||||| |||||||||||||||||||| |||||||||| |||||||  ||  |  ||  ||||||| |||| |||||||||||| || |||| ||    
T  24423265 gctggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgatagaaacttgactccttctttgacagtttcctcttctatctcagaag 24423166  T
Q  254 ccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgagctgttcatctctctgcttctc 332  Q
    ||| || |||||| |||||||||||||||||| |||||||||| ||||| |||||||| |||||||| || ||||||||    
T  24423165 ccagagtagcaattacagctgctttctcaggatcaagctcatatcctgcagccttgagttgttcatccctttgcttctc 24423087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 57 - 317
Target Start/End: Complemental strand, 21170324 - 21170070
Alignment:
Q  57 tggaaagtctggaatctgaacattgattttagcttttgaaggaa-tacctgaagaatgagcttctggacgagcagcttctgatgctggagcttttgatgc 155  Q
    ||||| |||||||||||||  ||||| |||||||||| |||||| ||||| |||||| | |||||||| |||| ||||||||      |||||| || |     
T  21170324 tggaaggtctggaatctgagtattgactttagctttt-aaggaagtacctcaagaattaccttctggatgagctgcttctga------agctttagaagt 21170232  T
Q  156 tggttctgaagaagtagctcctgaagcatgttttcctttcagagcttgtcttaacaggtttgctccttcgttgatagtttcctcttccatttcagcagcc 255  Q
    ||||||||| |||||||||||||||||||| ||  |||||| |||||||  |||||    ||||||||| |||| |||||| | ||||| |||||||||     
T  21170231 tggttctgatgaagtagctcctgaagcatgcttatctttcaaagcttgtgataacaatgctgctccttccttgacagtttcttgttccaattcagcagct 21170132  T
Q  256 aaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgagctgttc 317  Q
    |||| ||| ||  |||| || || ||||||||||||||||||||||| |||||||| |||||    
T  21170131 aaagcagccatctcagcagccttttcaggagcaagctcataccctgcagccttgagttgttc 21170070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 130 - 330
Target Start/End: Original strand, 22766128 - 22766328
Alignment:
Q  130 gcttctgatgctggagcttttgatgctggttctgaagaagtagctcctgaagcatgttttcctttcagagcttgtcttaacaggtttgctccttcgttga 229  Q
    ||||||||||| | ||||| |||||||||||||||||| || ||||||||| |||| ||  |||||||||| ||  ||||||     |||||||| || |    
T  22766128 gcttctgatgcagcagcttctgatgctggttctgaagatgttgctcctgaaacatgcttagctttcagagcctgctttaacaaagcagctccttccttca 22766227  T
Q  230 tagtttcctcttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgagctgttcatctctctgctt 329  Q
     |||||| ||||| ||||| || || ||||||||||| || || |||||||||| | | ||||||||||||||||| |||| ||||||||||| ||||||    
T  22766228 cagtttcttcttcaatttctgcggctaaagaagcaattaccgcagctttctcagcatccagctcataccctgctgctttgacctgttcatctccctgctt 22766327  T
Q  330 c 330  Q
    |    
T  22766328 c 22766328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 19310786 - 19310746
Alignment:
Q  21 atctgagtcagtggaggatgatgatgagggtgaggatggaa 61  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  19310786 atctgagtcagtggaggatgatgatgaggatgaggatggaa 19310746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 134
Target Start/End: Complemental strand, 24423394 - 24423270
Alignment:
Q  16 acatcatctgagtcagtggaggatgatgatg------agggtgaggatggaaagtctggaatctgaacattgattttagcttttgaaggaatacctgaag 109  Q
    |||| |||||| ||||||||||||||||| |      ||||||  ||||||| ||| |||||||||  |||||| ||||||||||| | | | |||||||    
T  24423394 acattatctgattcagtggaggatgatgagggtgaagagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagttcctgaag 24423295  T
Q  110 aatgagcttctggacgagcagcttc 134  Q
    |||| ||||||||| |||| |||||    
T  24423294 aatgtgcttctggatgagctgcttc 24423270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 330
Target Start/End: Complemental strand, 22749867 - 22749775
Alignment:
Q  238 tcttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgagctgttcatctctctgcttc 330  Q
    ||||| ||||||||||||| |||||||||  |||| |||||||||| | | |   |||||||| | || ||||| ||||||||||||||||||    
T  22749867 tcttcaatttcagcagccagagaagcaatttcagcagctttctcagcatccaatacataccctacagctttgagttgttcatctctctgcttc 22749775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 182
Target Start/End: Original strand, 43084980 - 43085057
Alignment:
Q  99 aatacctgaagaatgagcttctggacgagcagcttctgatgctggagcttttgatgctggttctgaagaagtagctcctgaagc 182  Q
    |||||||||||| |||||||||||| || | |||||||      ||||||||||  | ||||||||||||||||||||||||||    
T  43084980 aatacctgaagattgagcttctggatgaactgcttctg------gagcttttgaaacaggttctgaagaagtagctcctgaagc 43085057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 188
Target Start/End: Original strand, 4212218 - 4212266
Alignment:
Q  140 ctggagcttttgatgctggttctgaagaagtagctcctgaagcatgttt 188  Q
    |||||||||||||  |||||||||| ||||| ||||||||||| |||||    
T  4212218 ctggagcttttgaaactggttctgatgaagttgctcctgaagcttgttt 4212266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0272 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 16 - 332
Target Start/End: Original strand, 21586 - 21878
Alignment:
Q  16 acatcatctgagtcagtggaggatgatgatgagggtgaggatggaaagtctggaatctgaacattgattttagcttttgaaggaatacctgaagaatgag 115  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||      ||||||| |||||||    
T  21586 acatcatctgagtcagtggaggatgatgatgagggtgaagatggaaagtcaggaatctgaatattgattttagcttttg------tacctgatgaatgag 21679  T
Q  116 cttctggacgagcagcttctgatgctggagcttttgatgctggttctgaagaagtagctcctgaagcatgttttcctttcagagcttgtcttaacaggtt 215  Q
    ||| |||  |||||||||               |||||||||||||||||||||   ||||||||| ||| ||||||||||| || |||||||| |||      
T  21680 cttttggttgagcagctt---------------ttgatgctggttctgaagaag---ctcctgaagtatgctttcctttcagggcatgtcttaatagggc 21761  T
Q  216 tgctccttcgttgatagtttcctcttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgagctgt 315  Q
    ||||||||| |||| |||||||||||||| || ||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  21762 tgctccttccttgacagtttcctcttccagtttagcagccaaggaagcaatgacagcagctttctcaggagcaagctcataccctgctgccttgagctgt 21861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0272; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 16 - 332
Target Start/End: Original strand, 16499 - 16791
Alignment:
Q  16 acatcatctgagtcagtggaggatgatgatgagggtgaggatggaaagtctggaatctgaacattgattttagcttttgaaggaatacctgaagaatgag 115  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||      ||||||| |||||||    
T  16499 acatcatctgagtcagtggaggatgatgatgagggtgaagatggaaagtcaggaatctgaatattgattttagcttttg------tacctgatgaatgag 16592  T
Q  116 cttctggacgagcagcttctgatgctggagcttttgatgctggttctgaagaagtagctcctgaagcatgttttcctttcagagcttgtcttaacaggtt 215  Q
    ||| |||  |||||||||               |||||||||||||||||||||   ||||||||| ||| ||||||||||| || |||||||| |||      
T  16593 cttttggttgagcagctt---------------ttgatgctggttctgaagaag---ctcctgaagtatgctttcctttcagggcatgtcttaatagggc 16674  T
Q  216 tgctccttcgttgatagtttcctcttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgagctgt 315  Q
    ||||||||| |||| |||||||||||||| || ||||||||| |||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  16675 tgctccttccttgacagtttcctcttccagtttagcagccaaggaagcaatgacagcagctttctcaggagcaagctcataccatgctgccttgagctgt 16774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 21 - 323
Target Start/End: Complemental strand, 11214558 - 11214265
Alignment:
Q  21 atctgagtcagtggaggatgatgatgagggtgaggatggaaagtctggaatctgaacattgattttagcttttgaaggaatacctgaagaatgagcttct 120  Q
    ||||||||||||||||||||||||   |||||  ||||||| ||| |||||||||  ||||| ||||||||| ||||| |||||||||||||||||||||    
T  11214558 atctgagtcagtggaggatgatga---gggtggagatggaaggtcaggaatctgagtattgactttagctttagaagggatacctgaagaatgagcttct 11214462  T
Q  121 ggacgagcagcttctgatgctggagcttttgatgctggttctgaagaagtagctcctgaagcatgttttcctttcagagcttgtcttaacaggtttgctc 220  Q
    ||| |||| ||||||||      ||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||  |||||  ||| |||    
T  11214461 ggatgagctgcttctga------agcttttgatgctggttctgatgaagtagctcctgaagcatgctttcctttcagggcttgtgataacaattttactc 11214368  T
Q  221 cttcgttgatagtttcctcttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgagctgttcatc 320  Q
    |||| |||| || ||||||||||| ||||||||  |||| ||| || ||||| || ||||||||||||||||||||||| ||||||||||||||||||||    
T  11214367 cttccttgacagcttcctcttccaattcagcagttaaagtagctatcacagcagccttctcaggagcaagctcatacccagctgccttgagctgttcatc 11214268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 16 - 332
Target Start/End: Complemental strand, 14255805 - 14255498
Alignment:
Q  16 acatcatctgagtcagtggaggatgatgatgagggtgaggatggaaagtctggaatctgaacattgattttagcttttg------aaggaatacctgaag 109  Q
    |||||||| ||||||||||| |||||||| |||||||| ||||||| ||| |||||||||| ||||| ||||||||| |      |||||||||||||||    
T  14255805 acatcatccgagtcagtggaagatgatgaggagggtgaagatggaaggtcaggaatctgaatattgactttagctttaggttgagaaggaatacctgaag 14255706  T
Q  110 aatgagcttctggacgagcagcttctgatgctggagcttttgatgctggttctgaagaagtagctcctgaagcatgttttcctttcagagcttgtcttaa 209  Q
    |||||||||||||  ||| ||||||||| |||||               ||||||||||||||||||||||||||| |||||||||| || |||||||||    
T  14255705 aatgagcttctggttgagtagcttctgaagctgg---------------ttctgaagaagtagctcctgaagcatgctttcctttcaaagtttgtcttaa 14255621  T
Q  210 caggtttgctccttcgttgatagtttcctcttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttg 309  Q
    ||    ||||||||| |||| |||||| ||| | ||||||||||| || |||| |||  | || ||||||||||||||||||||||||||||||||||||    
T  14255620 caaagctgctccttccttgacagtttcttctgcaatttcagcagctaatgaagaaatttctgcagctttctcaggagcaagctcataccctgctgccttg 14255521  T
Q  310 agctgttcatctctctgcttctc 332  Q
    |||||||||||||| ||||||||    
T  14255520 agctgttcatctctttgcttctc 14255498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 16 - 332
Target Start/End: Original strand, 4406623 - 4406930
Alignment:
Q  16 acatcatctgagtcagtggaggatgatgatgagggtgaggatggaaagtctggaatctgaacattgattttagcttttg------aaggaatacctgaag 109  Q
    |||||||||||||||||||| |||||||| |||||||| ||||||| ||| |||||||||  |||| |||||||||| |      ||||||||||| |||    
T  4406623 acatcatctgagtcagtggaagatgatgaggagggtgaagatggaaggtcaggaatctgagtattgcttttagctttaggttgagaaggaatacctaaag 4406722  T
Q  110 aatgagcttctggacgagcagcttctgatgctggagcttttgatgctggttctgaagaagtagctcctgaagcatgttttcctttcagagcttgtcttaa 209  Q
    |||||||||||||  ||||||||||||| |||||               ||| |||||||||||| ||||||  || |||||||| || ||||| |||||    
T  4406723 aatgagcttctggttgagcagcttctgaagctgg---------------ttcggaagaagtagcttctgaagtgtgctttccttttagggcttgccttaa 4406807  T
Q  210 caggtttgctccttcgttgatagtttcctcttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttg 309  Q
    ||| |||||||||||  | | |||||||||||| | |||||||||||| ||||||||  | || ||||||||||||||||||||||||||||||||||||    
T  4406808 cagatttgctccttccctaacagtttcctcttcaagttcagcagccaaggaagcaatttctgcagctttctcaggagcaagctcataccctgctgccttg 4406907  T
Q  310 agctgttcatctctctgcttctc 332  Q
    |||||||||||||| ||||||||    
T  4406908 agctgttcatctctttgcttctc 4406930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 36 - 317
Target Start/End: Complemental strand, 15191995 - 15191720
Alignment:
Q  36 ggatgatgatgagggtgaggatggaaagtctggaatctgaacattgattttagcttttgaaggaa-tacctgaagaatgagcttctggacgagcagcttc 134  Q
    |||||||||||||||||| ||||||| ||| |||||||||  |||||  ||||||||| |||||| |||||||||| |||||||||||| |||| |||||    
T  15191995 ggatgatgatgagggtgaagatggaaggtcaggaatctgagtattgacattagctttt-aaggaagtacctgaagagtgagcttctggatgagctgcttc 15191897  T
Q  135 tgatgctggagcttttgatgctggttctgaagaagtagctcctgaagcatgttttcctttcagagcttgtcttaacaggtttgctccttcgttgatagtt 234  Q
    |||      |||||| |||||||||||||| |||||||||||||||||||| ||  |||||| ||||||   |||||| ||| |||| || | || ||||    
T  15191896 tga------agctttagatgctggttctgatgaagtagctcctgaagcatgcttgtctttcaaagcttgagataacagttttactccatcctggacagtt 15191803  T
Q  235 tcctcttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgagctgttc 317  Q
    || | ||| | ||||||||| |||| |||||   |||| || |||||||||||||||| ||||||||| |||||||| |||||    
T  15191802 tctttttcaacttcagcagctaaagcagcaaactcagcagccttctcaggagcaagcttataccctgcagccttgagttgttc 15191720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 94 - 323
Target Start/End: Complemental strand, 9004279 - 9004050
Alignment:
Q  94 gaaggaatacctgaagaatgagcttctggacgagcagcttctgatgctggagcttttgatgctggttctgaagaagtagctcctgaagcatgttttcctt 193  Q
    |||||||||||||||| |||||||||||| | || ||||||||||   ||||||| |||||||||||||||||| || ||||||||  |||| ||  |||    
T  9004279 gaaggaatacctgaaggatgagcttctggcctagtagcttctgatttaggagcttctgatgctggttctgaagatgttgctcctgagacatgcttagctt 9004180  T
Q  194 tcagagcttgtcttaacaggtttgctccttcgttgatagtttcctcttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagctc 293  Q
    ||||||| ||  ||||||     ||||||||  | | |||||| ||||| || |||||||||||||||||||| || || |||||||||| | | |||||    
T  9004179 tcagagcctgctttaacaaagcagctccttccctaacagtttcttcttcaatctcagcagccaaagaagcaattaccgcagctttctcagcatccagctc 9004080  T
Q  294 ataccctgctgccttgagctgttcatctct 323  Q
    |||||||||||| |||||||||||||||||    
T  9004079 ataccctgctgctttgagctgttcatctct 9004050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 46 - 331
Target Start/End: Complemental strand, 9389093 - 9388808
Alignment:
Q  46 gagggtgaggatggaaagtctggaatctgaacattgattttagcttttga------aggaatacctgaagaatgagcttctggacgagcagcttctgatg 139  Q
    |||||||| |||| || ||| |||||||||  ||||| ||||||||||||      | ||||||||||||| ||| ||||| || |||| ||||||||      
T  9389093 gagggtgaagatgaaaggtcaggaatctgagtattgactttagcttttgagaaagtatgaatacctgaagattgaccttctagatgagctgcttctga-- 9388996  T
Q  140 ctggagcttttgatgctggttctgaagaagtagctcctgaagcatgttttcctttcagagcttgtcttaacaggtttgctccttcgttgatagtttcctc 239  Q
        |||||| || ||||||||||| |||||||||||||||||||| ||  |||||| |||||||  || ||    | ||||||| |||| |||||| |     
T  9388995 ----agctttagaagctggttctgatgaagtagctcctgaagcatgcttatctttcaaagcttgtgatagcaatgctactccttccttgacagtttcttg 9388900  T
Q  240 ttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgagctgttcatctctctgcttct 331  Q
    ||| | ||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||| || || |||||||    
T  9388899 ttctaattcagcagctaaagaagcaattacagctgctttctcaggggcaagctcataccctgcagccttgagttgttcctccctttgcttct 9388808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 19 - 323
Target Start/End: Complemental strand, 16668986 - 16668676
Alignment:
Q  19 tcatctgagtcagtggaggatgatgatgagggtgaggatggaaagtctggaatctgaacattgattttagcttt------tgaaggaatacctgaagaat 112  Q
    ||||||||||||||||  || |||||||||||||| ||||||| |     | |||||||||||| || ||||||      ||||||||||||||| | ||    
T  16668986 tcatctgagtcagtggctgaagatgatgagggtgaagatggaagggtaaaagtctgaacattgacttgagctttaggatctgaaggaatacctgatggat 16668887  T
Q  113 gagcttctggacgagcagcttctgatgctggagcttttgatgctggttctgaagaagtagctcctgaagcatgttttcctttcagagcttgtcttaacag 212  Q
    |||||||||| | |||||||||||||   ||||||| ||||||||||| ||||||  | ||||||||| | |  ||  |||||||||| ||| |||||||    
T  16668886 gagcttctggtctagcagcttctgatctaggagcttctgatgctggttttgaagattttgctcctgaaacgttcttagctttcagagcctgttttaacag 16668787  T
Q  213 gtttgctccttcgttgatagtttcctcttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgagc 312  Q
        |||||||| || | |||||  ||||| || |||||||| ||||||||||| ||||  |||||||||| | | | ||||||||||||||| ||||||    
T  16668786 agcagctccttccttaacagtttgttcttcaatctcagcagctaaagaagcaattacagaagctttctcagcatccaactcataccctgctgctttgagc 16668687  T
Q  313 tgttcatctct 323  Q
    |||||||||||    
T  16668686 tgttcatctct 16668676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 16 - 329
Target Start/End: Complemental strand, 1792411 - 1792107
Alignment:
Q  16 acatcatctgagtcagtggaggatgatgatgagggtgaggatggaaagtctggaatctgaacattgattttagcttttga------aggaatacctgaag 109  Q
    |||||||||||||||||||| |||||||| |||||||| ||||||| | | |||||||||  ||||||| ||||||| ||      ||||||||||||||    
T  1792411 acatcatctgagtcagtggaagatgatgaggagggtgaagatggaagggcaggaatctgagaattgattctagctttagattgagtaggaatacctgaag 1792312  T
Q  110 aatgagcttctggacgagcagcttctgatgctggagcttttgatgctggttctgaagaagtagctcctgaagcatgttttcctttcagagcttgtcttaa 209  Q
      ||||||||||   ||||||||||||| |||||               |||||||||||||| || ||||||||  |||||||||| |||||| |||||    
T  1792311 gctgagcttctgattgagcagcttctgaggctgg---------------ttctgaagaagtagttcttgaagcattctttcctttcaaagcttgacttaa 1792227  T
Q  210 caggtttgctccttcgttgatagtttcctcttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttg 309  Q
    || |  ||||||||| |||| |||||| ||| | || |||||||| || || |||||  | || ||||| ||||||||||| || |||||||||||||||    
T  1792226 caaggatgctccttccttgacagtttcttctgcaatctcagcagctaatgaggcaatttctgcagctttatcaggagcaagttcgtaccctgctgccttg 1792127  T
Q  310 agctgttcatctctctgctt 329  Q
    ||||||||||| || |||||    
T  1792126 agctgttcatccctttgctt 1792107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 36 - 323
Target Start/End: Complemental strand, 17907964 - 17907684
Alignment:
Q  36 ggatgatgatgagggtgaggatggaaagtctggaatctgaacattgattttagcttttgaaggaatacctgaagaatgagcttctggacgagcagcttct 135  Q
    |||||||||||||||||| ||||||| |||  ||||||||  |||||| ||||||| | ||| | |||||||||| |||||||||||| |||| ||||      
T  17907964 ggatgatgatgagggtgaagatggaaggtcaagaatctgagtattgatattagcttgtaaagaagtacctgaagagtgagcttctggatgagctgctt-- 17907867  T
Q  136 gatgctggagcttttgatgctggttctgaagaagtagctcctgaagcatgttttcctttcagagcttgtcttaacaggtttgctccttcgttgatagttt 235  Q
        || ||||||| |||||||||||||| |||||||||||| |||| || ||  |||||| ||||||   || ||| ||| |||| || | || |||||    
T  17907866 ----ctagagctttagatgctggttctgatgaagtagctcct-aagcctgcttgtctttcaaagcttgagatagcagttttactccctcctggacagttt 17907772  T
Q  236 cctcttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgagctgttcatctct 323  Q
    | | ||| |  |||||||| |||| |  ||   |||| || |||||||||||||||| ||||||||| |||||||| ||||| |||||    
T  17907771 cttgttcaacatcagcagctaaagcaaaaaactcagcagccttctcaggagcaagcttataccctgcagccttgagttgttcttctct 17907684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 1056103 - 1056178
Alignment:
Q  19 tcatctgagtcagtggaggatgatgatgagggtgaggatggaaagtctggaatctgaacattgattttagcttttg 94  Q
    ||||||||||||||||| ||||||||||||||||| |||| |||||    | ||||||||||||||||||||||||    
T  1056103 tcatctgagtcagtggatgatgatgatgagggtgatgatgtaaagttaaaagtctgaacattgattttagcttttg 1056178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 156 - 325
Target Start/End: Complemental strand, 14319356 - 14319187
Alignment:
Q  156 tggttctgaagaagtagctcctgaagcatgttttcctttcagagcttgtcttaacaggtttgctccttcgttgatagtttcctcttccatttcagcagcc 255  Q
    |||||||||||  |  ||| |||||||||  || |||||||| |||||| |||||||   |||| |||| || | | |||||||||| |  | ||||||     
T  14319356 tggttctgaaggtgctgcttctgaagcattcttacctttcagtgcttgttttaacagagctgcttcttccttaacaatttcctcttcaaacttagcagct 14319257  T
Q  256 aaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgagctgttcatctctct 325  Q
    ||||| |||| |||||| |||||||||||| | |  ||||||||| |||| |||||||||||||||||||    
T  14319256 aaagaggcaaaaacagcagctttctcaggatccatttcataccctactgctttgagctgttcatctctct 14319187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 203
Target Start/End: Complemental strand, 7802452 - 7802291
Alignment:
Q  36 ggatgatgatgagggtgaggatggaaagtctggaatctgaacattgattttagcttttgaaggaatacctgaagaatgagcttctggacgagcagcttct 135  Q
    |||||||||||||||||| || ||||  || |||||||||  |||||| | ||||| | ||| | |||||||||  |||||||||||| |||| ||||      
T  7802452 ggatgatgatgagggtgaagaaggaagttcaggaatctgagtattgatatcagcttgtaaagaagtacctgaagtgtgagcttctggatgagctgctt-- 7802355  T
Q  136 gatgctggagcttttgatgctggttctgaagaagtagctcctgaagcatgttttcctttcagagcttg 203  Q
        |||||||||| | |||||||||||| | ||||||||||||||| || ||  |||||| ||||||    
T  7802354 ----ctggagctttaggtgctggttctgatggagtagctcctgaagcctgcttgtctttcaaagcttg 7802291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 15224607 - 15224474
Alignment:
Q  19 tcatctgagtcagtggaggatgatg---atgagggtgaggatggaaagtctggaatctgaacattgattttagcttt------tgaaggaatacctgaag 109  Q
    |||||||||||||||||||||||||   |||||||||| |||| |||||    | | ||||||||||||||||||||      ||||| |||||||||||    
T  15224607 tcatctgagtcagtggaggatgatgatgatgagggtgatgatgtaaagttaaaagtatgaacattgattttagcttttggacctgaagaaatacctgaag 15224508  T
Q  110 aatgagcttctggacgagcagcttctgatgctgg 143  Q
     |||||||||||  | ||||| ||||||||||||    
T  15224507 gatgagcttctgatctagcagtttctgatgctgg 15224474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 238 - 330
Target Start/End: Complemental strand, 29903838 - 29903746
Alignment:
Q  238 tcttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgagctgttcatctctctgcttc 330  Q
    ||||| ||||||||||||| || ||||||  |||| |||||||||| | | ||  |||||||||| || ||||||||||||||||||||||||    
T  29903838 tcttcaatttcagcagccagagcagcaatctcagcagctttctcagcatccagtacataccctgcagctttgagctgttcatctctctgcttc 29903746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 238 - 330
Target Start/End: Complemental strand, 29945004 - 29944912
Alignment:
Q  238 tcttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgagctgttcatctctctgcttc 330  Q
    ||||| ||||||||||||| || ||||||  |||| |||||||||| | | ||  |||||||||| || ||||||||||||||||||||||||    
T  29945004 tcttcaatttcagcagccagagcagcaatctcagcagctttctcagcatccagtacataccctgcagctttgagctgttcatctctctgcttc 29944912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 238 - 330
Target Start/End: Complemental strand, 29994158 - 29994066
Alignment:
Q  238 tcttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgagctgttcatctctctgcttc 330  Q
    ||||| ||||||||||||| || ||||||  |||| |||||||||| | | ||  |||||||||| || ||||||||||||||||||||||||    
T  29994158 tcttcaatttcagcagccagagcagcaatctcagcagctttctcagcatccagtacataccctgcagctttgagctgttcatctctctgcttc 29994066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 217 - 325
Target Start/End: Original strand, 14583743 - 14583851
Alignment:
Q  217 gctccttcgttgatagtttcctcttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgagctgtt 316  Q
    |||||||| |||| |||||||||||||| ||||||||| || ||   ||||| ||| |||||||||| | | | ||||||||||||||| || || | ||    
T  14583743 gctccttccttgacagtttcctcttccaattcagcagctaatgagttaataatagcagctttctcagcatccacctcataccctgctgctttaagatttt 14583842  T
Q  317 catctctct 325  Q
    |||||||||    
T  14583843 catctctct 14583851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 325
Target Start/End: Original strand, 1056313 - 1056400
Alignment:
Q  238 tcttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgagctgttcatctctct 325  Q
    ||||| || |||||||| ||||||||||| ||| | ||||| |||| | | || |||||||||||||| ||||| |||||||||||||    
T  1056313 tcttcaatctcagcagctaaagaagcaatcacaacagctttatcagcatccagttcataccctgctgctttgagttgttcatctctct 1056400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 18486370 - 18486412
Alignment:
Q  140 ctggagcttttgatgctggttctgaagaagtagctcctgaagc 182  Q
    ||||||||| ||||||||||||||||||||| |||||||||||    
T  18486370 ctggagcttctgatgctggttctgaagaagttgctcctgaagc 18486412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 331
Target Start/End: Complemental strand, 15224394 - 15224301
Alignment:
Q  238 tcttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgagctgttcatctctctgcttct 331  Q
    ||||| ||||||||||| |  |||||||| ||| | |||||||||  | | || | |||||||||||| ||||||||||||||||| |||||||    
T  15224394 tcttcaatttcagcagctagtgaagcaatcacaacagctttctcaacatccagattataccctgctgctttgagctgttcatctctttgcttct 15224301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 29904051 - 29903918
Alignment:
Q  19 tcatctgagtcagtggaggatgatga---tgagggtgaggatggaaagtctggaatctgaacattgattttagcttt------tgaaggaatacctgaag 109  Q
    |||||||||| |||||| ||||||||   ||||||||| ||||||| ||  | | |||||||||||||| |||||||      ||||| |||||||||||    
T  29904051 tcatctgagttagtggaagatgatgaggatgagggtgatgatggaaggttagaagtctgaacattgattctagcttttggatctgaagaaatacctgaag 29903952  T
Q  110 aatgagcttctggacgagcagcttctgatgctgg 143  Q
     | |||||||||  | || |||||||||||||||    
T  29903951 gacgagcttctgatctagtagcttctgatgctgg 29903918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 29945217 - 29945084
Alignment:
Q  19 tcatctgagtcagtggaggatgatga---tgagggtgaggatggaaagtctggaatctgaacattgattttagcttt------tgaaggaatacctgaag 109  Q
    |||||||||| |||||| ||||||||   ||||||||| ||||||| ||  | | |||||||||||||| |||||||      ||||| |||||||||||    
T  29945217 tcatctgagttagtggaagatgatgaggatgagggtgatgatggaaggttagaagtctgaacattgattctagcttttggatctgaagaaatacctgaag 29945118  T
Q  110 aatgagcttctggacgagcagcttctgatgctgg 143  Q
     | |||||||||  | || |||||||||||||||    
T  29945117 gacgagcttctgatctagtagcttctgatgctgg 29945084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 29994371 - 29994238
Alignment:
Q  19 tcatctgagtcagtggaggatgatga---tgagggtgaggatggaaagtctggaatctgaacattgattttagcttt------tgaaggaatacctgaag 109  Q
    |||||||||| |||||| ||||||||   ||||||||| ||||||| ||  | | |||||||||||||| |||||||      ||||| |||||||||||    
T  29994371 tcatctgagttagtggaagatgatgaggatgagggtgatgatggaaggttagaagtctgaacattgattctagcttttggatctgaagaaatacctgaag 29994272  T
Q  110 aatgagcttctggacgagcagcttctgatgctgg 143  Q
     | |||||||||  | || |||||||||||||||    
T  29994271 gacgagcttctgatctagtagcttctgatgctgg 29994238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 188
Target Start/End: Original strand, 37868823 - 37868871
Alignment:
Q  140 ctggagcttttgatgctggttctgaagaagtagctcctgaagcatgttt 188  Q
    |||||||||||||  | |||||||||||||||||||||||||| |||||    
T  37868823 ctggagcttttgaaacaggttctgaagaagtagctcctgaagcttgttt 37868871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 188
Target Start/End: Original strand, 37877341 - 37877389
Alignment:
Q  140 ctggagcttttgatgctggttctgaagaagtagctcctgaagcatgttt 188  Q
    |||||||||||||  | |||||||||||||||||||||||||| |||||    
T  37877341 ctggagcttttgaaacaggttctgaagaagtagctcctgaagcttgttt 37877389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 15660564 - 15660518
Alignment:
Q  94 gaaggaatacctgaagaatgagcttctggacgagcagcttctgatgc 140  Q
    |||||| |||||||||||||||||||||  || ||||||||||||||    
T  15660564 gaaggattacctgaagaatgagcttctgatcgtgcagcttctgatgc 15660518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 19780782 - 19780824
Alignment:
Q  140 ctggagcttttgatgctggttctgaagaagtagctcctgaagc 182  Q
    |||||||||||||  |||||||||| |||||||||||||||||    
T  19780782 ctggagcttttgaaactggttctgatgaagtagctcctgaagc 19780824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 139; Significance: 1e-72; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 16 - 332
Target Start/End: Complemental strand, 15205248 - 15204944
Alignment:
Q  16 acatcatctgagtcagtggaggatgatgatgagggtgaggatggaaagtctggaatctgaacattgattttagcttttgaaggaatacctgaagaatgag 115  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||| |      |||||||||| ||||    
T  15205248 acatcatctgagtcagtggaggatgatgatgagggtgaagatggaaagtcaggaatctaaacattgattttagctttag------tacctgaagagtgag 15205155  T
Q  116 cttctggacgagcagcttctgatgctggagcttttgatgctggttctgaagaagtagctcctgaagcatgttttcctttcagagcttgtcttaacaggtt 215  Q
    ||||||| |||||||||||||      ||||||||||| ||||||||||||   | ||| |||||||||| || ||||||||||||||| ||||||| ||    
T  15205154 cttctggtcgagcagcttctg------gagcttttgatactggttctgaaggtattgcttctgaagcatgcttacctttcagagcttgttttaacagatt 15205061  T
Q  216 tgctccttcgttgatagtttcctcttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgagctgt 315  Q
    ||||||||| || | | |||||||||| |  |||||||| ||||| |||| |||||| ||| | ||||||| | || |||||||||||||||||||||||    
T  15205060 tgctccttccttaacaatttcctcttcaaactcagcagctaaagaggcaaaaacagcagctgtttcaggagtaggcacataccctgctgccttgagctgt 15204961  T
Q  316 tcatctctctgcttctc 332  Q
    |||||||| ||||||||    
T  15204960 tcatctctttgcttctc 15204944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 16 - 332
Target Start/End: Original strand, 3375207 - 3375514
Alignment:
Q  16 acatcatctgagtcagtggaggatgatgatgagggtgaggatggaaagtctggaatctgaacattgattttagcttt----tga--aggaatacctgaag 109  Q
    |||| |||||||| ||||| |||||||||||||||||||||||||| ||||||||| |||  |||||||||||||||    |||  ||||||||||||||    
T  3375207 acattatctgagttagtggcggatgatgatgagggtgaggatggaaggtctggaatatgagtattgattttagctttaggttgagcaggaatacctgaag 3375306  T
Q  110 aatgagcttctggacgagcagcttctgatgctggagcttttgatgctggttctgaagaagtagctcctgaagcatgttttcctttcagagcttgtcttaa 209  Q
    ||||||||| |||  ||||||||||||| ||||               |||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  3375307 aatgagcttttggttgagcagcttctgaagctg---------------gttctgaagaagtagctcctgaagcatgctttcctttcaaagcttgtcttaa 3375391  T
Q  210 caggtttgctccttcgttgatagtttcctcttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttg 309  Q
    || |  || |||||| |||| | |||| ||| | || |||||||| | |||||||||  |||| |||||||||||||||| ||||||||||||||||||     
T  3375392 caaggctgttccttccttgacaatttcttctgcaatctcagcagctagagaagcaatttcagcagctttctcaggagcaacctcataccctgctgccttc 3375491  T
Q  310 agctgttcatctctctgcttctc 332  Q
    | |||||||||||| ||||||||    
T  3375492 aactgttcatctctttgcttctc 3375514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 19 - 323
Target Start/End: Original strand, 10292951 - 10293261
Alignment:
Q  19 tcatctgagtcagtggaggatgatgatgagggtgaggatggaaagtctggaa-tctgaacattgattttagcttt------tgaaggaatacctgaagaa 111  Q
    ||||||||||||||||  || |||||||||||||| ||||||| || | ||| |||||| ||||| |  ||||||      ||||||||||||||||| |    
T  10292951 tcatctgagtcagtggctgaagatgatgagggtgaagatggaa-gtgtagaagtctgaatattgactgaagctttaggaactgaaggaatacctgaagga 10293049  T
Q  112 tgagcttctggacgagcagcttctgatgctggagcttttgatgctggttctgaagaagtagctcctgaagcatgttttcctttcagagcttgtcttaaca 211  Q
    ||||||| ||| | || ||||||||||   ||||||| |||||  ||||||||||  |  ||||||||| |||| ||  |||||||||| ||| ||||||    
T  10293050 tgagcttttggtctagtagcttctgatctaggagcttctgatgtaggttctgaaggtgatgctcctgaaacatgcttagctttcagagcctgttttaaca 10293149  T
Q  212 ggtttgctccttcgttgatagtttcctcttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgag 311  Q
         |||||||| || ||||||| |||||||| ||||||||| ||||||||||||||||| |||||||||| | | | ||||||||||||||| |||||    
T  10293150 aagcagctccttccttaatagtttgctcttccaattcagcagctaaagaagcaataacagcagctttctcagcatccaactcataccctgctgctttgag 10293249  T
Q  312 ctgttcatctct 323  Q
    ||||||||||||    
T  10293250 ctgttcatctct 10293261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 144 - 332
Target Start/End: Original strand, 16307648 - 16307836
Alignment:
Q  144 agcttttgatgctggttctgaagaagtagctcctgaagcatgttttcctttcagagcttgtcttaacaggtttgctccttcgttgatagtttcctcttcc 243  Q
    ||||| ||| |||||||||||||||||||||||||||||||  |||||||||| |||||| ||||||| |  ||||||||| |||| |||||| ||| |     
T  16307648 agcttctgaagctggttctgaagaagtagctcctgaagcattctttcctttcaaagcttgacttaacaaggctgctccttccttgacagtttcttctgca 16307747  T
Q  244 atttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgagctgttcatctctctgcttctc 332  Q
    || |||||||| || || |||||  | || ||||| |||||||||||||||||||||||||||||||| ||||||||||  ||||||||    
T  16307748 atctcagcagctaacgaggcaatttctgcagctttttcaggagcaagctcataccctgctgccttgagttgttcatctcgttgcttctc 16307836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 16 - 321
Target Start/End: Original strand, 19573337 - 19573633
Alignment:
Q  16 acatcatctgagtcagtggaggatgatgatgagggtgaggatggaaagtctggaatctgaacattgattttagcttttg------aaggaatacctgaag 109  Q
    |||||||||||||||||||| |||||||| |||||||| ||||||| ||  |||||||||  ||||||| ||||||| |      |||||||||||||||    
T  19573337 acatcatctgagtcagtggaagatgatgaggagggtgaagatggaaggttaggaatctgagtattgattctagctttaggttgagaaggaatacctgaag 19573436  T
Q  110 aatgagcttctggacgagcagcttctgatgctggagcttttgatgctggttctgaagaagtagctcctgaagcatgttttcctttcagagcttgtcttaa 209  Q
      ||||||||||   ||||||||| ||| ||||               |||||||||||||||||||||||||||  |||||||||| |||||| |||||    
T  19573437 gctgagcttctgattgagcagcttatgaagctg---------------gttctgaagaagtagctcctgaagcattctttcctttcaaagcttgacttaa 19573521  T
Q  210 caggtttgctccttcgttgatagtttcctcttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttg 309  Q
    || |  ||||||||| |||| |||||| ||| | || ||||||||||| ||||||||    || ||||||||| |||||||||| ||||||||||||||     
T  19573522 caaggctgctccttccttgacagtttcttctgcaatctcagcagccaatgaagcaatttttgcagctttctcaagagcaagctcttaccctgctgccttt 19573621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 19 - 323
Target Start/End: Original strand, 11538277 - 11538587
Alignment:
Q  19 tcatctgagtcagtggaggatgatgatgagggtgaggatggaaagtctggaatctgaacattgattttagcttt------tgaaggaatacctgaagaat 112  Q
    ||||||||||||||||| || |||||||||||||| ||||||| |     | |||||||||||| |  ||||||      ||||||||||||||||| ||    
T  11538277 tcatctgagtcagtggaagaggatgatgagggtgaagatggaagggaaaaagtctgaacattgactgaagctttaggaactgaaggaatacctgaaggat 11538376  T
Q  113 gagcttctggacgagcagcttctgatgctggagcttttgatgctggttctgaagaagtagctcctgaagcatgttttcctttcagagcttgtcttaacag 212  Q
    |||||||||| | || ||||||||||   ||||||| ||||||||||| |||||  || ||||||||| |||| ||  |||||||||| ||| ||||||     
T  11538377 gagcttctggtctagtagcttctgatctaggagcttctgatgctggttttgaaggtgttgctcctgaaacatgcttagctttcagagcctgttttaacaa 11538476  T
Q  213 gtttgctccttcgttgatagtttcctcttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgagc 312  Q
        |||||||| || | |||||  ||||| ||||||||||| | ||||||||| ||||| | |||||||| | | || |||||||||||||| ||||||    
T  11538477 agcagctccttccttaacagtttgttcttcaatttcagcagcaagagaagcaatcacagcagttttctcagcatccagttcataccctgctgctttgagc 11538576  T
Q  313 tgttcatctct 323  Q
    | |||||||||    
T  11538577 ttttcatctct 11538587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 238 - 331
Target Start/End: Original strand, 11517643 - 11517736
Alignment:
Q  238 tcttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgagctgttcatctctctgcttct 331  Q
    ||||| ||||||||||| | ||||||||| ||||| |||||||||| | | || | |||||||||||| ||||||||||||||||||| |||||    
T  11517643 tcttcaatttcagcagctagagaagcaatcacagcagctttctcagcatccagattataccctgctgctttgagctgttcatctctcttcttct 11517736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 11517430 - 11517563
Alignment:
Q  19 tcatctgagtcagtggaggatgatgatga---gggtgaggatggaaagtctggaatctgaacattgattttagcttt------tgaaggaatacctgaag 109  Q
    |||||||||||||||||||||||||||||   |||||| |||| |||||    | ||||||||||||||||||||||      ||||| |||||||||||    
T  11517430 tcatctgagtcagtggaggatgatgatgatgagggtgatgatgtaaagttaaaagtctgaacattgattttagcttttggacctgaagaaatacctgaag 11517529  T
Q  110 aatgagcttctggacgagcagcttctgatgctgg 143  Q
     |||||||||||  | || |||||||||||||||    
T  11517530 gatgagcttctgatctagtagcttctgatgctgg 11517563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 39518747 - 39518672
Alignment:
Q  19 tcatctgagtcagtggaggatgatgatgagggtgaggatggaaagtctggaatctgaacattgattttagcttttg 94  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||    | ||||||||||||| ||||||||||    
T  39518747 tcatctgagtcagtggaagatgatgatgagggtgatgatggaaagttaaaagtctgaacattgatgttagcttttg 39518672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 16307529 - 16307605
Alignment:
Q  16 acatcatctgagtcagtggaggatgatgatgagggtgaggatggaaagtctggaatctgaacattgattttagcttt 92  Q
    |||||||||||||||||| | |||||||| |||||||| ||||||| ||| |||||||||  ||||||| |||||||    
T  16307529 acatcatctgagtcagtgcaagatgatgaggagggtgaagatggaaggtcaggaatctgagtattgattctagcttt 16307605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 99 - 182
Target Start/End: Complemental strand, 40468494 - 40468417
Alignment:
Q  99 aatacctgaagaatgagcttctggacgagcagcttctgatgctggagcttttgatgctggttctgaagaagtagctcctgaagc 182  Q
    |||||||||||| |||||||||||| |||| |||||||      |||||||||| || |||||||||||||| |||||||||||    
T  40468494 aatacctgaagagtgagcttctggatgagctgcttctg------gagcttttgaagcaggttctgaagaagtggctcctgaagc 40468417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 16817144 - 16817104
Alignment:
Q  21 atctgagtcagtggaggatgatgatgagggtgaggatggaa 61  Q
    |||||||||| |||||||||||||||||||||| |||||||    
T  16817144 atctgagtcaatggaggatgatgatgagggtgaagatggaa 16817104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 17920472 - 17920514
Alignment:
Q  140 ctggagcttttgatgctggttctgaagaagtagctcctgaagc 182  Q
    ||||||||||||| ||||||||||| ||||| |||||||||||    
T  17920472 ctggagcttttgaagctggttctgatgaagttgctcctgaagc 17920514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 182
Target Start/End: Complemental strand, 19952861 - 19952819
Alignment:
Q  140 ctggagcttttgatgctggttctgaagaagtagctcctgaagc 182  Q
    |||||||||||||  |||||||||| |||||||||||||||||    
T  19952861 ctggagcttttgaaactggttctgatgaagtagctcctgaagc 19952819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 182
Target Start/End: Complemental strand, 24025950 - 24025908
Alignment:
Q  140 ctggagcttttgatgctggttctgaagaagtagctcctgaagc 182  Q
    ||||||||||||| ||||||||||| ||||| |||||||||||    
T  24025950 ctggagcttttgaagctggttctgatgaagttgctcctgaagc 24025908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 118; Significance: 4e-60; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 16 - 332
Target Start/End: Original strand, 17448935 - 17449242
Alignment:
Q  16 acatcatctgagtcagtggaggatgatgatgagggtgaggatggaaagtctggaatctgaacattgattttagcttttg------aaggaatacctgaag 109  Q
    |||||||||||||||||||| |||||||| |||||||||||||||| |||  ||||||||  ||||||||||||||| |      |||||||||||||||    
T  17448935 acatcatctgagtcagtggaagatgatgaggagggtgaggatggaaggtcaagaatctgagtattgattttagctttaggttgagaaggaatacctgaag 17449034  T
Q  110 aatgagcttctggacgagcagcttctgatgctggagcttttgatgctggttctgaagaagtagctcctgaagcatgttttcctttcagagcttgtcttaa 209  Q
    |||||||||||||  ||||||||||||| |||||               |||||||||||||||| ||||||  || ||||||||| | ||||| |||||    
T  17449035 aatgagcttctggttgagcagcttctgaagctgg---------------ttctgaagaagtagcttctgaagtgtgctttcctttccgggcttgccttaa 17449119  T
Q  210 caggtttgctccttcgttgatagtttcctcttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttg 309  Q
    ||  |||||||||||  | | |||||||||||| | |||||||||||| ||||||||  | ||  |||||||||||||||||||||||||||||||||||    
T  17449120 catatttgctccttccctaacagtttcctcttcaagttcagcagccaaggaagcaatttctgcaactttctcaggagcaagctcataccctgctgccttg 17449219  T
Q  310 agctgttcatctctctgcttctc 332  Q
    |||||||||||||| ||||||||    
T  17449220 agctgttcatctctttgcttctc 17449242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 36 - 331
Target Start/End: Complemental strand, 19475973 - 19475684
Alignment:
Q  36 ggatgatgatgagggtgaggatggaaagtctggaatctgaacattgattttagcttttgaaggaatacctgaagaatgagcttctggacgagcagcttct 135  Q
    |||||||||||||||||| ||||||| ||| |||||||||  |||||| ||||||||||| | | ||||||||||||||||||||| | || | ||||||    
T  19475973 ggatgatgatgagggtgaagatggaaggtcaggaatctgattattgatcttagcttttgaggaagtacctgaagaatgagcttctgaatgaactgcttct 19475874  T
Q  136 gatgctggagcttttgatgctggttctgaagaagtagctcctgaagcatgttttcctttcagagcttgtcttaacaggtttgctccttcgttgatagttt 235  Q
    ||      |||||| || |||||||||||||||||||||||||||||||| |||||||||| |||||||  |||||    | ||||||| |||| |||||    
T  19475873 ga------agctttggaagctggttctgaagaagtagctcctgaagcatgctttcctttcaaagcttgtgataacaatgctactccttccttgacagttt 19475780  T
Q  236 cctcttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgagctgttcatctctctgcttct 331  Q
    | ||||| | ||||||||| |||| |||||| ||| |||||||||||||| |||||||||| ||||| |||||||| |||||||| || |||||||    
T  19475779 cttcttctaattcagcagctaaagtagcaattacaactgctttctcaggatcaagctcataacctgcagccttgagttgttcatccctttgcttct 19475684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 16 - 332
Target Start/End: Complemental strand, 34060592 - 34060285
Alignment:
Q  16 acatcatctgagtcagtggaggatgatgatgagggtgaggatggaaagtctggaatctgaacattgattttagcttttg------aaggaatacctgaag 109  Q
    |||||||||||||||||||| |||||||| |||||||| |||| || ||| |||||||||  ||||||| ||||||| |      |||||||||||||||    
T  34060592 acatcatctgagtcagtggaagatgatgaggagggtgaagatgaaaggtcaggaatctgagtattgattctagctttaggttcagaaggaatacctgaag 34060493  T
Q  110 aatgagcttctggacgagcagcttctgatgctggagcttttgatgctggttctgaagaagtagctcctgaagcatgttttcctttcagagcttgtcttaa 209  Q
      ||||||||||   ||||||||||||| |||||               |||||||||||||| |||||||||||  |||||||||| |||||| |||||    
T  34060492 gctgagcttctgattgagcagcttctgaagctgg---------------ttctgaagaagtagttcctgaagcattctttcctttcaaagcttgacttaa 34060408  T
Q  210 caggtttgctccttcgttgatagtttcctcttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttg 309  Q
    || |  ||||||||| |||| |||||| ||| | || ||||||||||| ||||||||  | || |||||||||||||||| |||||||||||||||||||    
T  34060407 caaggctgctccttccttgacagtttcttctgctatctcagcagccaatgaagcaatttctgcagctttctcaggagcaaactcataccctgctgccttg 34060308  T
Q  310 agctgttcatctctctgcttctc 332  Q
    |||||||||||||  ||||||||    
T  34060307 agctgttcatctcgttgcttctc 34060285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 16 - 332
Target Start/End: Complemental strand, 21519153 - 21518837
Alignment:
Q  16 acatcatctgagtcagtggaggatgatgatg------agggtgaggatggaaagtctggaatctgaacattgattttagcttttgaaggaatacctgaag 109  Q
    |||| |||||| ||||||||||||||||| |      ||||||  ||||||| ||| |||||||||  |||||| ||||||||||| | | | |||||||    
T  21519153 acattatctgattcagtggaggatgatgaggttgaagagggtggagatggaaggtcaggaatctgattattgatcttagcttttgaggaagttcctgaag 21519054  T
Q  110 aatgagcttctggacgagcagcttctgatgctggagcttttgatgctggttctgaagaagtagctcctgaagcatgttttcctttcagagcttgtcttaa 209  Q
    ||||  |||||||| |||| ||||||||      |||||| || ||||||||||| |||||||||||| ||||||| |||||||||| |||||||   |     
T  21519053 aatgtacttctggatgagctgcttctga------agctttagaagctggttctgatgaagtagctcctaaagcatgctttcctttcaaagcttgtgaaag 21518960  T
Q  210 caggtttgctccttcgttgatagtttcctcttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttg 309  Q
    ||  ||  ||||||| |||| |||||||||| | || |||| ||||  || |||||| |||||||||||||||||| |||||||||| ||||| ||||||    
T  21518959 caacttgactccttccttgacagtttcctctactatctcagaagccggagtagcaattacagctgctttctcaggatcaagctcatatcctgcagccttg 21518860  T
Q  310 agctgttcatctctctgcttctc 332  Q
    || |||||||| || ||||||||    
T  21518859 agttgttcatccctttgcttctc 21518837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 56 - 317
Target Start/End: Complemental strand, 23404398 - 23404143
Alignment:
Q  56 atggaaagtctggaatctgaacattgattttagcttttgaaggaatacctgaagaatgagcttctggacgagcagcttctgatgctggagcttttgatgc 155  Q
    |||||| ||| |||||||||| |||||| ||||||||||| | | ||||||| ||||||||||||||| |||| |||||||      ||||||| |||||    
T  23404398 atggaaggtcaggaatctgaatattgatcttagcttttgaggaagtacctgatgaatgagcttctggatgagctgcttctg------gagctttagatgc 23404305  T
Q  156 tggttctgaagaagtagctcctgaagcatgttttcctttcagagcttgtcttaacaggtttgctccttcgttgatagtttcctcttccatttcagcagcc 255  Q
    ||||||||| |||||||||||||||||||| |||||||||| |||||||  |||||    | ||||||| |||| ||| || | ||| |  ||||||||     
T  23404304 tggttctgatgaagtagctcctgaagcatgctttcctttcaaagcttgtgataacaatgctactccttccttgacagtctcttgttctaactcagcagct 23404205  T
Q  256 aaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgagctgttc 317  Q
    |||| ||| ||  || | || || ||||||||||||||||||||||| |||||||| |||||    
T  23404204 aaagtagccatctcaacagccttttcaggagcaagctcataccctgcagccttgagttgttc 23404143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 36 - 323
Target Start/End: Complemental strand, 20560369 - 20560088
Alignment:
Q  36 ggatgatgatgagggtgaggatggaaagtctggaatctgaacattgattttagcttttgaaggaatacctgaagaatgagcttctggacgagcagcttct 135  Q
    |||||||||||||||||| ||||||| ||| |||||||||  |||||  ||||||||| ||| | |||||||||| ||||||||||||  ||| ||||||    
T  20560369 ggatgatgatgagggtgaagatggaaggtcaggaatctgagtattgacattagcttttaaagaagtacctgaagagtgagcttctggataagctgcttct 20560270  T
Q  136 gatgctggagcttttgatgctggttctgaagaagtagctcctgaagcatgttttcctttcagagcttgtcttaacaggtttgctccttcgttgatagttt 235  Q
    |      || |||| |||||||||||||| ||||||||||||||||| || ||  |||||| ||||||   |||||| ||| |||| || | || |||||    
T  20560269 g------gatctttagatgctggttctgatgaagtagctcctgaagcctgcttgtctttcaaagcttgagataacagttttactccctcctggacagttt 20560176  T
Q  236 cctcttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgagctgttcatctct 323  Q
    | | ||| |  ||||||||||||| |||||   |||| || |||||||||||||||| |||||||||  ||||||| ||||| |||||    
T  20560175 ctttttcaacctcagcagccaaagcagcaaactcagcagccttctcaggagcaagcttataccctgcaaccttgagttgttcctctct 20560088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 36 - 323
Target Start/End: Original strand, 24928346 - 24928627
Alignment:
Q  36 ggatgatgatgagggtgaggatggaaagtctggaatctgaacattgattttagcttttgaaggaatacctgaagaatgagcttctggacgagcagcttct 135  Q
    |||||||||||||||||| ||||||| ||| |||||||||  |||||| ||||||| | ||| | |||||||||| |||||||||||| |||| ||||      
T  24928346 ggatgatgatgagggtgaagatggaaggtcaggaatctgagtattgatattagcttgtaaagaagtacctgaagagtgagcttctggatgagctgctt-- 24928443  T
Q  136 gatgctggagcttttgatgctggttctgaagaagtagctcctgaagcatgttttcctttcagagcttgtcttaacaggtttgctccttcgttgatagttt 235  Q
        |||||||||| |||||||||||||| ||||||||||||||||| || ||  |||||| ||||||   || ||| ||| |||| |  | || |||||    
T  24928444 ----ctggagctttagatgctggttctgatgaagtagctcctgaagcctgcttgtctttcaaagcttgagatagcagttttactcccttctggacagttt 24928539  T
Q  236 cctcttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgagctgttcatctct 323  Q
    | | ||| | ||||||||| |||| | |||   |||| || |||||||||||||||| ||||| |||  ||||||| ||||| |||||    
T  24928540 cttgttcaacttcagcagctaaagcaacaaactcagcagccttctcaggagcaagcttataccatgcaaccttgagttgttcctctct 24928627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 325
Target Start/End: Original strand, 21416786 - 21416873
Alignment:
Q  238 tcttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgagctgttcatctctct 325  Q
    ||||| ||||||||||| | ||||||||| ||| | ||||||| || | | || | |||||||||||| |||||||||||||||||||    
T  21416786 tcttcaatttcagcagctagagaagcaatcacaacagctttcttagcatccagattataccctgctgctttgagctgttcatctctct 21416873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 37732213 - 37732255
Alignment:
Q  140 ctggagcttttgatgctggttctgaagaagtagctcctgaagc 182  Q
    ||||||||| ||||||||||||||| ||||| |||||||||||    
T  37732213 ctggagcttctgatgctggttctgatgaagttgctcctgaagc 37732255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1362 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: scaffold1362
Description:

Target: scaffold1362; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 144 - 332
Target Start/End: Complemental strand, 1950 - 1762
Alignment:
Q  144 agcttttgatgctggttctgaagaagtagctcctgaagcatgttttcctttcagagcttgtcttaacaggtttgctccttcgttgatagtttcctcttcc 243  Q
    ||||| ||| |||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||    |||||||| || | |||||| ||| |     
T  1950 agcttctgaagctggttctgaagaagtagctcctgaagcatgcttacctttcagtgcttgtcttaacagagcggctccttccttaaaagtttcttctgca 1851  T
Q  244 atttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgagctgttcatctctctgcttctc 332  Q
    || ||||||||||| ||||||||| | || |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  1850 atctcagcagccaacgaagcaatatctgcagctttctcaggagcaagctcataccctgctgccttgagctattcatctctttgcttctc 1762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 16 - 332
Target Start/End: Complemental strand, 25209679 - 25209384
Alignment:
Q  16 acatcatctgagtcagtggaggatgatgatgagggtgaggatggaaagtctggaatctgaacattgattttagcttttgaaggaatacctgaagaatgag 115  Q
    |||||||||||||||||||| || ||||| |||||||| ||||||| ||| |||||||||| ||||| ||||||||| |      |||||||||||||||    
T  25209679 acatcatctgagtcagtggaagaagatgaggagggtgaagatggaaggtcaggaatctgaatattgactttagctttag------tacctgaagaatgag 25209586  T
Q  116 cttctggacgagcagcttctgatgctggagcttttgatgctggttctgaagaagtagctcctgaagcatgttttcctttcagagcttgtcttaacaggtt 215  Q
    |||||||  ||||||||||||| |||||               ||||||||||||||||||||||||||| || |||||||| ||||||||||||||       
T  25209585 cttctggttgagcagcttctgaagctgg---------------ttctgaagaagtagctcctgaagcatgcttacctttcagtgcttgtcttaacagagc 25209501  T
Q  216 tgctccttcgttgatagtttcctcttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgagctgt 315  Q
     |||||||| || | ||| || ||| | || ||| |||||||||||||||| |  || ||||||||| ||||||||||||||||||||||||| | ||||    
T  25209500 ggctccttccttaacagtatcttctgcaatctcaacagccaaagaagcaattattgcagctttctcaagagcaagctcataccctgctgccttaaactgt 25209401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 36 - 203
Target Start/End: Original strand, 9162010 - 9162171
Alignment:
Q  36 ggatgatgatgagggtgaggatggaaagtctggaatctgaacattgattttagcttttgaaggaa-tacctgaagaatgagcttctggacgagcagcttc 134  Q
    |||||||||||||||||| ||||||| ||| |||||||||  |||||  ||||||||| |||||| |||||||||| ||||||||| || |||| ||||     
T  9162010 ggatgatgatgagggtgaagatggaaggtcaggaatctgagtattgacattagctttt-aaggaagtacctgaagagtgagcttctagatgagctgctt- 9162107  T
Q  135 tgatgctggagcttttgatgctggttctgaagaagtagctcctgaagcatgttttcctttcagagcttg 203  Q
         |||||||||| |||||||||||||| |||||||||||||||||||| ||  |||||| ||||||    
T  9162108 -----ctggagctttagatgctggttctgatgaagtagctcctgaagcatgcttatctttcaaagcttg 9162171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 36 - 265
Target Start/End: Complemental strand, 15886295 - 15886072
Alignment:
Q  36 ggatgatgatgagggtgaggatggaaagtctggaatctgaacattgattttagcttttgaaggaatacctgaagaatgagcttctggacgagcagcttct 135  Q
    |||||||||||||||||| || ||||  || |||||||||  |||||| | ||||||| ||| | |||||||||| |||||||||||| |||| ||||      
T  15886295 ggatgatgatgagggtgaagaaggaagttcaggaatctgagtattgatatcagcttttaaagaagtacctgaagagtgagcttctggatgagctgctt-- 15886198  T
Q  136 gatgctggagcttttgatgctggttctgaagaagtagctcctgaagcatgttttcctttcagagcttgtcttaacaggtttgctccttcgttgatagttt 235  Q
        |||||||||| |||||||||||||| ||||||||||||||||| || ||  |||||| ||||||   || ||| ||| |||| || | || |||||    
T  15886197 ----ctggagctttagatgctggttctgatgaagtagctcctgaagcctgcttgtctttcaaagcttgagatagcagttttactccctcctggacagttt 15886102  T
Q  236 cctcttccatttcagcagccaaagaagcaa 265  Q
    ||| ||| |  ||||||||||||| |||||    
T  15886101 ccttttcaacctcagcagccaaagcagcaa 15886072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 323
Target Start/End: Original strand, 10560456 - 10560737
Alignment:
Q  36 ggatgatgatgagggtgaggatggaaagtctggaatctgaacattgattttagcttttgaaggaatacctgaagaatgagcttctggacgagcagcttct 135  Q
    |||||||||||||||||| || |||| ||| | |||||||  |||||| | || ||||   | | |||||||||| ||||||||| || |||| ||||||    
T  10560456 ggatgatgatgagggtgaagaaggaaggtcagtaatctgagtattgatgtcagtttttagtgaagtacctgaagagtgagcttcttgatgagctgcttct 10560555  T
Q  136 gatgctggagcttttgatgctggttctgaagaagtagctcctgaagcatgttttcctttcagagcttgtcttaacaggtttgctccttcgttgatagttt 235  Q
    ||      |||||| || ||||||||||| ||||||||| ||||||| || ||  |||||| ||||||   || ||| ||  |||| || |  | |||||    
T  10560556 ga------agctttagaagctggttctgatgaagtagcttctgaagcctgcttgtctttcaaagcttgagatagcagtttcactccctcctgaacagttt 10560649  T
Q  236 cctcttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgagctgttcatctct 323  Q
    ||| ||| |  ||||||||||| | |||||   |||| || ||||||||||| |||| ||||||||| |||||||| ||||| |||||    
T  10560650 ccttttcaacctcagcagccaacgtagcaaactcagcagccttctcaggagctagcttataccctgcagccttgagttgttcctctct 10560737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 331
Target Start/End: Original strand, 18421673 - 18421766
Alignment:
Q  238 tcttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgagctgttcatctctctgcttct 331  Q
    ||||| || |||||||| ||||||||||| ||| | ||||| |||| | | || |||||||||||||| || |||||||||||||||| |||||    
T  18421673 tcttcaatctcagcagctaaagaagcaatcacatcagctttatcagcatccagttcataccctgctgcttttagctgttcatctctcttcttct 18421766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 247 - 323
Target Start/End: Complemental strand, 15886069 - 15885993
Alignment:
Q  247 tcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgagctgttcatctct 323  Q
    ||||||||||||| |||||   |||| || |||||||||||||||| ||||||||| |||||||| ||||| |||||    
T  15886069 tcagcagccaaagcagcaaactcagcagccttctcaggagcaagcttataccctgcagccttgagttgttcctctct 15885993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 18421460 - 18421593
Alignment:
Q  19 tcatctgagtcagtggaggatgatgatga---gggtgaggatggaaagtctggaatctgaacattgattttagct------tttgaaggaatacctgaag 109  Q
    |||||||||||||||||||||||||||||   |||||| |||| |||||    | ||||||||||||||||||||      ||||||| |||||||||||    
T  18421460 tcatctgagtcagtggaggatgatgatgatgagggtgatgatgtaaagttaaaagtctgaacattgattttagctttaggatttgaagaaatacctgaag 18421559  T
Q  110 aatgagcttctggacgagcagcttctgatgctgg 143  Q
      ||||||||||    ||||||||||||| ||||    
T  18421560 gctgagcttctgatgtagcagcttctgatactgg 18421593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 182
Target Start/End: Complemental strand, 2714238 - 2714149
Alignment:
Q  87 agcttttgaaggaatacctgaagaatgagcttctggacgagcagcttctgatgctggagcttttgatgctggttctgaagaagtagctcctgaagc 182  Q
    |||||| || ||| |||||||||| |||||||||||| || | |||||||      |||||||||| ||||||||||| ||||| |||||||||||    
T  2714238 agctttagatggattacctgaagactgagcttctggatgaactgcttctg------gagcttttgaagctggttctgatgaagttgctcctgaagc 2714149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 182
Target Start/End: Complemental strand, 21001045 - 21000905
Alignment:
Q  36 ggatgatgatgagggtgaggatggaaagtctggaatctgaacattgattttagcttttgaaggaatacctgaagaatgagcttctggacgagcagcttct 135  Q
    |||||||||||||||||| || |||| ||| |||||||||  | |||| | || ||||   |   |||||||||| |||||||||||| || | ||||||    
T  21001045 ggatgatgatgagggtgaagaaggaaggtcaggaatctgagtactgatgtcagtttttagtgatgtacctgaagagtgagcttctggaagatctgcttct 21000946  T
Q  136 gatgctggagcttttgatgctggttctgaagaagtagctcctgaagc 182  Q
    || ||| |||      | |||||||||||||||||||||||||||||    
T  21000945 gaagcttgag------aagctggttctgaagaagtagctcctgaagc 21000905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 9087559 - 9087601
Alignment:
Q  140 ctggagcttttgatgctggttctgaagaagtagctcctgaagc 182  Q
    ||||||||||||| ||||||||||| ||||| |||||||||||    
T  9087559 ctggagcttttgaagctggttctgatgaagttgctcctgaagc 9087601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 16 - 329
Target Start/End: Original strand, 194326 - 194633
Alignment:
Q  16 acatcatctgagtcagtggaggatgatgatgagggtgaggatggaaagtctggaatctgaacattgattttagctttt------gaaggaatacctgaag 109  Q
    |||| ||||||||||||||||||||||||   |||||  ||||||| ||| |||||||||| ||| ||| |||||||       ||||||||||||||||    
T  194326 acattatctgagtcagtggaggatgatga---gggtggagatggaaggtcaggaatctgaatattaattctagctttatattgagaaggaatacctgaag 194422  T
Q  110 aatgagcttctggacgagcagcttctgatgctggagcttttgatgctggttctgaagaagtagctcctgaagcatgttttcctttcagagcttgtcttaa 209  Q
    | ||| ||| ||   ||||||||||||      |||||||||||| ||||||||||||||   ||||||||| ||| ||||||||||| | |||||||||    
T  194423 attgaccttttgattgagcagcttctg------gagcttttgatgttggttctgaagaag---ctcctgaagtatgctttcctttcagggattgtcttaa 194513  T
Q  210 caggtttgctccttcgttgatagtttcctcttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttg 309  Q
    |||   | ||||||| |||| | |||| ||||| | ||||||||  |||| |||||| ||||| || ||||||||||||||||||||||| |||||||||    
T  194514 cagtgctactccttccttgacattttcttcttctaattcagcagttaaagtagcaatcacagcagccttctcaggagcaagctcatacccagctgccttg 194613  T
Q  310 agctgttcatctctctgctt 329  Q
    || ||||||||||| |||||    
T  194614 agttgttcatctctttgctt 194633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 7e-43; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 36 - 323
Target Start/End: Original strand, 19420662 - 19420943
Alignment:
Q  36 ggatgatgatgagggtgaggatggaaagtctggaatctgaacattgattttagcttttgaaggaatacctgaagaatgagcttctggacgagcagcttct 135  Q
    |||||||||||||||||| ||||||| ||| |||||||||  |||||| ||||||||| ||| | |||||||||| |||||||||||| |||| ||||      
T  19420662 ggatgatgatgagggtgaagatggaaggtcaggaatctgagtattgatattagcttttaaagaagtacctgaagagtgagcttctggatgagctgctt-- 19420759  T
Q  136 gatgctggagcttttgatgctggttctgaagaagtagctcctgaagcatgttttcctttcagagcttgtcttaacaggtttgctccttcgttgatagttt 235  Q
        |||||||||| |||||||||||||| ||||||||||||||||| || ||  |||||| ||||||   |||||| ||| |||| || | || || ||    
T  19420760 ----ctggagctttagatgctggttctgatgaagtagctcctgaagcctgcttgtctttcaaagcttgagataacagttttactccctcctggacagctt 19420855  T
Q  236 cctcttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgagctgttcatctct 323  Q
    | | ||| |  ||||||||||||| |||||   |||| || |||||||||||||||| ||||||||| |||||||| ||||| |||||    
T  19420856 ctttttcaacctcagcagccaaagcagcaaactcagcagccttctcaggagcaagcttataccctgcagccttgagttgttcctctct 19420943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 140 - 332
Target Start/End: Complemental strand, 23467764 - 23467572
Alignment:
Q  140 ctggagcttttgatgctggttctgaagaagtagctcctgaagcatgttttcctttcagagcttgtcttaacaggtttgctccttcgttgatagtttcctc 239  Q
    |||||||||| || |||||||| || |||||||||||||||||||| ||   |||||||||||||  |||||  ||  ||||||| | || |||||||||    
T  23467764 ctggagctttagaagctggttcagatgaagtagctcctgaagcatgcttatttttcagagcttgtgataacaacttgactccttcctggacagtttcctc 23467665  T
Q  240 ttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgagctgttcatctctctgcttctc 332  Q
    ||| |  |||||||| |||| ||| ||  |||| || || |||| |||||||||||| ||||| |||||||| || ||||| || ||||||||    
T  23467664 ttctaactcagcagctaaagcagccatctcagcagccttttcagtagcaagctcatatcctgcagccttgagttgctcatccctttgcttctc 23467572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 36 - 317
Target Start/End: Complemental strand, 30323245 - 30322969
Alignment:
Q  36 ggatgatgatgagggtgaggatggaaagtctggaatctgaacattgattttagcttttgaaggaa-tacctgaagaatgagcttctggacgagcagcttc 134  Q
    |||||||||||||||||| || |||| ||| |||||||||  |||||| | || |||| |  ||| |||||||||| |||||||||||| |||| |||||    
T  30323245 ggatgatgatgagggtgaagaaggaaggtcaggaatctgagtattgatgtcagttttttagtgaagtacctgaagagtgagcttctggatgagctgcttc 30323146  T
Q  135 tgatgctggagcttttgatgctggttctgaagaagtagctcctgaagcatgttttcctttcagagcttgtcttaacaggtttgctccttcgttgatagtt 234  Q
    |||      |||||| || ||||||||||||||||||||| ||||||| || ||  |||||| ||||||   || ||| ||  |||| || |  | ||||    
T  30323145 tga------agctttagaagctggttctgaagaagtagcttctgaagcctgcttgtctttcaaagcttgagatagcagtttcactccctcctgaacagtt 30323052  T
Q  235 tcctcttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgagctgttc 317  Q
    |||| ||| |  ||||||||||| | |||||   |||| || ||||||||||| |||| ||||||||| |||||||| |||||    
T  30323051 tccttttcaacctcagcagccaacgcagcaaactcagcagccttctcaggagctagcttataccctgcagccttgagttgttc 30322969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 18156106 - 18156217
Alignment:
Q  16 acatcatctgagtcagtggaggatgatgatgagggtgaggatggaaagtctggaatctgaacattgattttagcttt------tgaaggaatacctgaag 109  Q
    ||||||||||||||||| ||||||||||| |||||||| ||||||| |||  ||||||||| ||||| | |||||||       |||||||||||||| |    
T  18156106 acatcatctgagtcagtagaggatgatgaggagggtgaagatggaaggtcaagaatctgaatattgactctagctttaggttgagaaggaatacctgatg 18156205  T
Q  110 aatgagcttctg 121  Q
    ||||||||||||    
T  18156206 aatgagcttctg 18156217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 174
Target Start/End: Original strand, 19227245 - 19227377
Alignment:
Q  36 ggatgatgatgagggtgaggatggaaagtctggaatctgaacattgattttagcttttgaaggaatacctgaagaatgagcttctggacgagcagcttct 135  Q
    |||||||||||||||||| || |||| ||| |||||||||  |||||| | || ||||  || | |||||||||| |||| ||||||| |||| ||||||    
T  19227245 ggatgatgatgagggtgaagagggaaggtcaggaatctgagtattgatgtcagtttttagagaagtacctgaagagtgaggttctggatgagctgcttct 19227344  T
Q  136 gatgctggagcttttgatgctggttctgaagaagtagct 174  Q
    ||      |||||| || ||||||||||| |||||||||    
T  19227345 ga------agctttagaagctggttctgatgaagtagct 19227377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 323
Target Start/End: Original strand, 3835329 - 3835406
Alignment:
Q  246 ttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgagctgttcatctct 323  Q
    ||||||||| | |||||||||  |||| |||||||||| | | || ||| |||||||||| |||||||||||||||||    
T  3835329 ttcagcagctagagaagcaatctcagcagctttctcagcatccagatcaaaccctgctgctttgagctgttcatctct 3835406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 18156209 - 18156249
Alignment:
Q  143 gagcttttgatgctggttctgaagaagtagctcctgaagca 183  Q
    |||||| ||| ||||||||||||||||||||||||||||||    
T  18156209 gagcttctgaagctggttctgaagaagtagctcctgaagca 18156249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 280 - 331
Target Start/End: Complemental strand, 25682295 - 25682244
Alignment:
Q  280 tcaggagcaagctcataccctgctgccttgagctgttcatctctctgcttct 331  Q
    ||||||||||||||||||||||| |||||||| ||||| || || |||||||    
T  25682295 tcaggagcaagctcataccctgcagccttgagttgttcctccctttgcttct 25682244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 26113651 - 26113693
Alignment:
Q  140 ctggagcttttgatgctggttctgaagaagtagctcctgaagc 182  Q
    |||||||||||||  |||||||||| |||||||||||||||||    
T  26113651 ctggagcttttgaaactggttctgatgaagtagctcctgaagc 26113693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 144 - 332
Target Start/End: Original strand, 21163498 - 21163686
Alignment:
Q  144 agcttttgatgctggttctgaagaagtagctcctgaagcatgttttcctttcagagcttgtcttaacaggtttgctccttcgttgatagtttcctcttcc 243  Q
    ||||| ||| |||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||    |||||||| || | ||| || ||| |     
T  21163498 agcttctgaagctggttctgaagaagtagctcctgaagcatgcttacctttcagtgcttgtcttaacagagcggctccttccttaacagtatcttctgca 21163597  T
Q  244 atttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgagctgttcatctctctgcttctc 332  Q
    || |||||||||||||||||||| || || ||||  ||||||||||||||||||| ||||||||| | |||||||||||| ||||||||    
T  21163598 atctcagcagccaaagaagcaattactgcagcttgttcaggagcaagctcataccttgctgccttcaactgttcatctctttgcttctc 21163686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 36 - 323
Target Start/End: Complemental strand, 23157852 - 23157571
Alignment:
Q  36 ggatgatgatgagggtgaggatggaaagtctggaatctgaacattgattttagcttttgaaggaatacctgaagaatgagcttctggacgagcagcttct 135  Q
    ||||||||| || ||||| ||||||| ||| |||||||||  |||||| ||| ||||| ||| | |||||||||| |||||||||||| |||| ||||      
T  23157852 ggatgatgaagatggtgaagatggaaggtcaggaatctgagtattgatattatcttttaaagaagtacctgaagagtgagcttctggatgagctgctt-- 23157755  T
Q  136 gatgctggagcttttgatgctggttctgaagaagtagctcctgaagcatgttttcctttcagagcttgtcttaacaggtttgctccttcgttgatagttt 235  Q
        ||||||||||||||||||||||||| ||||||||||||||||| |  ||  |||||| ||||||   || ||| ||| |||| || | || |||||    
T  23157754 ----ctggagcttttgatgctggttctgatgaagtagctcctgaagcctacttgtctttcaaagcttgagatatcagttttactccctcctggacagttt 23157659  T
Q  236 cctcttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgagctgttcatctct 323  Q
    | | ||| | ||||||||| |||| | |||   |||| || |||||||||||||||| ||||||||| |||||||| ||||| |||||    
T  23157658 cttgttcaacttcagcagctaaagcaacaaactcagcagccttctcaggagcaagcttataccctgcagccttgagttgttcctctct 23157571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 36 - 203
Target Start/End: Original strand, 26562751 - 26562912
Alignment:
Q  36 ggatgatgatgagggtgaggatggaaagtctggaatctgaacattgattttagcttttgaaggaatacctgaagaatgagcttctggacgagcagcttct 135  Q
    |||||||||||||||||| ||||||| ||| |||||||||  |||||| | ||||||| ||| | |||||||||  |||||||||||| |||| ||||      
T  26562751 ggatgatgatgagggtgaagatggaaggtcaggaatctgagtattgatatcagcttttaaagaagtacctgaagtgtgagcttctggatgagctgctt-- 26562848  T
Q  136 gatgctggagcttttgatgctggttctgaagaagtagctcctgaagcatgttttcctttcagagcttg 203  Q
        |||||||||| || ||||||||||| ||||||||||||||||| || ||  |||||| ||||||    
T  26562849 ----ctggagctttagaagctggttctgatgaagtagctcctgaagcctgcttgtctttcaaagcttg 26562912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 123
Target Start/End: Original strand, 7681554 - 7681637
Alignment:
Q  40 gatgatgagggtgaggatggaaagtctggaatctgaacattgattttagcttttgaaggaatacctgaagaatgagcttctgga 123  Q
    |||||||||||||| ||||||| ||| |||||||||  |||||| |||||||| || | | |||||||||| ||||||||||||    
T  7681554 gatgatgagggtgaagatggaaggtcaggaatctgagtattgatcttagctttggaggaagtacctgaagagtgagcttctgga 7681637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 7681633 - 7681678
Alignment:
Q  140 ctggagcttttgatgctggttctgaagaagtagctcctgaagcatg 185  Q
    |||||||||| ||||||||||| || ||||||||||||||||||||    
T  7681633 ctggagctttagatgctggttcagatgaagtagctcctgaagcatg 7681678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 182
Target Start/End: Original strand, 19181180 - 19181257
Alignment:
Q  99 aatacctgaagaatgagcttctggacgagcagcttctgatgctggagcttttgatgctggttctgaagaagtagctcctgaagc 182  Q
    |||||||||||| |||||||||||| || | |||||||      ||||||||||  | ||||||||||||||||||||||||||    
T  19181180 aatacctgaagattgagcttctggatgaactgcttctg------gagcttttgaaacaggttctgaagaagtagctcctgaagc 19181257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 182
Target Start/End: Complemental strand, 5648227 - 5648185
Alignment:
Q  140 ctggagcttttgatgctggttctgaagaagtagctcctgaagc 182  Q
    ||||||| |||||| |||||||||| |||||||||||||||||    
T  5648227 ctggagcatttgatactggttctgatgaagtagctcctgaagc 5648185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 36 - 317
Target Start/End: Complemental strand, 40869 - 40594
Alignment:
Q  36 ggatgatgatgagggtgaggatggaaagtctggaatctgaacattgattttagcttttgaaggaa-tacctgaagaatgagcttctggacgagcagcttc 134  Q
    |||||||||||||||||| ||||||| ||| |||||||||  |||||  ||||||||| |||||| |||||||||| ||| |||||||| |||| |||||    
T  40869 ggatgatgatgagggtgaagatggaaggtcaggaatctgagtattgacattagctttt-aaggaagtacctgaagagtgaacttctggatgagctgcttc 40771  T
Q  135 tgatgctggagcttttgatgctggttctgaagaagtagctcctgaagcatgttttcctttcagagcttgtcttaacaggtttgctccttcgttgatagtt 234  Q
    ||      ||||||| |||||||||||||| |||||||||||| ||||||| ||  |||||| ||||||   |||||| ||| ||||||| | || ||||    
T  40770 tg------gagctttagatgctggttctgatgaagtagctcctaaagcatgcttgtctttcaaagcttgagataacagttttactccttcctagacagtt 40677  T
Q  235 tcctcttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgagctgttc 317  Q
    || | ||| | |||||||||||||| |||||   |||| || |||||||||||||||| ||| ||||| |||||||| |||||    
T  40676 tctttttcaacttcagcagccaaagcagcaaactcagcagccttctcaggagcaagcttatatcctgcagccttgagttgttc 40594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 144 - 329
Target Start/End: Complemental strand, 18923832 - 18923647
Alignment:
Q  144 agcttttgatgctggttctgaagaagtagctcctgaagcatgttttcctttcagagcttgtcttaacaggtttgctccttcgttgatagtttcctcttcc 243  Q
    ||||| ||| |||||||||||||||||||||||||||||||  |||||||||| |||||| ||||||| |  ||||||||| |||| |||||| ||| |     
T  18923832 agcttctgaagctggttctgaagaagtagctcctgaagcattctttcctttcaaagcttgacttaacaaggatgctccttccttgacagtttcttctgca 18923733  T
Q  244 atttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgagctgttcatctctctgctt 329  Q
    || |||||||| || || |||||  | || ||||||||||||||||| || |||||||||||||||||||||||||| || |||||    
T  18923732 atctcagcagctaatgaggcaatttctgcagctttctcaggagcaagttcgtaccctgctgccttgagctgttcatccctttgctt 18923647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 36 - 323
Target Start/End: Complemental strand, 20038392 - 20038111
Alignment:
Q  36 ggatgatgatgagggtgaggatggaaagtctggaatctgaacattgattttagcttttgaaggaatacctgaagaatgagcttctggacgagcagcttct 135  Q
    |||||||||||||||||| || |||| ||| |||||||||  |||||| ||||||||| ||| | |||||||||| |||||||||||| |||| ||||      
T  20038392 ggatgatgatgagggtgaagaaggaacgtcaggaatctgagtattgatattagcttttaaagaagtacctgaagagtgagcttctggatgagctgctt-- 20038295  T
Q  136 gatgctggagcttttgatgctggttctgaagaagtagctcctgaagcatgttttcctttcagagcttgtcttaacaggtttgctccttcgttgatagttt 235  Q
        |||||||||| |||||||||||||| ||||||||||||||||| || ||  |||||| ||||||   || ||| ||| |||| || | || |||||    
T  20038294 ----ctggagctttagatgctggttctgatgaagtagctcctgaagcctgcttgtctttcaaagcttgagatagcagttttactccctcctggacagttt 20038199  T
Q  236 cctcttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgagctgttcatctct 323  Q
    | | ||| | ||||||||| |||| |||||   |||| || |||| ||||||||||| ||||| ||| |||||||| ||||| |||||    
T  20038198 ctttttcaacttcagcagctaaagcagcaaactcagcagccttcttaggagcaagcttataccttgcagccttgagttgttcctctct 20038111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 94 - 331
Target Start/End: Original strand, 25796187 - 25796418
Alignment:
Q  94 gaaggaatacctgaagaatgagcttctggacgagcagcttctgatgctggagcttttgatgctggttctgaagaagtagctcctgaagcatgttttcctt 193  Q
    ||||||||||||||||||||| |||||||| |||| ||||||||      |||||| || ||| ||||| | |||||||||||||||||||| ||| |||    
T  25796187 gaaggaatacctgaagaatgaccttctggatgagctgcttctga------agctttagaagcttgttctaatgaagtagctcctgaagcatgctttgctt 25796280  T
Q  194 tcagagcttgtcttaacaggtttgctccttcgttgatagtttcctcttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagctc 293  Q
    ||| ||||| |  |||||    | ||||||| |||| |||||| | ||| | ||||||||| |||  ||| |   |||| || |||||||||||||||||    
T  25796281 tcaaagcttatgataacaatgctactccttccttgacagtttcttgttctaattcagcagctaaaacagccaactcagcagccttctcaggagcaagctc 25796380  T
Q  294 ataccctgctgccttgagctgttcatctctctgcttct 331  Q
    || | |||| |||||||| ||||| || || |||||||    
T  25796381 atgctctgcagccttgagttgttcctccctttgcttct 25796418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 231 - 331
Target Start/End: Complemental strand, 25733191 - 25733091
Alignment:
Q  231 agtttcctcttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgagctgttcatctctctgcttc 330  Q
    |||||| ||||| || |||||| |||| |||||||| ||||| |||||||||| | ||||||||||||| || || ||||| ||||||||||||||||||    
T  25733191 agtttcttcttcaatctcagcaaccaaggaagcaatcacagcagctttctcagcatcaagctcatacccagcagctttgagttgttcatctctctgcttc 25733092  T
Q  331 t 331  Q
    |    
T  25733091 t 25733091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 217 - 323
Target Start/End: Original strand, 13915636 - 13915742
Alignment:
Q  217 gctccttcgttgatagtttcctcttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgagctgtt 316  Q
    |||||||| || | ||||| |||||||| ||||||||| ||||| ||||| ||||| |||||||||| | | |||||||||||| |||| || || ||||    
T  13915636 gctccttccttaacagtttgctcttccaattcagcagctaaagaggcaattacagcagctttctcagaatccagctcataccctactgctttaagttgtt 13915735  T
Q  317 catctct 323  Q
    |||||||    
T  13915736 catctct 13915742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 238 - 331
Target Start/End: Original strand, 22288450 - 22288543
Alignment:
Q  238 tcttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgagctgttcatctctctgcttct 331  Q
    ||||| ||||||||||| | ||||||||| ||||| |||||||||| | | || | |||||||||||| ||||| ||||||||||||| |||||    
T  22288450 tcttcaatttcagcagctagagaagcaatcacagcagctttctcagcatccagattataccctgctgctttgagttgttcatctctcttcttct 22288543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 13915462 - 13915577
Alignment:
Q  19 tcatctgagtcagtggaggatgatgatgagggtgaggatggaaagtctggaatctgaacattgattttagcttttgaaggaatacctgaagaatgagctt 118  Q
    ||||||||||||||||| ||||||||   |||||| ||||||| ||  ||| |||||| ||||| ||||||||| |      ||||||||| ||||||||    
T  13915462 tcatctgagtcagtggaagatgatga---gggtgaagatggaaggttaggagtctgaatattgactttagctttag------tacctgaaggatgagctt 13915552  T
Q  119 ctggacgagcagcttctgatgctgg 143  Q
    |||| | ||||||||||||||||||    
T  13915553 ctggtctagcagcttctgatgctgg 13915577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 18923951 - 18923875
Alignment:
Q  16 acatcatctgagtcagtggaggatgatgatgagggtgaggatggaaagtctggaatctgaacattgattttagcttt 92  Q
    |||||||||||||||||||| |||||||| |||||||| ||| ||| | | |||||||||  ||||||| |||||||    
T  18923951 acatcatctgagtcagtggaagatgatgaggagggtgaagatagaagggcaggaatctgagtattgattctagcttt 18923875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 22288237 - 22288370
Alignment:
Q  19 tcatctgagtcagtggaggatgatgatga---gggtgaggatggaaagtctggaatctgaacattgattttagcttt------tgaaggaatacctgaag 109  Q
    |||||||||||||||||||||||||||||   |||||| ||||||| ||    | |||||||||||| |||||||||      ||||| |||||||||||    
T  22288237 tcatctgagtcagtggaggatgatgatgaagagggtgatgatggaaggttaaaagtctgaacattgaatttagcttttggatctgaagaaatacctgaag 22288336  T
Q  110 aatgagcttctggacgagcagcttctgatgctgg 143  Q
     |||||||||||  | || |||||||||| ||||    
T  22288337 gatgagcttctgatctagtagcttctgatactgg 22288370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 329
Target Start/End: Complemental strand, 25684578 - 25684259
Alignment:
Q  19 tcatctgagtcagtggaggatgatga---tgagggtgaggatggaaagtctggaatctgaacattgattttagcttttg------aaggaatacctgaag 109  Q
    ||||||||||||||||| ||||||||   ||||||||| ||||||  ||  ||| ||||||  ||||| ||||||||||      ||| | |||||||||    
T  25684578 tcatctgagtcagtggaagatgatgaggatgagggtgaagatggagggttaggagtctgaattttgatgttagcttttggatctgaagaattacctgaag 25684479  T
Q  110 aatgagcttctggacgagcagcttctgatgctggagcttttgatgctggttctgaagaagtagctcctgaagcatgttttcctttcagagcttgtcttaa 209  Q
      ||||||||||  | | ||||||||||    | ||||| ||||||||||||||||| | | ||| ||||| |||  ||  |||||||||||  | ||||    
T  25684478 gctgagcttctgatctaacagcttctgacttagcagcttctgatgctggttctgaaggaattgcttctgaaacattattggctttcagagctccttttaa 25684379  T
Q  210 caggtttgctccttcgttgatagtttcctcttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttg 309  Q
    ||  |  | |||||| ||||   |||  ||||| || |||||||||| || ||||||  |||| |||||||||| | | ||  ||||||| || || |||    
T  25684378 caattcagttccttccttgactatttgttcttcaatctcagcagccagagcagcaatctcagcagctttctcagcatccagaacatacccagcagctttg 25684279  T
Q  310 agctgttcatctctctgctt 329  Q
    ||||||||||||||||||||    
T  25684278 agctgttcatctctctgctt 25684259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 182
Target Start/End: Original strand, 26867054 - 26867143
Alignment:
Q  87 agcttttgaaggaatacctgaagaatgagcttctggacgagcagcttctgatgctggagcttttgatgctggttctgaagaagtagctcctgaagc 182  Q
    |||||| || ||| |||||||||| |||||||||||| || | |||||||      |||||||||| ||||||||||| ||||| |||||||||||    
T  26867054 agctttagatggattacctgaagactgagcttctggatgaactgcttctg------gagcttttgaagctggttctgatgaagttgctcctgaagc 26867143  T

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Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 16932700 - 16932742
Alignment:
Q  140 ctggagcttttgatgctggttctgaagaagtagctcctgaagc 182  Q
    ||||||||||||| ||||||||||| ||||| |||||||||||    
T  16932700 ctggagcttttgaagctggttctgatgaagttgctcctgaagc 16932742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 9120942 - 9120893
Alignment:
Q  154 gctggttctgaagaagtagctcctgaagcatgttttcctttcagagcttg 203  Q
    ||||||||||||||||||||||||||||| || ||  |||||| ||||||    
T  9120942 gctggttctgaagaagtagctcctgaagcttgcttgtctttcaaagcttg 9120893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 94 - 331
Target Start/End: Original strand, 789 - 1026
Alignment:
Q  94 gaaggaatacctgaagaatgagcttctggacgagcagcttctgatgctggagcttttgatgctggttctgaagaagtagctcctgaagcatgttttcctt 193  Q
    |||||||||||||||| |||||||||||| | |   ||||||||||  | ||||| |||||||||||||||||| || ||| ||| | |||| ||  |||    
T  789 gaaggaatacctgaaggatgagcttctggcctaatggcttctgatgtagcagcttctgatgctggttctgaagaggttgcttctggaacatgcttatctt 888  T
Q  194 tcagagcttgtcttaacaggtttgctccttcgttgatagtttcctcttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagctc 293  Q
    ||||||| ||  |||||| |   |||||||| |||| ||| || ||||| || |||||| ||||||||||||| |||||||||||||||| | | |||||    
T  889 tcagagcctgctttaacaaggcagctccttccttgacagtgtcttcttcaatctcagcaaccaaagaagcaattacagctgctttctcagcatccagctc 988  T
Q  294 ataccctgctgccttgagctgttcatctctctgcttct 331  Q
    ||| || || || || ||||||||||||||||||||||    
T  989 atatccagcagctttaagctgttcatctctctgcttct 1026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 93 - 331
Target Start/End: Original strand, 177817 - 178055
Alignment:
Q  93 tgaaggaatacctgaagaatgagcttctggacgagcagcttctgatgctggagcttttgatgctggttctgaagaagtagctcctgaagcatgttttcct 192  Q
    ||||||||||||||||| |||||||||| |   || ||||||||||   ||||||| |||| ||||||||||||| || ||||||||| |||| ||  ||    
T  177817 tgaaggaatacctgaaggatgagcttcttgcttagtagcttctgatctaggagcttctgattctggttctgaagatgttgctcctgaaacatgcttagct 177916  T
Q  193 ttcagagcttgtcttaacaggtttgctccttcgttgatagtttcctcttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagct 292  Q
    |||||||| |   ||||||     |||||||| || | |||||| ||||| || |||||||| ||||||||||| ||||| |||||||||| | | || |    
T  177917 ttcagagcctactttaacaaagcagctccttccttaacagtttcttcttcaatctcagcagctaaagaagcaatcacagcagctttctcagcatccagtt 178016  T
Q  293 cataccctgctgccttgagctgttcatctctctgcttct 331  Q
    ||||||||||||| || |||||||||||||| |||||||    
T  178017 cataccctgctgcttttagctgttcatctctttgcttct 178055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 51716 - 51679
Alignment:
Q  21 atctgagtcagtggaggatgatgatgagggtgaggatg 58  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  51716 atctgagtcagtggaggatgatgatgagggtgaagatg 51679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0474 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0474
Description:

Target: scaffold0474; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 36 - 323
Target Start/End: Complemental strand, 3408 - 3127
Alignment:
Q  36 ggatgatgatgagggtgaggatggaaagtctggaatctgaacattgattttagcttttgaaggaatacctgaagaatgagcttctggacgagcagcttct 135  Q
    |||||||||||||||||| || |||| ||| |||||||||  |||||| | |||||||  || | |||||||||| |||||||||||| |||| ||||||    
T  3408 ggatgatgatgagggtgaagaaggaaggtcaggaatctgagtattgatatcagcttttagagaagtacctgaagagtgagcttctggatgagctgcttct 3309  T
Q  136 gatgctggagcttttgatgctggttctgaagaagtagctcctgaagcatgttttcctttcagagcttgtcttaacaggtttgctccttcgttgatagttt 235  Q
    ||      |||||| |||||||||||||| ||||||||| ||||||| || ||  |||||| ||||||   ||  || ||  ||||||| |  | |||||    
T  3308 ga------agctttagatgctggttctgatgaagtagcttctgaagcctgcttgtctttcaaagcttgagatagtagtttcactccttcctgtacagttt 3215  T
Q  236 cctcttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgagctgttcatctct 323  Q
    ||| ||| |  ||||||||||| | |||||   |||| || |||||| ||||||||| ||||||||| |||||||| ||||| |||||    
T  3214 ccttttcaacctcagcagccaacgcagcaaactcagcagccttctcaagagcaagcttataccctgcagccttgagttgttcctctct 3127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0497 (Bit Score: 52; Significance: 9e-21; HSPs: 4)
Name: scaffold0497
Description:

Target: scaffold0497; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 8186 - 8056
Alignment:
Q  19 tcatctgagtcagtggaggatgatgatgagggtgaggatggaaagtctggaatctgaacattgattttagcttt------tgaaggaatacctgaagaat 112  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||  | | |||||||||||| || ||||||      ||||| ||||||||||| ||    
T  8186 tcatctgagtcagtggaggatgatgatgagggtgatgatggaaggttagaagtctgaacattgaattgagcttttggatctgaagaaatacctgaaggat 8087  T
Q  113 gagcttctggacgagcagcttctgatgctgg 143  Q
    |||||||||  | || |||||||||||||||    
T  8086 gagcttctgatctagtagcttctgatgctgg 8056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0497; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 246 - 331
Target Start/End: Complemental strand, 7968 - 7883
Alignment:
Q  246 ttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgagctgttcatctctctgcttct 331  Q
    ||||||||| | ||||||||| ||||| |||||||||| | | || || ||||||||||| ||||||||||||||||||| |||||    
T  7968 ttcagcagctagagaagcaatcacagcagctttctcagcatccagatcttaccctgctgctttgagctgttcatctctcttcttct 7883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0497; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 331
Target Start/End: Complemental strand, 4663 - 4626
Alignment:
Q  294 ataccctgctgccttgagctgttcatctctctgcttct 331  Q
    |||||||||||| ||||||||||||||||||| |||||    
T  4663 ataccctgctgctttgagctgttcatctctcttcttct 4626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0497; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 1882 - 1854
Alignment:
Q  19 tcatctgagtcagtggaggatgatgatga 47  Q
    |||||||||||||||||||||||||||||    
T  1882 tcatctgagtcagtggaggatgatgatga 1854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0411 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0411
Description:

Target: scaffold0411; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 323
Target Start/End: Complemental strand, 836 - 669
Alignment:
Q  156 tggttctgaagaagtagctcctgaagcatgttttcctttcagagcttgtcttaacaggtttgctccttcgttgatagtttcctcttccatttcagcagcc 255  Q
    |||||||||||  |  ||| |||||||||  || |||||||| ||||||||||||||   ||||||||| || | ||| |||||| | || |||||||||    
T  836 tggttctgaaggtgctgcttctgaagcattcttacctttcagtgcttgtcttaacagagctgctccttccttaacagtatcctctgcaatctcagcagcc 737  T
Q  256 aaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgagctgttcatctct 323  Q
    ||||||||||| || || ||||  | || | | ||||||||||||||||| || ||||||||||||||    
T  736 aaagaagcaattactgcagcttgtttagcatctagctcataccctgctgctttaagctgttcatctct 669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0411; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 323
Target Start/End: Complemental strand, 4867 - 4700
Alignment:
Q  156 tggttctgaagaagtagctcctgaagcatgttttcctttcagagcttgtcttaacaggtttgctccttcgttgatagtttcctcttccatttcagcagcc 255  Q
    |||||||||||  |  ||| |||||||||  || |||||||| ||||||||||||||   ||||||||| || | ||| |||||| | || |||||||||    
T  4867 tggttctgaaggtgctgcttctgaagcattcttacctttcagtgcttgtcttaacagagctgctccttccttaacagtatcctctgcaatctcagcagcc 4768  T
Q  256 aaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgagctgttcatctct 323  Q
    ||||||||||| || || ||||  | || | | ||||||||||||||||| || ||||||||||||||    
T  4767 aaagaagcaattactgcagcttgtttagcatctagctcataccctgctgctttaagctgttcatctct 4700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 323
Target Start/End: Complemental strand, 2184 - 1903
Alignment:
Q  36 ggatgatgatgagggtgaggatggaaagtctggaatctgaacattgattttagcttttgaaggaatacctgaagaatgagcttctggacgagcagcttct 135  Q
    |||||||||||||||||| || |||| ||| |||||||||  |||||| | || ||||  || | |||||||||| |||||||||||| |||| ||||||    
T  2184 ggatgatgatgagggtgaagaaggaaggtcaggaatctgagtattgatgtcagtttttagagaagtacctgaagagtgagcttctggatgagctgcttct 2085  T
Q  136 gatgctggagcttttgatgctggttctgaagaagtagctcctgaagcatgttttcctttcagagcttgtcttaacaggtttgctccttcgttgatagttt 235  Q
    ||      |||||| || ||||||||||| ||||||||| ||||||| || ||  |||||| |||||    || ||| ||  |||| || | || |||||    
T  2084 ga------agctttagaagctggttctgatgaagtagcttctgaagcctgcttgtctttcaaagcttaagatagcagtttcactccctcctggacagttt 1991  T
Q  236 cctcttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgagctgttcatctct 323  Q
    ||| ||| |  ||||||||||| | |||||   |||| || |||||| |||| |||| ||||| ||| |||||||| ||||| |||||    
T  1990 ccttttcaacctcagcagccaacgcagcaaactcagcagccttctcatgagctagcttataccttgcagccttgagttgttcctctct 1903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1465 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold1465
Description:

Target: scaffold1465; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 218 - 332
Target Start/End: Original strand, 36 - 150
Alignment:
Q  218 ctccttcgttgatagtttcctcttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgagctgttc 317  Q
    ||||||| | || |||||||||||| |  |||||||| |||| ||| ||  |||| || |||| ||||||||||||||||||||| |||||||| |||||    
T  36 ctccttcctggacagtttcctcttctaactcagcagctaaagcagccatctcagcagccttctaaggagcaagctcataccctgcagccttgagttgttc 135  T
Q  318 atctctctgcttctc 332  Q
    ||| || ||||||||    
T  136 atccctttgcttctc 150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 238 - 331
Target Start/End: Original strand, 218962 - 219055
Alignment:
Q  238 tcttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgagctgttcatctctctgcttct 331  Q
    ||||| ||||||| ||| | ||||||||| ||||| |||||||||| | | || | |||||||||||| ||||||||||||||||||| |||||    
T  218962 tcttcaatttcagtagctagagaagcaatcacagcagctttctcagcatccagattataccctgctgctttgagctgttcatctctcttcttct 219055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2119 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold2119
Description:

Target: scaffold2119; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 81 - 182
Target Start/End: Complemental strand, 227 - 132
Alignment:
Q  81 gattttagcttttgaaggaatacctgaagaatgagcttctggacgagcagcttctgatgctggagcttttgatgctggttctgaagaagtagctcctgaa 180  Q
    ||||| |||||| || | |||||||||||| |||||||||||| |||| |||||||      |||||||||| || |||||||||||||| |||||||||    
T  227 gatttcagctttggatgaaatacctgaagagtgagcttctggatgagctgcttctg------gagcttttgaagcaggttctgaagaagtggctcctgaa 134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 331
Target Start/End: Original strand, 88 - 173
Alignment:
Q  246 ttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgagctgttcatctctctgcttct 331  Q
    ||||||||| | ||||||||| ||||| |||||||||| | | || | |||||||||||| ||||| ||||||||||||| |||||    
T  88 ttcagcagctagagaagcaatcacagcagctttctcagcatccagataataccctgctgctttgagatgttcatctctcttcttct 173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 99 - 182
Target Start/End: Complemental strand, 51485 - 51408
Alignment:
Q  99 aatacctgaagaatgagcttctggacgagcagcttctgatgctggagcttttgatgctggttctgaagaagtagctcctgaagc 182  Q
    |||||||||||| |||||||||||| |||| |||||||      |||||||||| || |||||||||||||| |||||||||||    
T  51485 aatacctgaagagtgagcttctggatgagctgcttctg------gagcttttgaagcaggttctgaagaagtggctcctgaagc 51408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 2675 - 2635
Alignment:
Q  21 atctgagtcagtggaggatgatgatgagggtgaggatggaa 61  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  2675 atctgagtcagtggaggatgatgatgagggtgaagatggaa 2635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 129965 - 130098
Alignment:
Q  19 tcatctgagtcagtggaggatgatgatga---gggtgaggatggaaagtctggaatctgaacattgattttagcttttg------aaggaatacctgaag 109  Q
    ||||||||||||||||| |||||||||||   |||||| || |||| ||  | | |||||||||||| || ||||||||      ||| |||||||||||    
T  129965 tcatctgagtcagtggaagatgatgatgaagagggtgatgaaggaaggttagaagtctgaacattgaattgagcttttggatctgaagaaatacctgaag 130064  T
Q  110 aatgagcttctggacgagcagcttctgatgctgg 143  Q
     |||||||||||  | ||||||||||||||||||    
T  130065 gatgagcttctgatctagcagcttctgatgctgg 130098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 22316 - 22350
Alignment:
Q  19 tcatctgagtcagtggaggatgatgatgagggtga 53  Q
    ||||||||||||||||||||||||||||| |||||    
T  22316 tcatctgagtcagtggaggatgatgatgaaggtga 22350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 330
Target Start/End: Original strand, 130178 - 130270
Alignment:
Q  238 tcttccatttcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgagctgttcatctctctgcttc 330  Q
    ||||| ||||||||||||| |||||||||  |||| |||||||||  | | ||  |||||||||| || ||||| | ||||||||||| ||||    
T  130178 tcttcaatttcagcagccagagaagcaatttcagcagctttctcaacatccagtacataccctgcagctttgagtttttcatctctctacttc 130270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0547 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0547
Description:

Target: scaffold0547; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 3115 - 3155
Alignment:
Q  21 atctgagtcagtggaggatgatgatgagggtgaggatggaa 61  Q
    |||||||||| |||||||||||||||||||||| |||||||    
T  3115 atctgagtcaatggaggatgatgatgagggtgaagatggaa 3155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0099 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0099
Description:

Target: scaffold0099; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 182
Target Start/End: Complemental strand, 14738 - 14593
Alignment:
Q  36 ggatgatgatgagggtgaggatggaaagtc-tggaatctgaacattgat-tttagcttttgaaggaatacctgaaga-atgagcttctggacgagcagct 132  Q
    |||||||||||||||||| ||||||| |||  |||||||||  |||||| |||||||| | ||| | ||||||||||  |||||||||||| |||| |||    
T  14738 ggatgatgatgagggtgaagatggaaggtcaaggaatctgagtattgatatttagcttgtaaagaagtacctgaagagttgagcttctggatgagctgct 14639  T
Q  133 tctgatgctggag-cttttgatgc-tggttctgaagaagtagctcctgaagc 182  Q
    |      |||||| |||| ||||| ||||||||| |||||||||||||||||    
T  14638 t------ctggagtctttagatgcttggttctgatgaagtagctcctgaagc 14593  T

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Target: scaffold1002 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold1002
Description:

Target: scaffold1002; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 67 - 185
Target Start/End: Complemental strand, 2169 - 2057
Alignment:
Q  67 ggaatctgaacattgattttagcttttgaaggaatacctgaagaatgagcttctggacgagcagcttctgatgctggagcttttgatgctggttctgaag 166  Q
    |||||||||  |||||||| |||||| || | | |||||||||| | | |||||||| |||| |||||||      ||||||| || |||||||| || |    
T  2169 ggaatctgagtattgatttcagctttagatgaagtacctgaagagttaccttctggatgagctgcttctg------gagctttagaagctggttcagatg 2076  T
Q  167 aagtagctcctgaagcatg 185  Q
    |||||||||||||||||||    
T  2075 aagtagctcctgaagcatg 2057  T

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Target: scaffold1002; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 311
Target Start/End: Complemental strand, 1995 - 1931
Alignment:
Q  247 tcagcagccaaagaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgag 311  Q
    |||||||| |||| |||||   |||| ||||| ||||||||||| ||||||||||| ||||||||    
T  1995 tcagcagctaaagcagcaagctcagcagctttttcaggagcaagttcataccctgcagccttgag 1931  T

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Target: scaffold0251 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 144 - 203
Target Start/End: Original strand, 24920 - 24979
Alignment:
Q  144 agcttttgatgctggttctgaagaagtagctcctgaagcatgttttcctttcagagcttg 203  Q
    |||||| || ||||||||||||||||||||| |||||||||| ||  |||||| ||||||    
T  24920 agctttagaagctggttctgaagaagtagcttctgaagcatgcttgtctttcaaagcttg 24979  T

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Target: scaffold0085 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 139
Target Start/End: Original strand, 56156 - 56259
Alignment:
Q  36 ggatgatgatgagggtgaggatggaaagtctggaatctgaacattgattttagcttttgaaggaatacctgaagaatgagcttctggacgagcagcttct 135  Q
    |||||| ||||||||||| || |||| ||| |||||||||  |||||| | || ||||  || | |||||||||| |||||||||||| |||| | ||||    
T  56156 ggatgaagatgagggtgaagaaggaaggtcaggaatctgagtattgatgtcagtttttagagaagtacctgaagagtgagcttctggatgagctggttct 56255  T
Q  136 gatg 139  Q
    ||||    
T  56256 gatg 56259  T

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Target: scaffold1638 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1638
Description:

Target: scaffold1638; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 311
Target Start/End: Original strand, 273 - 520
Alignment:
Q  58 ggaaagtctggaatctgaacattgattttagcttttgaaggaatacctgaagaatgagcttctggacgagcagcttctgatgctggagcttttgatgctg 157  Q
    |||| ||| |||||||||  |||||| |||||||| || | | |||||||||| ||||||||||||  ||| |||||||      ||||||| || || |    
T  273 ggaaggtcaggaatctgattattgatcttagctttggatgaagtacctgaagagtgagcttctggattagctgcttctg------gagctttagaagcag 366  T
Q  158 gttctgaagaagtagctcctgaagcatgttttcctttcagagcttgtcttaacaggtttgctccttcgttgatagtttcctcttccatttcagcagccaa 257  Q
    ||||| | |||||||||||||||||||| |||  ||||| | |||||   | ||    ||||||||  | || ||| || | ||| |  |||||||| ||    
T  367 gttctaatgaagtagctcctgaagcatgcttttttttcaaatcttgtgaaagcaatgctgctccttgctggacagtctcttgttctaactcagcagctaa 466  T
Q  258 agaagcaataacagctgctttctcaggagcaagctcataccctgctgccttgag 311  Q
    || ||| ||  |||| || || ||||||||||| ||||||||||||||||||||    
T  467 agcagccatctcagcagccttttcaggagcaagttcataccctgctgccttgag 520  T

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