View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12737_low_2 (Length: 653)

Name: NF12737_low_2
Description: NF12737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12737_low_2
NF12737_low_2
[»] chr1 (10 HSPs)
chr1 (18-636)||(24247065-24247683)
chr1 (254-350)||(23896904-23897000)
chr1 (417-489)||(24805942-24806014)
chr1 (252-330)||(24805819-24805897)
chr1 (189-323)||(45693578-45693712)
chr1 (89-167)||(24243489-24243567)
chr1 (252-338)||(24512250-24512336)
chr1 (260-350)||(25611760-25611850)
chr1 (254-330)||(24234146-24234222)
chr1 (252-332)||(24635568-24635648)
[»] scaffold0015 (2 HSPs)
scaffold0015 (247-336)||(41134-41223)
scaffold0015 (109-164)||(40989-41044)


Alignment Details
Target: chr1 (Bit Score: 575; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 18 - 636
Target Start/End: Original strand, 24247065 - 24247683
Alignment:
Q  18 ggagaccgttgcaagaaccaacgagaatgcggctatagaacgtagtatttagttgataaagggaagagtggtcaaaggagaacgtggcatcagaggtgaa 117  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  24247065 ggagaccgtcacaagaaccaacgagaatgcggctatagaacgtagtatttagttgataaaggaaagagtgatcaaaggagaacgtggcatcagaggtgaa 24247164  T
Q  118 actagagttgagttgaaaagagtccaatgggtaagacattacagttaactttggtgggaagttcaatgagcttgtgacgacatggtggcgtttggttgac 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  24247165 actagagttgagttgaaaagagtccaatgggtaagacattacagttaactttggtgggtagttcaatgagcttgtgacgacatggtggcgtttggttgac 24247264  T
Q  218 actcgaaggtgtttatttgcaaaacttctatcaattgagatgagagaattccacgacttgcagacgcagcggaatcgtaagagacacttgacagggagtc 317  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  24247265 actctaaggtgtttatttgcaaaacttctatcaattgagatgagagaattccacaacttgcagacgcagcggaatcgtaagagacacttgacagggagtc 24247364  T
Q  318 tgcacaggatttcagccacgacatccaacggaagttgagccaccagctgctgcctcttggtgtttgaaatcagataattccacaacttgcggaggaactt 417  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  24247365 tgcacaggatttcagccacgacatccaacggaagttgagccaccggctgcttcctcttggtgtttgaaatcagataattccacaacttgcggaggaactt 24247464  T
Q  418 cttggctgcaagtgttagggtttcggtggaggtggttggtcgcagctgcctcgtggtggcggtagtttcttcttccatcactgaatcagaagaagtggcg 517  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24247465 cttggctgcaagtgttagggttccggtggaggtggttggtcgcagctgcctcgtggtggcggtagtttcttcttccatcactgaatcagaagaagtggcg 24247564  T
Q  518 tcgttttggaatgaaaatgagtgttgggtaagggttaggaaaaaattaggaaatgatatcttggcaagtaaggttggtgactagtgaggataagaaacat 617  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  24247565 tcgttttggaatgaaaatgagtgttgggtaagggttaggaaaaaattaggaaatgatatcttggcaagtaaggttggtgactggtgaggataagaaacat 24247664  T
Q  618 ggttaaataatgaagtacc 636  Q
    |||||||||||||||||||    
T  24247665 ggttaaataatgaagtacc 24247683  T

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Target: chr1; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 254 - 350
Target Start/End: Original strand, 23896904 - 23897000
Alignment:
Q  254 gagatgagagaattccacgacttgcagacgcagcggaatcgtaagagacacttgacagggagtctgcacaggatttcagccacgacatccaacggaa 350  Q
    ||||| ||||||||||| ||||||||||||||||||||| ||| |||  ||||||||||||||||||||||||||||| |||||| ||| |||||||    
T  23896904 gagattagagaattccatgacttgcagacgcagcggaattgtaggaggaacttgacagggagtctgcacaggatttcaaccacgagatcaaacggaa 23897000  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 417 - 489
Target Start/End: Original strand, 24805942 - 24806014
Alignment:
Q  417 tcttggctgcaagtgttagggtttcggtggaggtggttggtcgcagctgcctcgtggtggcggtagtttcttc 489  Q
    ||||| ||| ||||||||||||| |||||||||||||||||| | ||||||| ||||||||||| ||||||||    
T  24805942 tcttgactggaagtgttagggttgcggtggaggtggttggtctcggctgccttgtggtggcggtggtttcttc 24806014  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 252 - 330
Target Start/End: Original strand, 24805819 - 24805897
Alignment:
Q  252 ttgagatgagagaattccacgacttgcagacgcagcggaatcgtaagagacacttgacagggagtctgcacaggatttc 330  Q
    ||||||||||||||||||| || ||||||||  |||||||||| | |||| | ||||| ||||||||||| ||||||||    
T  24805819 ttgagatgagagaattccaggatttgcagacagagcggaatcggaggagagatttgacggggagtctgcagaggatttc 24805897  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 323
Target Start/End: Original strand, 45693578 - 45693712
Alignment:
Q  189 ttgtgacgacatggtggcgtttggttgacactcgaaggtgtttatttgcaaaacttctatcaattgagatgagagaattccacgacttgcagacgcagcg 288  Q
    |||||| || |||| || ||||||||||||  |||||||| || || |||||  |   |||||||||||| |||||||||||||||||||| | ||||||    
T  45693578 ttgtgatgagatggcggtgtttggttgacatgcgaaggtgattcttagcaaatttgggatcaattgagattagagaattccacgacttgcatatgcagcg 45693677  T
Q  289 gaatcgtaagagacacttgacagggagtctgcaca 323  Q
    || | |||  ||| ||||||| |||||||| ||||    
T  45693678 gagttgtagaagaaacttgaccgggagtctacaca 45693712  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 89 - 167
Target Start/End: Original strand, 24243489 - 24243567
Alignment:
Q  89 tcaaaggagaacgtggcatcagaggtgaaactagagttgagttgaaaagagtccaatgggtaagacattacagttaact 167  Q
    |||||||||||| |  ||||  |||||||||||||  |||||| || |||||||||||| |||||| ||||| ||||||    
T  24243489 tcaaaggagaacataccatcgtaggtgaaactagatatgagtttaagagagtccaatggataagacgttacacttaact 24243567  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 252 - 338
Target Start/End: Complemental strand, 24512336 - 24512250
Alignment:
Q  252 ttgagatgagagaattccacgacttgcagacgcagcggaatcgtaagagacacttgacagggagtctgcacaggatttcagccacga 338  Q
    ||||||| ||||||||||| |||||||||||||| | |||| | | |||  ||||| |||||||||| || || ||||||| |||||    
T  24512336 ttgagatcagagaattccatgacttgcagacgcatccgaattgcacgaggaacttggcagggagtctacatagaatttcagtcacga 24512250  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 260 - 350
Target Start/End: Original strand, 25611760 - 25611850
Alignment:
Q  260 agagaattccacgacttgcagacgcagcggaatcgtaagagacacttgacagggagtctgcacaggatttcagccacgacatccaacggaa 350  Q
    ||||||||||| |||||||||||||| | |||| | | |||  ||||||| ||||| || || ||||||||| | |||||||| |||||||    
T  25611760 agagaattccatgacttgcagacgcaacagaattgaaggaggaacttgaccgggagcctacaaaggatttcaacgacgacatcaaacggaa 25611850  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 254 - 330
Target Start/End: Original strand, 24234146 - 24234222
Alignment:
Q  254 gagatgagagaattccacgacttgcagacgcagcggaatcgtaagagacacttgacagggagtctgcacaggatttc 330  Q
    ||||| || |||||||| ||||| ||||| ||||||||| ||| |||  | |||||||||||||| |||| ||||||    
T  24234146 gagataagcgaattccatgacttacagacacagcggaattgtaggaggaatttgacagggagtctacacaagatttc 24234222  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 252 - 332
Target Start/End: Original strand, 24635568 - 24635648
Alignment:
Q  252 ttgagatgagagaattccacgacttgcagacgcagcggaatcgtaagagacacttgacagggagtctgcacaggatttcag 332  Q
    ||||||| ||||||||||| |||||||||||||| | |||| | | |||  ||||| |||||||||| || || |||||||    
T  24635568 ttgagatcagagaattccatgacttgcagacgcatcagaattgcatgaggaacttggcagggagtctacatagaatttcag 24635648  T

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Target: scaffold0015 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 247 - 336
Target Start/End: Original strand, 41134 - 41223
Alignment:
Q  247 atcaattgagatgagagaattccacgacttgcagacgcagcggaatcgtaagagacacttgacagggagtctgcacaggatttcagccac 336  Q
    |||| ||||||| ||||||||||| |||||||||||||| |||||| ||| |||  | || ||||||||||  || ||||||||||||||    
T  41134 atcatttgagattagagaattccatgacttgcagacgcaacggaattgtaggaggaatttcacagggagtcgacataggatttcagccac 41223  T

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Target: scaffold0015; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 164
Target Start/End: Original strand, 40989 - 41044
Alignment:
Q  109 agaggtgaaactagagttgagttgaaaagagtccaatgggtaagacattacagtta 164  Q
    |||||| ||| |||||| |||||||| |||||| ||||| ||||||||||||||||    
T  40989 agaggtaaaaatagagtcgagttgaagagagtcgaatggataagacattacagtta 41044  T

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